Accumulation of Spock and Worf, two novel non-LTR retrotransposons, on the neo-Y chromosome of Drosophila miranda

Molecular Biology and Evolution

Volumn 20, Issue 2, 2003, Pages 173-181

  Bachtrog, Doris ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

Drosophila; Heterochromatin; Transposable elements; Y chromosome degeneration

Indexed keywords

ANOPHELES; ARTICLE; DNA DETERMINATION; DROSOPHILA; EUKARYOTE; GENE FREQUENCY; GENE LIBRARY; GENE LOCATION; GENE SEQUENCE; GENETIC RECOMBINATION; GENOME; IN SITU HYBRIDIZATION; MOLECULAR CLONING; MOLECULAR SIZE; NEO Y CHROMOSOME; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; POLYTENE CHROMOSOME; RETROPOSON; SEQUENCE HOMOLOGY; SEX CHROMOSOME; SOUTHERN BLOTTING; SPOCK GENE; TRANSPOSON; WORF GENE; Y CHROMOSOME;

ANIMALS; BASE SEQUENCE; BLOTTING, SOUTHERN; CHROMOSOME MAPPING; CHROMOSOMES; CLONING, MOLECULAR; DNA TRANSPOSABLE ELEMENTS; DROSOPHILA; GENE LIBRARY; IN SITU HYBRIDIZATION; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; POLYMERASE CHAIN REACTION; SEQUENCE HOMOLOGY, NUCLEIC ACID; TERMINAL REPEAT SEQUENCES;

DROSOPHILA MELANOGASTER; DROSOPHILA MIRANDA; EUKARYOTA; MELANOGASTER;

EID: 0037329518     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg035     Document Type: Article

References (57)

1. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Bachtrog, D., and B. Charlesworth. 2000. Reduced levels of microsatellite variability on the neo-Y chromosome of Drosophila miranda. Curr. Biol. 10:1025-1031.
3. -. 2002. Reduced adaptation of a non-recombining neo-Y chromosome. Nature 416:323-326.
4. Baker, W. K. 1958. Crossing over in heterochromatin. Am. Nat. 92:9-60.
5. Bartolomé, C., X. Maside, and B. Charlesworth. 2002. On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster. Mol. Biol. Evol. 19:926-937.
6. Berg, D. E., and M. M. Howe. 1989. Mobile DNA. American Society of Microbiology, Washington, DC.
7. Biemont, C., A. Tsitrone, C. Vieira, and C. Hoogland. 1997. Transposable element distribution in Drosophila. Genetics 147:1997-1999.
8. Bone, J. R., and M. I. Kuroda. 1996. Dosage compensation regulatory proteins and the evolution of sex chromosomes in Drosophila. Genetics 144:705-713.
9. Carvalho, A. B., B. A. Dobo, M. D. Vibranovski, and A. G. Clark. 2001. Identification of five new genes on the Y chromosome of Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 98:13225-13230.
10. Carvalho, A. B., B. P. Lazzaro, and A. G. Clark. 2000. Y chromosomal fertility factors kl-2 and kl-3 of Drosophila melanogaster encode dynein heavy chain polypeptides. Proc. Natl. Acad. Sci. USA 97:13239-13244.
11. Charlesworth, B. 1994. The effect of background selection against deleterious mutations on weakly selected, linked variants. Genet. Res. 63:213-227.
12. Charlesworth, B., and D. Charlesworth. 2000. The degeneration of Y chromosomes. Philos. Trans. R. Soc. Lond. B. Biol. Sci. 355:1563-1572.
13. Charlesworth, B., P. Jarne, and S. Assimacopoulos. 1994. The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. III. Element abundances in heterochromatin. Genet. Res. 64:183-197.
14. Charlesworth, B., and C. H. Langley. 1989. The population genetics of Drosophila transposable elements. Annu. Rev. Genet. 23:251-287.
15. Charlesworth, B., A. Lapid, and D. Canada. 1992. The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. I. Element frequencies and distribution. Genet. Res. 60:103-114.
16. Charlesworth, B., P. Sniegowski, and W. Stephan. 1994. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371:215-220.
17. Cold Spring Harbor Laboratory. 2000. The complete sequence of a heterochromatic island from a higher eukaryote. Washington University Genome Sequencing Center, and PE Biosystems Arabidopsis Sequencing Consortium. Cell 100:377-386.
18. Das, M., D. Mutsuddi, A. K. Duttagupta, and A. S. Mukherjee. 1982. Segmental heterogeneity in replication and transcription of the X2 chromosome of Drosophila miranda and conservativeness in the evolution of dosage compensation. Chromosoma 87:373-388.
19. Dorer, D. R., and S. Henikoff. 1994. Expansions of transgene repeats cause heterochromatin formation and gene silencing in Drosophila. Cell 77:993-1002.
20. Duret, L., G. Marais, and C. Biemont. 2000. Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans. Genetics 156:1661-1669.
21. Finnegan, D. J. 1989. Eukaryotic transposable elements and genome evolution. Trends Genet. 5:103-107.
22. Gall, G. J., E. H. Cohen, and M. L. Polan. 1971. Repetitive DNA sequences in Drosophila. Chromosoma 33:319-344.
23. Gethmann, R. C. 1988. Crossing over in males of higher Diptera (Brachycera). J. Hered. 79:344-350.
24. Gordo, I., and B. Charlesworth. 2001. The speed of Muller's ratchet with background selection, and the degeneration of Y chromosomes. Genet. Res. 78:149-161.
25. Hill, W. G., and A. Robertson. 1966. The effect of linkage on limits to artificial selection. Genet. Res. 8:269-294.
26. Hilliker, A. J., R. Appels, and A. Schalet. 1980. The genetic analysis of D. melanogaster heterochromatin. Cell 21:607-619.
27. Junakovic, N., A. Terrinoni, C. Di Franco, C. Vieira, and C. Loevenbruck. 1998. Accumulation of transposable elements in the heterochromatin and on the Y chromosome of Drosophila simulans and Drosophila melanogaster. J. Mol. Evol. 46:661-668.
28. Kennison, J. A. 1981. The genetic and cytological organization of the Y chromosome of Drosophila melanogaster. Genetics 98:529-548.
29. Kimura, M. 1983. The neutral theory of molecular evolution. Cambridge University Press, Cambridge.
30. Kurek, R., A. M. Reugels, U. Lammermann, and H. Bünemann. 2000. Molecular aspects of intron evolution in dynein encoding mega-genes on the heterochromatic Y chromosome of Drosophila sp. Genetica 109:113-123.
31. Langley, C. H., E. Montgomery, R. Hudson, N. Kaplan, and B. Charlesworth. 1988. On the role of unequal exchange in the containment of transposable element copy number. Genet. Res. 52:223-235.
32. Luk, S. K., M. Kilpatrick, K. Kerr, and P. M. Macdonald. 1994. Components acting in localization of bicoid mRNA are conserved among Drosophila species. Genetics 137:521-530.
33. Macknight, R. H. 1939. The sex-determining mechanism of Drosophila miranda. Genetics 24:180-201.
34. Malik, H. S., W. D Burke, and T. H. Eickbush. 1999. The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 16:793-805.
35. Marin, I., A. Franke, G. J. Bashaw, and B. S. Baker. 1996. The dosage compensation system of Drosophila is coopted by newly evolved X chromosomes. Nature 383:160-163.
36. Maside, X., C. Bartolome, S. Assimacopoulos, and B. Charlesworth. 2001. Rates of movement and distribution of transposable elements in Drosophila melanogaster: in situ hybridization vs. Southern blotting data. Genet. Res. 78:121-136.
37. McDonald, J. F. 1993. Transposable elements and evolution. Kluver, Dodrect, The Netherlands.
38. Montgomery, E. A., S. M. Huang, C. H. Langley, and B. H. Judd. 1991. Chromosome rearrangement by ectopic recombination in Drosophila melanogaster: genome structure and evolution. Genetics 129:1085-1098.
39. Muller, H. 1964. The relation of recombination to mutational advance. Mutat. Res. 1:2-9.
40. Pimpinelli, S., M. Berloco, L. Fanti, P. Dimitri, S. Bonaccorsi, E. Marchetti, R. Caizzi, C. Caggese, and M. Gatti. 1995. Transposable elements are stable structural components of Drosophila melanogaster heterochromatin. Proc. Natl. Acad. Sci. USA 92:3804-3808.
41. Rice, W. R. 1987. Genetic hitchhiking and the evolution of reduced genetic activity of the Y sex chromosome. Genetics 116:161-167.
42. -. 1996. Evolution of the Y sex chromosome in animals. BioScience 46:331-343.
43. Rizzon, C., G. Marais, M. Gouy, and C. Biemont. 2002. Recombination rate and the distribution of transposable elements in the Drosophila melanogaster genome. Genome Res. 12:400-407.
44. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
45. Steinemann, M. 1982. Multiple sex chromosomes in Drosophila miranda: a system to study the degeneration of a chromosome. Chromosoma 86:59-76.
46. Steinemann, M., and S. Steinemann. 1991. Preferential Y chromosomal location of TRIM, a novel transposable element of Drosophila miranda, obscura group. Chromosoma 101:169-79.
47. -. 1992. Degenerating Y chromosome of Drosophila miranda: a trap for retrotransposons. Proc. Natl. Acad. Sci. USA 89:7591-7595.
48. -. 1997. The enigma of Y chromosome degeneration: TRAM, a novel retrotransposon is preferentially located on the Neo-Y chromosome of Drosophila miranda. Genetics 145:261-266.
49. -. 1998. Enigma of Y chromosome degeneration: neo-Y and neo-X chromosomes of Drosophila miranda a model for sex chromosome evolution. Genetica 102-103:409-420.
50. Steinemann, M., S. Steinemann, and F. Lottspeich. 1993. How Y chromosomes become genetically inert. Proc. Natl. Acad. Sci. USA 90:5737-5741.
51. Steinemann, M., S. Steinemann, and B. M. Turner. 1996. Evolution of dosage compensation. Chromosome Res. 4:1-6.
52. Steinemann, S., and M. Steinemann. 1999. The Amylase gene cluster on the evolving sex chromosomes of Drosophila miranda. Genetics 151:151-161.
53. -. 2001. Biased distribution of repetitive elements: a landmark for neo-Y chromosome evolution in Drosophila miranda. Cytogenet Cell Genet 93:228-233.
54. Tilford, C. A., T. Kuroda-Kawaguchi, H. Skaletsky, et al. (12 co-authors). 2001. A physical map of the human Y chromosome. Nature 409:943-945.
55. Virgin, J. B., and J. P. Bailey. 1998. The M26 hotspot of Schizosaccharomyces pombe stimulates meiotic ectopic recombination and chromosomal rearrangements. Genetics 149:1191-1204.
56. Yi, S., and B. Charlesworth. 2000a. A selective sweep associated with a recent gene transposition in Drosophila miranda. Genetics, 156:175-1763.
57. -. 2000b. Contrasting patterns of molecular evolution of the genes on the new and old sex chromosomes of Drosophila miranda. Mol. Biol. Evol. 17:703-717.