-
1
-
-
84874172901
-
The commensal microbiota drives immune homeostasis
-
Arrietta, M.-C., and Finlay, B. B. (2012). The commensal microbiota drives immune homeostasis. Front. Immunol. 3:33. doi: 10.3389/fimmu.2012.00033
-
(2012)
Front. Immunol
, vol.3
, pp. 33
-
-
Arrietta, M.-C.1
Finlay, B.B.2
-
2
-
-
0000085981
-
Frequency-dependent selection
-
Ayala, F. J., and Campbell, C. A. (1974). Frequency-dependent selection. Annu. Rev. Ecol. Syst. 5, 115-138. doi: 10.1146/annurev.es.05.110174.000555
-
(1974)
Annu. Rev. Ecol. Syst
, vol.5
, pp. 115-138
-
-
Ayala, F.J.1
Campbell, C.A.2
-
3
-
-
33846060282
-
Key role of selective viral-induced mortality in determining marine bacterial community composition
-
Bouvier, T., and del Giorgio, P. A. (2007). Key role of selective viral-induced mortality in determining marine bacterial community composition. Environ. Microbiol. 9, 287-297. doi: 10.1111/j.1462-2920.2006.01137.x
-
(2007)
Environ. Microbiol
, vol.9
, pp. 287-297
-
-
Bouvier, T.1
del Giorgio, P.A.2
-
4
-
-
84867845255
-
The interplay between the intestinal microbiota and the brain
-
Collins, S. M., Surette, M., and Bercik, P. (2012). The interplay between the intestinal microbiota and the brain. Nat. Rev. Microbiol. 10, 735-742. doi: 10.1038/nrmicro2876
-
(2012)
Nat. Rev. Microbiol
, vol.10
, pp. 735-742
-
-
Collins, S.M.1
Surette, M.2
Bercik, P.3
-
5
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
Dinsdale, E. A., Edwards, R. A., Hall, D., Angly, F., Breitbart, M., Brulc, J. M., et al. (2008). Functional metagenomic profiling of nine biomes. Nature 452, 629-632. doi: 10.1038/nature06810
-
(2008)
Nature
, vol.452
, pp. 629-632
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
Brulc, J.M.6
-
6
-
-
84878508811
-
The emergence of environmental homeostasis in complex ecosystems
-
Dyke, J. G., and Weaver, I. S. (2013). The emergence of environmental homeostasis in complex ecosystems. PLoS Comput. Biol. 9:e1003050. doi: 10.1371/journal.pcbi.1003050
-
(2013)
PLoS Comput. Biol
, vol.9
-
-
Dyke, J.G.1
Weaver, I.S.2
-
7
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill, S. R., Pop, M., Deboy, R. T., Eckburg, P. B., Turnbaugh, P. J., Samuel, B. S., et al. (2006). Metagenomic analysis of the human distal gut microbiome. Science 312, 1355-1359. doi: 10.1126/science.1124234
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
Deboy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
Samuel, B.S.6
-
8
-
-
0347447341
-
Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: effects of virus infection, containment, and nutrient enrichment
-
Hewson, I., Vargo, G. A., and Fuhrman, J. A. (2003). Bacterial diversity in shallow oligotrophic marine benthos and overlying waters: effects of virus infection, containment, and nutrient enrichment. Microb. Ecol. 46, 322-336. doi: 10.1007/s00248-002-1067-3
-
(2003)
Microb. Ecol
, vol.46
, pp. 322-336
-
-
Hewson, I.1
Vargo, G.A.2
Fuhrman, J.A.3
-
9
-
-
84894118144
-
Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders
-
Hsiao, E. Y., McBride, S. W., Hsien, S., Sharon, G., Hyde, E. R., McCue, T., et al. (2013). Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders. Cell 155, 1451-1463. doi: 10.1016/j.cell.2013.11.024
-
(2013)
Cell
, vol.155
, pp. 1451-1463
-
-
Hsiao, E.Y.1
McBride, S.W.2
Hsien, S.3
Sharon, G.4
Hyde, E.R.5
McCue, T.6
-
10
-
-
0028179028
-
Organisms as ecosystem engineers
-
Jones, C. G., Lawton, J. H., and Shachak, M. (1994). Organisms as ecosystem engineers. Oikos 69, 373-386. doi: 10.2307/3545850
-
(1994)
Oikos
, vol.69
, pp. 373-386
-
-
Jones, C.G.1
Lawton, J.H.2
Shachak, M.3
-
11
-
-
84868158515
-
Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice
-
Lawley, T. D., Clare, S., Walker, A. W., Stares, M. D., Connor, T. R., Raisen, C., et al. (2012). Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLoS Pathog. 8:e1002995. doi: 10.1371/journal.ppat.1002995
-
(2012)
PLoS Pathog
, vol.8
-
-
Lawley, T.D.1
Clare, S.2
Walker, A.W.3
Stares, M.D.4
Connor, T.R.5
Raisen, C.6
-
12
-
-
0034646538
-
Infectious history
-
Lederberg, J. (2000). Infectious history. Science 288, 287-293. doi: 10.1126/science.288.5464.287
-
(2000)
Science
, vol.288
, pp. 287-293
-
-
Lederberg, J.1
-
13
-
-
80052750212
-
Molecular characterization of fecal microbiota in patients with viral diarrhea
-
Ma, C., Wu, X., Nawaz, M., Li, J., Yu, P., Moore, J. E., et al. (2011). Molecular characterization of fecal microbiota in patients with viral diarrhea. Curr. Microbiol. 63, 259-266. doi: 10.1007/s00284-011-9972-7
-
(2011)
Curr. Microbiol
, vol.63
, pp. 259-266
-
-
Ma, C.1
Wu, X.2
Nawaz, M.3
Li, J.4
Yu, P.5
Moore, J.E.6
-
14
-
-
33846207822
-
Adaptive immunity: care for the community
-
McFall-Ngai, M. (2007). Adaptive immunity: care for the community. Nature 445, 153. doi: 10.1038/445153a
-
(2007)
Nature
, vol.445
, pp. 153
-
-
McFall-Ngai, M.1
-
15
-
-
84880652104
-
Rapid evolution of the human gut virome
-
Minot, S., Bryson, A., Chehoud, C., Wu, G. D., Lewis, J. D., and Bushman, F. D. (2013). Rapid evolution of the human gut virome. Proc. Natl. Acad. Sci. U.S.A. 110, 12450-12455. doi: 10.1073/pnas.1300833110
-
(2013)
Proc. Natl. Acad. Sci. U.S.A
, vol.110
, pp. 12450-12455
-
-
Minot, S.1
Bryson, A.2
Chehoud, C.3
Wu, G.D.4
Lewis, J.D.5
Bushman, F.D.6
-
16
-
-
0031956456
-
Organization of honeybee colonies: characteristics and consequences of a superorganism concept
-
Moritz, R. F. A., and Fuchs, S. (1998). Organization of honeybee colonies: characteristics and consequences of a superorganism concept. Apidologie 29, 7-21. doi: 10.1051/apido:19980101
-
(1998)
Apidologie
, vol.29
, pp. 7-21
-
-
Moritz, R.F.A.1
Fuchs, S.2
-
17
-
-
84868155170
-
Disruption of the human gut microbiota following Norovirus infection
-
Nelson, A. M., Walk, S. T., Taube, S., Taniuchi, M., Houpt, E. R., Wobus, C. E., et al. (2012). Disruption of the human gut microbiota following Norovirus infection. PLoS ONE 7:e48224. doi: 10.1371/journal.pone.0048224
-
(2012)
PLoS ONE
, vol.7
-
-
Nelson, A.M.1
Walk, S.T.2
Taube, S.3
Taniuchi, M.4
Houpt, E.R.5
Wobus, C.E.6
-
18
-
-
84924437897
-
-
37, Princeton, NJ: Princeton University Press
-
Odling-Smee, F. J., Laland, K. N., and Feldman, M. W. (2003). Niche Construction: The Neglected Process in Evolution, Vol. 37, Princeton, NJ: Princeton University Press.
-
(2003)
Niche Construction: The Neglected Process in Evolution, Vol
-
-
Odling-Smee, F.J.1
Laland, K.N.2
Feldman, M.W.3
-
19
-
-
79751505371
-
Fecal matters
-
Palmer, R. (2011). Fecal matters. Nat. Med. 17, 150-152. doi: 10.1038/nm0211-150
-
(2011)
Nat. Med
, vol.17
, pp. 150-152
-
-
Palmer, R.1
-
20
-
-
0033056680
-
Sequence of shiga toxin 2 phage 933W from Escherichia coli O157:H7: shiga toxin as a phage late-gene product
-
Plunkett, G. 3rd; Rose, D. J., Durfee, T. J., and Blattner, F. R. (1999). Sequence of shiga toxin 2 phage 933W from Escherichia coli O157:H7: shiga toxin as a phage late-gene product. J. Bacteriol. 181, 1767-1778.
-
(1999)
J. Bacteriol
, vol.181
, pp. 1767-1778
-
-
Plunkett, G.1
Rose, D.J.2
Durfee, T.J.3
Blattner, F.R.4
-
21
-
-
0027194507
-
Colonic dysfunction in acute diarrhoea: the role of luminal short chain fatty acids
-
Ramakrishna, B. S., and Mathan, V. I. (1993). Colonic dysfunction in acute diarrhoea: the role of luminal short chain fatty acids. Gut 34, 1215-1218.
-
(1993)
Gut
, vol.34
, pp. 1215-1218
-
-
Ramakrishna, B.S.1
Mathan, V.I.2
-
22
-
-
77954627922
-
Viruses in the faecal microbiota of monozygotic twins and their mothers
-
Reyes, A., Haynes, M., Hanson, N., Angly, F. E., Heath, A. C., Rohwer, F., et al. (2010). Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature 466, 334-338. doi: 10.1038/nature09199
-
(2010)
Nature
, vol.466
, pp. 334-338
-
-
Reyes, A.1
Haynes, M.2
Hanson, N.3
Angly, F.E.4
Heath, A.C.5
Rohwer, F.6
-
23
-
-
84865169911
-
Going viral: next-generation sequencing applied to phage populations in the human gut
-
Reyes, A., Semenkovich, N. P., Whiteson, K., Rohwer, F., and Gordon, J. I. (2012). Going viral: next-generation sequencing applied to phage populations in the human gut. Nat. Rev. Microbiol. 10, 607-617. doi: 10.1038/nrmicro2853
-
(2012)
Nat. Rev. Microbiol
, vol.10
, pp. 607-617
-
-
Reyes, A.1
Semenkovich, N.P.2
Whiteson, K.3
Rohwer, F.4
Gordon, J.I.5
-
24
-
-
84883478660
-
Gut microbiota from twins discordant for obesity modulate metabolism in mice
-
Ridaura, V. K., Faith, J. J., Rey, F. E., Cheng, J., Duncan, A. E., Kau, A. L., et al. (2013). Gut microbiota from twins discordant for obesity modulate metabolism in mice. Science 341:1241214. doi: 10.1126/science.1241214
-
(2013)
Science
, vol.341
-
-
Ridaura, V.K.1
Faith, J.J.2
Rey, F.E.3
Cheng, J.4
Duncan, A.E.5
Kau, A.L.6
-
25
-
-
66149151286
-
Viruses manipulate the marine environment
-
Rohwer, F., and Thurber, R. V. (2009). Viruses manipulate the marine environment. Nature 459, 207-212. doi: 10.1038/nature08060
-
(2009)
Nature
, vol.459
, pp. 207-212
-
-
Rohwer, F.1
Thurber, R.V.2
-
26
-
-
84887504413
-
Selfishness, warfare, and economics; or integration, cooperation, and biology
-
Salvucci, E. (2012). Selfishness, warfare, and economics; or integration, cooperation, and biology. Front. Cell. Infect. Microbiol. 2:54. doi: 10.3389/fcimb.2012.00054
-
(2012)
Front. Cell. Infect. Microbiol
, vol.2
, pp. 54
-
-
Salvucci, E.1
-
27
-
-
77955647582
-
Gut microbiota in health and disease
-
Sekirov, I., Russell, S. L., Antunes, L. C., and Finlay, B. B. (2010). Gut microbiota in health and disease. Physiol. Rev. 90, 859-904. doi: 10.1152/physrev.00045.2009
-
(2010)
Physiol. Rev
, vol.90
, pp. 859-904
-
-
Sekirov, I.1
Russell, S.L.2
Antunes, L.C.3
Finlay, B.B.4
-
28
-
-
83055186603
-
Ecology drives a global network of gene exchange connecting the human microbiome
-
Smillie, C. S., Smith, M. B., Friedman, J., Cordero, O. X., David, L. A., and Alm, E. J. (2011). Ecology drives a global network of gene exchange connecting the human microbiome. Nature 480, 241-244. doi: 10.1038/nature10571
-
(2011)
Nature
, vol.480
, pp. 241-244
-
-
Smillie, C.S.1
Smith, M.B.2
Friedman, J.3
Cordero, O.X.4
David, L.A.5
Alm, E.J.6
-
29
-
-
84876414806
-
The gut microbiota-masters of host development and physiology
-
Sommer, F., and Bäckhed, F. (2013). The gut microbiota-masters of host development and physiology. Nat. Rev. Microbiol. 11, 227-238. doi: 10.1038/nrmicro2974
-
(2013)
Nat. Rev. Microbiol
, vol.11
, pp. 227-238
-
-
Sommer, F.1
Bäckhed, F.2
-
30
-
-
84862276328
-
Structure, function and diversity of the healthy human microbiome
-
The Human Microbiome Project Consortium. (2012). Structure, function and diversity of the healthy human microbiome. Nature 486, 207-214. doi: 10.1038/nature11234
-
(2012)
Nature
, vol.486
, pp. 207-214
-
-
-
31
-
-
0033826796
-
Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems
-
Thingstad, T. F. (2000). Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnol. Oceanogr. 45, 1320-1328. doi: 10.4319/lo.2000.45.6.1320
-
(2000)
Limnol. Oceanogr
, vol.45
, pp. 1320-1328
-
-
Thingstad, T.F.1
-
32
-
-
84866168894
-
Functional interactions between the gut microbiota and host metabolism
-
Tremaroli, V., and Bäckhed, F. (2012). Functional interactions between the gut microbiota and host metabolism. Nature 489, 242-249. doi: 10.1038/nature11552
-
(2012)
Nature
, vol.489
, pp. 242-249
-
-
Tremaroli, V.1
Bäckhed, F.2
-
33
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., et al. (2009). A core gut microbiome in obese and lean twins. Nature 457, 480-484. doi: 10.1038/nature07540
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
-
34
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh, P. J., Ley, R. E., Mahowald, M. A., Magrini, V., Mardis, E. R., and Gordon, J. I. (2006). An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444, 1027-1031. doi: 10.1038/nature05414
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
35
-
-
84873718952
-
Therapeutic modulation of intestinal dysbiosis
-
Walker, A. W., and Lawley, T. D. (2013). Therapeutic modulation of intestinal dysbiosis. Pharmacol. Res. 69, 75-86. doi: 10.1016/j.phrs.2012.09.008
-
(2013)
Pharmacol. Res
, vol.69
, pp. 75-86
-
-
Walker, A.W.1
Lawley, T.D.2
-
36
-
-
79952768866
-
Shifting the balance: antibiotic effects on host-microbiota mutualism
-
Willing, B. P., Russell, S. L., and Finlay, B. B. (2011). Shifting the balance: antibiotic effects on host-microbiota mutualism. Nat. Rev. Microbiol. 9, 233-243. doi: 10.1038/nrmicro2536
-
(2011)
Nat. Rev. Microbiol
, vol.9
, pp. 233-243
-
-
Willing, B.P.1
Russell, S.L.2
Finlay, B.B.3
|