-
1
-
-
79952117970
-
Agent-based models in translational systems biology
-
An G., Mi Q., Dutta-Moscato J., Vodovotz Y. Agent-based models in translational systems biology. Wiley Interdiscip. Rev. Syst. Biol. Med. 2009, 1:159-171. 10.1002/wsbm.45.
-
(2009)
Wiley Interdiscip. Rev. Syst. Biol. Med.
, vol.1
, pp. 159-171
-
-
An, G.1
Mi, Q.2
Dutta-Moscato, J.3
Vodovotz, Y.4
-
2
-
-
78649243405
-
Stimulus protocol determines the most computationally efficient preconditioner for the bidomain equations
-
Bernabeu M.O., Pathmanathan P., Pitt-Francis J., Kay D. Stimulus protocol determines the most computationally efficient preconditioner for the bidomain equations. IEEE Trans. Biomed. Eng. 2010, 57:2806-2815. 10.1109/TBME.2010.2078817.
-
(2010)
IEEE Trans. Biomed. Eng.
, vol.57
, pp. 2806-2815
-
-
Bernabeu, M.O.1
Pathmanathan, P.2
Pitt-Francis, J.3
Kay, D.4
-
3
-
-
0036086781
-
Acomputationally efficient electrophysiological model of human ventricular cells
-
Bernus O., Wilders R., Zemlin C.W., Verschelde H., Panfilov A.V. Acomputationally efficient electrophysiological model of human ventricular cells. Am. J. Physiol. - Heart Circ. Physiol. 2002, 282:H2296-H2308. 10.1152/ajpheart.00731.2001.
-
(2002)
Am. J. Physiol. - Heart Circ. Physiol.
, vol.282
, pp. H2296-H2308
-
-
Bernus, O.1
Wilders, R.2
Zemlin, C.W.3
Verschelde, H.4
Panfilov, A.V.5
-
4
-
-
4143118861
-
Computer model of action potential of mouse ventricular myocytes
-
Bondarenko V.E., Szigeti G.P., Bett G.C.L., Kim S.-J., Rasmusson R.L. Computer model of action potential of mouse ventricular myocytes. Am. J. Physiol. Heart Circ. Physiol. 2004, 287:H1378-H1403. 10.1152/ajpheart.00185.2003.
-
(2004)
Am. J. Physiol. Heart Circ. Physiol.
, vol.287
, pp. H1378-H1403
-
-
Bondarenko, V.E.1
Szigeti, G.P.2
Bett, G.C.L.3
Kim, S.-J.4
Rasmusson, R.L.5
-
6
-
-
84896917119
-
Connecting models to data in multiscale multicellular tissue simulations
-
Cooper J., Osborne J. Connecting models to data in multiscale multicellular tissue simulations. Proced. Comput. Sci. 2013, 18:712-721. 10.1016/j.procs.2013.05.235.
-
(2013)
Proced. Comput. Sci.
, vol.18
, pp. 712-721
-
-
Cooper, J.1
Osborne, J.2
-
7
-
-
80053591347
-
Considerations for the use of cellular electrophysiology models within cardiac tissue simulations
-
Cooper J., Corrias A., Gavaghan D., Noble D. Considerations for the use of cellular electrophysiology models within cardiac tissue simulations. Prog. Biophys. Mol. Biol. 2011, 107:74-80. 10.1016/j.pbiomolbio.2011.06.002.
-
(2011)
Prog. Biophys. Mol. Biol.
, vol.107
, pp. 74-80
-
-
Cooper, J.1
Corrias, A.2
Gavaghan, D.3
Noble, D.4
-
8
-
-
80053605881
-
High-throughput functional curation of cellular electrophysiology models
-
Cooper J., Mirams G.R., Niederer S.A. High-throughput functional curation of cellular electrophysiology models. Prog. Biophys. Mol. Biol. 2011, 107:11-20. 10.1016/j.pbiomolbio.2011.06.003.
-
(2011)
Prog. Biophys. Mol. Biol.
, vol.107
, pp. 11-20
-
-
Cooper, J.1
Mirams, G.R.2
Niederer, S.A.3
-
9
-
-
80054074775
-
The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions
-
de Bono B., Hoehndorf R., Wimalaratne S., Gkoutos G., Grenon P. The RICORDO approach to semantic interoperability for biomedical data and models: strategy, standards and solutions. BMC Res. Notes 2011, 4:313. 10.1186/1756-0500-4-313.
-
(2011)
BMC Res. Notes
, vol.4
, pp. 313
-
-
de Bono, B.1
Hoehndorf, R.2
Wimalaratne, S.3
Gkoutos, G.4
Grenon, P.5
-
11
-
-
38549173069
-
-
Addison-Wesley, Upper Saddle River, NJ
-
Duvall P.M., Matyas S., Glover A. Continuous Integration: Improving Software Quality and Reducing Risk 2007, Addison-Wesley, Upper Saddle River, NJ.
-
(2007)
Continuous Integration: Improving Software Quality and Reducing Risk
-
-
Duvall, P.M.1
Matyas, S.2
Glover, A.3
-
12
-
-
68449086002
-
The economy needs agent-based modelling
-
Farmer J.D., Foley D. The economy needs agent-based modelling. Nature 2009, 460:685-686. 10.1038/460685a.
-
(2009)
Nature
, vol.460
, pp. 685-686
-
-
Farmer, J.D.1
Foley, D.2
-
13
-
-
77954697196
-
Cardiac cell modelling: observations from the heart of the cardiac physiome project
-
Fink M., Niederer S.A., Cherry E.M., Fenton F.H., Koivumäki J.T., Seemann G., Thul R., Zhang H., Sachse F.B., Beard D., Crampin E.J., Smith N.P. Cardiac cell modelling: observations from the heart of the cardiac physiome project. Prog. Biophys. Mol. Biol. 2011, 104:2-21. 10.1016/j.pbiomolbio.2010.03.002.
-
(2011)
Prog. Biophys. Mol. Biol.
, vol.104
, pp. 2-21
-
-
Fink, M.1
Niederer, S.A.2
Cherry, E.M.3
Fenton, F.H.4
Koivumäki, J.T.5
Seemann, G.6
Thul, R.7
Zhang, H.8
Sachse, F.B.9
Beard, D.10
Crampin, E.J.11
Smith, N.P.12
-
14
-
-
84864205790
-
Three dream applications of verifiable computational results
-
Gavish M., Donoho D. Three dream applications of verifiable computational results. Comput. Sci. Eng. 2012, 14:26-31. 10.1109/MCSE.2012.65.
-
(2012)
Comput. Sci. Eng.
, vol.14
, pp. 26-31
-
-
Gavish, M.1
Donoho, D.2
-
15
-
-
84876310782
-
Bridging the genotype-phenotype gap: what does it take?
-
Gjuvsland A.B., Vik J.O., Beard D.A., Hunter P.J., Omholt S.W. Bridging the genotype-phenotype gap: what does it take?. J.Physiol. 2013, 591:2055-2066. 10.1113/jphysiol.2012.248864.
-
(2013)
J.Physiol.
, vol.591
, pp. 2055-2066
-
-
Gjuvsland, A.B.1
Vik, J.O.2
Beard, D.A.3
Hunter, P.J.4
Omholt, S.W.5
-
17
-
-
33748151495
-
Astandard protocol for describing individual-based and agent-based models
-
Grimm V., Berger U., Bastiansen F., Eliassen S., Ginot V., Giske J., Goss-Custard J., Grand T., Heinz S.K., Huse G., Huth A., Jepsen J.U., Jørgensen C., Mooij W.M., Müller B., Pe'er G., Piou C., Railsback S.F., Robbins A.M., Robbins M.M., Rossmanith E., Rüger N., Strand E., Souissi S., Stillman R.A., Vabø R., Visser U., DeAngelis D.L. Astandard protocol for describing individual-based and agent-based models. Ecol. Model 2006, 198:115-126. 10.1016/j.ecolmodel.2006.04.023.
-
(2006)
Ecol. Model
, vol.198
, pp. 115-126
-
-
Grimm, V.1
Berger, U.2
Bastiansen, F.3
Eliassen, S.4
Ginot, V.5
Giske, J.6
Goss-Custard, J.7
Grand, T.8
Heinz, S.K.9
Huse, G.10
Huth, A.11
Jepsen, J.U.12
Jørgensen, C.13
Mooij, W.M.14
Müller, B.15
Pe'er, G.16
Piou, C.17
Railsback, S.F.18
Robbins, A.M.19
Robbins, M.M.20
Rossmanith, E.21
Rüger, N.22
Strand, E.23
Souissi, S.24
Stillman, R.A.25
Vabø, R.26
Visser, U.27
DeAngelis, D.L.28
more..
-
18
-
-
77957301158
-
The ODD protocol: a review and first update
-
Grimm V., Berger U., DeAngelis D.L., Polhill J.G., Giske J., Railsback S.F. The ODD protocol: a review and first update. Ecol. Model 2010, 221:2760-2768. 10.1016/j.ecolmodel.2010.08.019.
-
(2010)
Ecol. Model
, vol.221
, pp. 2760-2768
-
-
Grimm, V.1
Berger, U.2
DeAngelis, D.L.3
Polhill, J.G.4
Giske, J.5
Railsback, S.F.6
-
20
-
-
84904718597
-
Considerations of graph-based concepts to manage of computational biology models and associated simulations
-
Henkel R., Le Novère N., Wolkenhauer O., Waltemath D. Considerations of graph-based concepts to manage of computational biology models and associated simulations. Gi-jahrestagung 2012, 1545-1551.
-
(2012)
Gi-jahrestagung
, pp. 1545-1551
-
-
Henkel, R.1
Le Novère, N.2
Wolkenhauer, O.3
Waltemath, D.4
-
22
-
-
84864249527
-
Virtual appliances, cloud computing, and reproducible research
-
Howe B. Virtual appliances, cloud computing, and reproducible research. Comput. Sci. Eng. 2012, 14:36-41. 10.1109/MCSE.2012.62.
-
(2012)
Comput. Sci. Eng.
, vol.14
, pp. 36-41
-
-
Howe, B.1
-
23
-
-
77953529580
-
Avision and strategy for the virtual physiological human in 2010 and beyond
-
Hunter P., Coveney P.V., de Bono B., Diaz V., Fenner J., Frangi A.F., Harris P., Hose R., Kohl P., Lawford P., McCormack K., Mendes M., Omholt S., Quarteroni A., Skår J., Tegner J., Randall Thomas S., Tollis I., Tsamardinos I., van Beek J.H.G.M., Viceconti M. Avision and strategy for the virtual physiological human in 2010 and beyond. Philos. Trans. R. Soc. Math. Phys. Eng. Sci. 2010, 368:2595-2614. 10.1098/rsta.2010.0048.
-
(2010)
Philos. Trans. R. Soc. Math. Phys. Eng. Sci.
, vol.368
, pp. 2595-2614
-
-
Hunter, P.1
Coveney, P.V.2
de Bono, B.3
Diaz, V.4
Fenner, J.5
Frangi, A.F.6
Harris, P.7
Hose, R.8
Kohl, P.9
Lawford, P.10
McCormack, K.11
Mendes, M.12
Omholt, S.13
Quarteroni, A.14
Skår, J.15
Tegner, J.16
Randall Thomas, S.17
Tollis, I.18
Tsamardinos, I.19
van Beek, J.H.G.M.20
Viceconti, M.21
more..
-
24
-
-
84875479797
-
Avision and strategy for the virtual physiological human: 2012 update
-
Hunter P., Chapman T., Coveney P.V., Bono B.de, Diaz V., Fenner J., Frangi A.F., Harris P., Hose R., Kohl P., Lawford P., McCormack K., Mendes M., Omholt S., Quarteroni A., Shublaq N., Skår J., Stroetmann K., Tegner J., Thomas S.R., Tollis I., Tsamardinos I., Beek J.H.G.M.van, Viceconti M. Avision and strategy for the virtual physiological human: 2012 update. Interface Focus 2013, 3. 10.1098/rsfs.2013.0004.
-
(2013)
Interface Focus
, vol.3
-
-
Hunter, P.1
Chapman, T.2
Coveney, P.V.3
Bono, B.D.4
Diaz, V.5
Fenner, J.6
Frangi, A.F.7
Harris, P.8
Hose, R.9
Kohl, P.10
Lawford, P.11
McCormack, K.12
Mendes, M.13
Omholt, S.14
Quarteroni, A.15
Shublaq, N.16
Skår, J.17
Stroetmann, K.18
Tegner, J.19
Thomas, S.R.20
Tollis, I.21
Tsamardinos, I.22
Beek, J.H.G.M.V.23
Viceconti, M.24
more..
-
25
-
-
84857392540
-
The case for open computer programs
-
Ince D.C., Hatton L., Graham-Cumming J. The case for open computer programs. Nature 2012, 482:485-488. 10.1038/nature10836.
-
(2012)
Nature
, vol.482
, pp. 485-488
-
-
Ince, D.C.1
Hatton, L.2
Graham-Cumming, J.3
-
26
-
-
4344661328
-
Which model to use for cortical spiking neurons?
-
Izhikevich E.M. Which model to use for cortical spiking neurons?. IEEE Trans. Neural Netw. 2004, 15:1063-1070. 10.1109/TNN.2004.832719.
-
(2004)
IEEE Trans. Neural Netw.
, vol.15
, pp. 1063-1070
-
-
Izhikevich, E.M.1
-
27
-
-
33644527950
-
The model organism as a system: integrating "omics" data sets
-
Joyce A.R., Palsson B.Ø. The model organism as a system: integrating "omics" data sets. Nat. Rev. Mol. Cell. Biol. 2006, 7:198-210. 10.1038/nrm1857.
-
(2006)
Nat. Rev. Mol. Cell. Biol.
, vol.7
, pp. 198-210
-
-
Joyce, A.R.1
Palsson, B.Ø.2
-
28
-
-
84862156032
-
Identifiers.org and MIRIAM registry: community resources to provide persistent identification
-
Juty N., Le Novere N., Laibe C. Identifiers.org and MIRIAM registry: community resources to provide persistent identification. Nucleic Acids Res. 2011, 40:D580-D586. 10.1093/nar/gkr1097.
-
(2011)
Nucleic Acids Res.
, vol.40
, pp. D580-D586
-
-
Juty, N.1
Le Novere, N.2
Laibe, C.3
-
29
-
-
84861974525
-
Automated whole-cell patch-clamp electrophysiology of neurons invivo
-
Kodandaramaiah S.B., Franzesi G.T., Chow B.Y., Boyden E.S., Forest C.R. Automated whole-cell patch-clamp electrophysiology of neurons invivo. Nat. Methods 2012, 9:585-587. 10.1038/nmeth.1993.
-
(2012)
Nat. Methods
, vol.9
, pp. 585-587
-
-
Kodandaramaiah, S.B.1
Franzesi, G.T.2
Chow, B.Y.3
Boyden, E.S.4
Forest, C.R.5
-
30
-
-
80053589530
-
Model interactions: "It is the simple, which is so difficult"
-
Kohl P., Hunter P.J., Winslow R.L. Model interactions: "It is the simple, which is so difficult". Prog. Biophys. Mol. Biol. 2011, 107:1-3. 10.1016/j.pbiomolbio.2011.07.003.
-
(2011)
Prog. Biophys. Mol. Biol.
, vol.107
, pp. 1-3
-
-
Kohl, P.1
Hunter, P.J.2
Winslow, R.L.3
-
31
-
-
84924764807
-
Automated, in-vivo, whole-cell electrophysiology using an integrated patch-clamp amplifier
-
Kolb I., Holst G., Goldstein B., Kodandaramaiah S.B., Boyden E.S., Culurciello E., Forest C.R. Automated, in-vivo, whole-cell electrophysiology using an integrated patch-clamp amplifier. BMC Neurosci. 2013, 14:P131. 10.1186/1471-2202-14-S1-P131.
-
(2013)
BMC Neurosci.
, vol.14
, pp. P131
-
-
Kolb, I.1
Holst, G.2
Goldstein, B.3
Kodandaramaiah, S.B.4
Boyden, E.S.5
Culurciello, E.6
Forest, C.R.7
-
32
-
-
79958510576
-
Mathematical vs. experimental traditions in the development of physical science
-
Kuhn T.S. Mathematical vs. experimental traditions in the development of physical science. J.Interdiscip. Hist. 1976, 7:1-31. 10.2307/202372.
-
(1976)
J.Interdiscip. Hist.
, vol.7
, pp. 1-31
-
-
Kuhn, T.S.1
-
33
-
-
33644877164
-
BioModels database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
-
Le Novere N., Bornstein B., Broicher A., Courtot M., Donizelli M., Dharuri H., Li L., Sauro H., Schilstra M., Shapiro B., Snoep J.L., Hucka M. BioModels database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems. Nucl. Acids Res. 2006, 34:D689-D691. 10.1093/nar/gkj092.
-
(2006)
Nucl. Acids Res.
, vol.34
, pp. D689-D691
-
-
Le Novere, N.1
Bornstein, B.2
Broicher, A.3
Courtot, M.4
Donizelli, M.5
Dharuri, H.6
Li, L.7
Sauro, H.8
Schilstra, M.9
Shapiro, B.10
Snoep, J.L.11
Hucka, M.12
-
34
-
-
84864270397
-
Reproducible research for scientific computing: tools and strategies for changing the culture
-
LeVeque R.J., Mitchell I.M., Stodden V. Reproducible research for scientific computing: tools and strategies for changing the culture. Comput. Sci. Eng. 2012, 14:13.
-
(2012)
Comput. Sci. Eng.
, vol.14
, pp. 13
-
-
LeVeque, R.J.1
Mitchell, I.M.2
Stodden, V.3
-
35
-
-
77953934646
-
BioModels database: an enhanced, curated and annotated resource for published quantitative kinetic models
-
Li C., Donizelli M., Rodriguez N., Dharuri H., Endler L., Chelliah V., Li L., He E., Henry A., Stefan M.I., Snoep J.L., Hucka M., Novère N.L., Laibe C. BioModels database: an enhanced, curated and annotated resource for published quantitative kinetic models. BMC Syst. Biol. 2010, 4:92. 10.1186/1752-0509-4-92.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 92
-
-
Li, C.1
Donizelli, M.2
Rodriguez, N.3
Dharuri, H.4
Endler, L.5
Chelliah, V.6
Li, L.7
He, E.8
Henry, A.9
Stefan, M.I.10
Snoep, J.L.11
Hucka, M.12
Novère, N.L.13
Laibe, C.14
-
36
-
-
51749096446
-
The CellML model repository
-
Lloyd C.M., Lawson J.R., Hunter P.J., Nielsen P.F. The CellML model repository. Bioinformatics 2008, 24:2122-2123. 10.1093/bioinformatics/btn390.
-
(2008)
Bioinformatics
, vol.24
, pp. 2122-2123
-
-
Lloyd, C.M.1
Lawson, J.R.2
Hunter, P.J.3
Nielsen, P.F.4
-
37
-
-
0014331116
-
Statistical significance in psychological research
-
Lykken D.T. Statistical significance in psychological research. Psychol. Bull. 1968, 70:151-159. 10.1037/h0026141.
-
(1968)
Psychol. Bull.
, vol.70
, pp. 151-159
-
-
Lykken, D.T.1
-
38
-
-
84861414911
-
The human brain project
-
Markram H. The human brain project. Sci. Am. 2012, 306:50-55. 10.1038/scientificamerican0612-50.
-
(2012)
Sci. Am.
, vol.306
, pp. 50-55
-
-
Markram, H.1
-
39
-
-
84875998970
-
Chaste: an open source C++ library for computational physiology and biology
-
Mirams G.R., Arthurs C.J., Bernabeu M.O., Bordas R., Cooper J., Corrias A., Davit Y., Dunn S.-J., Fletcher A.G., Harvey D.G., Marsh M.E., Osborne J.M., Pathmanathan P., Pitt-Francis J., Southern J., Zemzemi N., Gavaghan D.J. Chaste: an open source C++ library for computational physiology and biology. PLoS Comput. Biol. 2013, 9:e1002970. 10.1371/journal.pcbi.1002970.
-
(2013)
PLoS Comput. Biol.
, vol.9
, pp. e1002970
-
-
Mirams, G.R.1
Arthurs, C.J.2
Bernabeu, M.O.3
Bordas, R.4
Cooper, J.5
Corrias, A.6
Davit, Y.7
Dunn, S.-J.8
Fletcher, A.G.9
Harvey, D.G.10
Marsh, M.E.11
Osborne, J.M.12
Pathmanathan, P.13
Pitt-Francis, J.14
Southern, J.15
Zemzemi, N.16
Gavaghan, D.J.17
-
42
-
-
84859647631
-
Shining light into black boxes
-
Morin A., Urban J., Adams P.D., Foster I., Sali A., Baker D., Sliz P. Shining light into black boxes. Science 2012, 336:159-160. 10.1126/science.1218263.
-
(2012)
Science
, vol.336
, pp. 159-160
-
-
Morin, A.1
Urban, J.2
Adams, P.D.3
Foster, I.4
Sali, A.5
Baker, D.6
Sliz, P.7
-
43
-
-
50049131641
-
Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model. Prog
-
Nickerson D., Buist M. Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model. Prog. Biophys. Mol. Biol. 2008, 98:38-51. 10.1016/j.pbiomolbio.2008.05.006.
-
(2008)
Biophys. Mol. Biol.
, vol.98
, pp. 38-51
-
-
Nickerson, D.1
Buist, M.2
-
44
-
-
80955172186
-
Verification of cardiac tissue electrophysiology simulators using an N-version benchmark
-
Niederer S.A., Kerfoot E., Benson A.P., Bernabeu M.O., Bernus O., Bradley C., Cherry E.M., Clayton R., Fenton F.H., Garny A., Heidenreich E., Land S., Maleckar M., Pathmanathan P., Plank G., Rodríguez J.F., Roy I., Sachse F.B., Seemann G., Skavhaug O., Smith N.P. Verification of cardiac tissue electrophysiology simulators using an N-version benchmark. Philos. Trans. R. Soc. Math. Phys. Eng. Sci. 2011, 369:4331-4351. 10.1098/rsta.2011.0139.
-
(2011)
Philos. Trans. R. Soc. Math. Phys. Eng. Sci.
, vol.369
, pp. 4331-4351
-
-
Niederer, S.A.1
Kerfoot, E.2
Benson, A.P.3
Bernabeu, M.O.4
Bernus, O.5
Bradley, C.6
Cherry, E.M.7
Clayton, R.8
Fenton, F.H.9
Garny, A.10
Heidenreich, E.11
Land, S.12
Maleckar, M.13
Pathmanathan, P.14
Plank, G.15
Rodríguez, J.F.16
Roy, I.17
Sachse, F.B.18
Seemann, G.19
Skavhaug, O.20
Smith, N.P.21
more..
-
46
-
-
73849164199
-
Amodification of the Hodgkin-Huxley equations applicable to Purkinje fibre action and pacemaker potentials
-
Noble D. Amodification of the Hodgkin-Huxley equations applicable to Purkinje fibre action and pacemaker potentials. J.Physiol. 1962, 160:317-352.
-
(1962)
J.Physiol.
, vol.160
, pp. 317-352
-
-
Noble, D.1
-
47
-
-
84924771396
-
-
def. 3, (accessed 15.04.14.)
-
Oxford English Dictionary online Experiment, N 2014, def. 3, (accessed 15.04.14.). http://www.oed.com/view/Entry/66530.
-
(2014)
Experiment, N
-
-
-
48
-
-
84891690363
-
Ensuring reliability of safety-critical clinical applications of computational cardiac models
-
Pathmanathan P., Gray R.A. Ensuring reliability of safety-critical clinical applications of computational cardiac models. Front. Card. Electrophysiol. 2013, 4:358. 10.3389/fphys.2013.00358.
-
(2013)
Front. Card. Electrophysiol.
, vol.4
, pp. 358
-
-
Pathmanathan, P.1
Gray, R.A.2
-
49
-
-
82755174123
-
Reproducible research in computational science
-
Peng R.D. Reproducible research in computational science. Science 2011, 334:1226-1227. 10.1126/science.1213847.
-
(2011)
Science
, vol.334
, pp. 1226-1227
-
-
Peng, R.D.1
-
51
-
-
78049436203
-
Regression analysis for constraining free parameters in electrophysiological models of cardiac cells
-
Sarkar A.X., Sobie E.A. Regression analysis for constraining free parameters in electrophysiological models of cardiac cells. PLoS Comput. Biol. 2010, 6:e1000914. 10.1371/journal.pcbi.1000914.
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000914
-
-
Sarkar, A.X.1
Sobie, E.A.2
-
52
-
-
34249726073
-
Computational biology of cardiac myocytes: proposed standards for the physiome
-
Smith N.P., Crampin E.J., Niederer S.A., Bassingthwaighte J.B., Beard D.A. Computational biology of cardiac myocytes: proposed standards for the physiome. J.Exp. Biol. 2007, 210:1576-1583. 10.1242/jeb.000133.
-
(2007)
J.Exp. Biol.
, vol.210
, pp. 1576-1583
-
-
Smith, N.P.1
Crampin, E.J.2
Niederer, S.A.3
Bassingthwaighte, J.B.4
Beard, D.A.5
-
53
-
-
62649089030
-
Parameter sensitivity analysis in electrophysiological models using multivariable regression
-
Sobie E.A. Parameter sensitivity analysis in electrophysiological models using multivariable regression. Biophys. J. 2009, 96:1264-1274. 10.1016/j.bpj.2008.10.056.
-
(2009)
Biophys. J.
, vol.96
, pp. 1264-1274
-
-
Sobie, E.A.1
-
54
-
-
28344435526
-
Comparison of electrophysiological models for human ventricular cells and tissues
-
ten Tusscher K.H.W.J., Bernus O., Hren R., Panfilov A.V. Comparison of electrophysiological models for human ventricular cells and tissues. Prog. Biophys. Mol. Biol. 2006, 90:326-345. 10.1016/j.pbiomolbio.2005.05.015.
-
(2006)
Prog. Biophys. Mol. Biol.
, vol.90
, pp. 326-345
-
-
ten Tusscher, K.H.W.J.1
Bernus, O.2
Hren, R.3
Panfilov, A.V.4
-
55
-
-
33846885702
-
Cell model for efficient simulation of wave propagation in human ventricular tissue under normal and pathological conditions
-
ten Tusscher K.H.W.J., Panfilov A.V. Cell model for efficient simulation of wave propagation in human ventricular tissue under normal and pathological conditions. Phys. Med. Biol. 2006, 51:6141. 10.1088/0031-9155/51/23/014.
-
(2006)
Phys. Med. Biol.
, vol.51
, pp. 6141
-
-
ten Tusscher, K.H.W.J.1
Panfilov, A.V.2
-
57
-
-
84924771395
-
From genotype to phenotype
-
Oxford University Press, Oxford, UK, P.V. Coveney, P.J. Hunter, M. Viceconti, D. Noble, V. Diaz (Eds.)
-
Vik J.O., Gjuvsland A.B., de Bono B., Omholt S.W. From genotype to phenotype. Computational Biomedicine 2014, Oxford University Press, Oxford, UK. P.V. Coveney, P.J. Hunter, M. Viceconti, D. Noble, V. Diaz (Eds.).
-
(2014)
Computational Biomedicine
-
-
Vik, J.O.1
Gjuvsland, A.B.2
de Bono, B.3
Omholt, S.W.4
-
58
-
-
79955570036
-
Minimum information about a simulation experiment (MIASE)
-
Waltemath D., Adams R., Beard D.A., Bergmann F.T., Bhalla U.S., Britten R., Chelliah V., Cooling M.T., Cooper J., Crampin E.J., Garny A., Hoops S., Hucka M., Hunter P., Klipp E., Laibe C., Miller A.K., Moraru I., Nickerson D., Nielsen P., Nikolski M., Sahle S., Sauro H.M., Schmidt H., Snoep J.L., Tolle D., Wolkenhauer O., Le Novère N. Minimum information about a simulation experiment (MIASE). PLoS Comput Biol. 2011, 7:e1001122. 10.1371/journal.pcbi.1001122.
-
(2011)
PLoS Comput Biol.
, vol.7
, pp. e1001122
-
-
Waltemath, D.1
Adams, R.2
Beard, D.A.3
Bergmann, F.T.4
Bhalla, U.S.5
Britten, R.6
Chelliah, V.7
Cooling, M.T.8
Cooper, J.9
Crampin, E.J.10
Garny, A.11
Hoops, S.12
Hucka, M.13
Hunter, P.14
Klipp, E.15
Laibe, C.16
Miller, A.K.17
Moraru, I.18
Nickerson, D.19
Nielsen, P.20
Nikolski, M.21
Sahle, S.22
Sauro, H.M.23
Schmidt, H.24
Snoep, J.L.25
Tolle, D.26
Wolkenhauer, O.27
Le Novère, N.28
more..
-
59
-
-
83455162737
-
Reproducible computational biology experiments with SED-ML - the simulation experiment description markup language
-
Waltemath D., Adams R., Bergmann F.T., Hucka M., Kolpakov F., Miller A.K., Moraru I.I., Nickerson D., Sahle S., Snoep J.L., Novère N.L. Reproducible computational biology experiments with SED-ML - the simulation experiment description markup language. BMC Syst. Biol. 2011, 5:198. 10.1186/1752-0509-5-198.
-
(2011)
BMC Syst. Biol.
, vol.5
, pp. 198
-
-
Waltemath, D.1
Adams, R.2
Bergmann, F.T.3
Hucka, M.4
Kolpakov, F.5
Miller, A.K.6
Moraru, I.I.7
Nickerson, D.8
Sahle, S.9
Snoep, J.L.10
Novère, N.L.11
-
60
-
-
84875175386
-
Improving the reuse of computational models through version control
-
Waltemath D., Henkel R., Hälke R., Scharm M., Wolkenhauer O. Improving the reuse of computational models through version control. Bioinformatics 2013, 10.1093/bioinformatics/btt018.
-
(2013)
Bioinformatics
-
-
Waltemath, D.1
Henkel, R.2
Hälke, R.3
Scharm, M.4
Wolkenhauer, O.5
-
63
-
-
79951986255
-
The physiome model repository 2
-
Yu T., Lloyd C.M., Nickerson D.P., Cooling M.T., Miller A.K., Garny A., Terkildsen J.R., Lawson J., Britten R.D., Hunter P.J., Nielsen P.M.F. The physiome model repository 2. Bioinformatics 2011, 27:743-744. 10.1093/bioinformatics/btq723.
-
(2011)
Bioinformatics
, vol.27
, pp. 743-744
-
-
Yu, T.1
Lloyd, C.M.2
Nickerson, D.P.3
Cooling, M.T.4
Miller, A.K.5
Garny, A.6
Terkildsen, J.R.7
Lawson, J.8
Britten, R.D.9
Hunter, P.J.10
Nielsen, P.M.F.11
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