메뉴 건너뛰기




Volumn 107, Issue 1, 2011, Pages 11-20

High-throughput functional curation of cellular electrophysiology models

Author keywords

Cardiac electrophysiology; CellML; Protocol; Simulation

Indexed keywords

CALCIUM CHANNEL L TYPE;

EID: 80053605881     PISSN: 00796107     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbiomolbio.2011.06.003     Document Type: Article
Times cited : (45)

References (67)
  • 1
    • 68949092077 scopus 로고    scopus 로고
    • Optimal velocity and safety of discontinuous conduction through the heterogeneous Purkinje--ventricular junction
    • Aslanidi O.V., Stewart P., Boyett M.R., Zhang H. Optimal velocity and safety of discontinuous conduction through the heterogeneous Purkinje--ventricular junction. Biophysical Kournal 2009, 97:20-39.
    • (2009) Biophysical Kournal , vol.97 , pp. 20-39
    • Aslanidi, O.V.1    Stewart, P.2    Boyett, M.R.3    Zhang, H.4
  • 2
    • 80053611413 scopus 로고    scopus 로고
    • Towards a computational reconstruction of the electrodynamics of premature and full term human labour
    • Atia J., Benson A.P., van den Berg H.A., Blanks A.M., Choi C. Towards a computational reconstruction of the electrodynamics of premature and full term human labour. Prog. Biophys. Mol. Biol. 2011, 107:183-192.
    • (2011) Prog. Biophys. Mol. Biol. , vol.107 , pp. 183-192
    • Atia, J.1    Benson, A.P.2    van den Berg, H.A.3    Blanks, A.M.4    Choi, C.5
  • 3
    • 0034352177 scopus 로고    scopus 로고
    • Strategies for the physiome project
    • Bassingthwaighte J.B. Strategies for the physiome project. Ann. Biomed. Eng. 2000, 28:1043-1058.
    • (2000) Ann. Biomed. Eng. , vol.28 , pp. 1043-1058
    • Bassingthwaighte, J.B.1
  • 5
    • 0017370379 scopus 로고
    • Reconstruction of the action potential of ventricular myocardial fibres
    • Beeler G.W., Reuter H. Reconstruction of the action potential of ventricular myocardial fibres. J. Physiol. 1977, 268:177.
    • (1977) J. Physiol. , vol.268 , pp. 177
    • Beeler, G.W.1    Reuter, H.2
  • 6
    • 80053617191 scopus 로고    scopus 로고
    • A simple nested simulation for SED-ML
    • Bergmann F.T. A simple nested simulation for SED-ML. Nat. Precedings 2010.
    • (2010) Nat. Precedings
    • Bergmann, F.T.1
  • 8
    • 0242555037 scopus 로고    scopus 로고
    • Iverson Software Inc, Toronto, Canada
    • Burke C. J and APL 1996, Iverson Software Inc, Toronto, Canada.
    • (1996) J and APL
    • Burke, C.1
  • 9
    • 33846335191 scopus 로고    scopus 로고
    • A tale of two dogs: analyzing two models of canine ventricular electrophysiology
    • Cherry E., Fenton F. A tale of two dogs: analyzing two models of canine ventricular electrophysiology. Am. J. Physiol. Heart Circulatory Physiol. 2007, 292:H43.
    • (2007) Am. J. Physiol. Heart Circulatory Physiol. , vol.292
    • Cherry, E.1    Fenton, F.2
  • 11
    • 41049084846 scopus 로고    scopus 로고
    • A model-driven approach to automatic conversion of physical units
    • Cooper J., McKeever S. A model-driven approach to automatic conversion of physical units. Softw Pract. Exper 2008, 38:337-359.
    • (2008) Softw Pract. Exper , vol.38 , pp. 337-359
    • Cooper, J.1    McKeever, S.2
  • 13
    • 80053591347 scopus 로고    scopus 로고
    • Considerations for the use of cellular electrophysiology models within cardiac tissue simulations
    • Cooper J., Corrias A., Gavaghan D., Noble D. Considerations for the use of cellular electrophysiology models within cardiac tissue simulations. Prog. Biophys. Mol. Biol. 2011, 107:74-80.
    • (2011) Prog. Biophys. Mol. Biol. , vol.107 , pp. 74-80
    • Cooper, J.1    Corrias, A.2    Gavaghan, D.3    Noble, D.4
  • 14
    • 79955773125 scopus 로고    scopus 로고
    • Ionic mechanisms of electrophysiological properties and repolarization abnormalities in rabbit Purkinje fibers
    • Corrias A., Giles W., Rodriguez B. Ionic mechanisms of electrophysiological properties and repolarization abnormalities in rabbit Purkinje fibers. Am. J. Physiol. Heart Circulatory Physiol. 2011, 300:H1806-H1813.
    • (2011) Am. J. Physiol. Heart Circulatory Physiol. , vol.300
    • Corrias, A.1    Giles, W.2    Rodriguez, B.3
  • 15
    • 33750856807 scopus 로고    scopus 로고
    • Ionic mechanisms underlying human atrial action potential properties: insights from a mathematical model
    • Courtemanche M., Ramirez R.J., Nattel S. Ionic mechanisms underlying human atrial action potential properties: insights from a mathematical model. Am. J. Physiol. Heart Circulatory Physiol. 1998, 275:H301.
    • (1998) Am. J. Physiol. Heart Circulatory Physiol. , vol.275
    • Courtemanche, M.1    Ramirez, R.J.2    Nattel, S.3
  • 16
    • 77951953604 scopus 로고    scopus 로고
    • SBRML: a markup language for associating systems biology data with models
    • Dada J.O., Spasic I., Paton N.W., Mendes P. SBRML: a markup language for associating systems biology data with models. Bioinformatics 2010, 26:932-938.
    • (2010) Bioinformatics , vol.26 , pp. 932-938
    • Dada, J.O.1    Spasic, I.2    Paton, N.W.3    Mendes, P.4
  • 17
    • 66249099909 scopus 로고    scopus 로고
    • Properties and ionic mechanisms of action potential adaptation, restitution, and accommodation in canine epicardium
    • Decker K.F., Heijman J., Silva J.R., Hund T.J., Rudy Y. Properties and ionic mechanisms of action potential adaptation, restitution, and accommodation in canine epicardium. Am. J. Physiol. Heart Circulatory Physiol. 2009, 296:H1017.
    • (2009) Am. J. Physiol. Heart Circulatory Physiol. , vol.296
    • Decker, K.F.1    Heijman, J.2    Silva, J.R.3    Hund, T.J.4    Rudy, Y.5
  • 18
    • 0025351530 scopus 로고
    • A model of the single atrial cell: relation between calcium current and calcium release
    • Earm Y.E., Noble D. A model of the single atrial cell: relation between calcium current and calcium release. Proc. Roy Soc. B. 1990, 240:83-96.
    • (1990) Proc. Roy Soc. B. , vol.240 , pp. 83-96
    • Earm, Y.E.1    Noble, D.2
  • 19
    • 84856962749 scopus 로고    scopus 로고
    • L'échange Na+/Ca2+ dans l'hypertrophie ventriculaire d'altitude chez le rat: Etude electrophysiologique et utilisation du modele " oxsoft heart" Ph.D. thesis. Leon.
    • Espinosa, L.E., 1998. L'échange Na+/Ca2+ dans l'hypertrophie ventriculaire d'altitude chez le rat: Etude electrophysiologique et utilisation du modele " oxsoft heart" Ph.D. thesis. Leon.
    • (1998)
    • Espinosa, L.E.1
  • 20
    • 0034026881 scopus 로고    scopus 로고
    • +]i overloaded cardiac myocytes: a simulation study
    • +]i overloaded cardiac myocytes: a simulation study. Biophysical J. 2000, 78:2392-2404.
    • (2000) Biophysical J. , vol.78 , pp. 2392-2404
    • Faber, G.M.1    Rudy, Y.2
  • 23
    • 1642276819 scopus 로고    scopus 로고
    • Cellular Open Resource (COR): a public CellML based environment for modelling biological function
    • Garny A., Kohl P., Noble D. Cellular Open Resource (COR): a public CellML based environment for modelling biological function. Int. J. Bif Chaos 2003, 13:3579-3590.
    • (2003) Int. J. Bif Chaos , vol.13 , pp. 3579-3590
    • Garny, A.1    Kohl, P.2    Noble, D.3
  • 26
    • 73049094376 scopus 로고    scopus 로고
    • A novel computational model of the human ventricular action potential and ca transient
    • Grandi E., Pasqualini F.S., Bers D.M. A novel computational model of the human ventricular action potential and ca transient. J. Mol. Cellular Cardiol. 2010, 48:112-121.
    • (2010) J. Mol. Cellular Cardiol. , vol.48 , pp. 112-121
    • Grandi, E.1    Pasqualini, F.S.2    Bers, D.M.3
  • 27
    • 0023662820 scopus 로고
    • Excitation-contraction coupling and extracellular calcium transients in rabbit atrium: reconstruction of basic cellular mechanisms
    • Hilgemann D.W., Noble D. Excitation-contraction coupling and extracellular calcium transients in rabbit atrium: reconstruction of basic cellular mechanisms. Proc. Roy Soc. B. 1987, 230:163.
    • (1987) Proc. Roy Soc. B. , vol.230 , pp. 163
    • Hilgemann, D.W.1    Noble, D.2
  • 30
    • 8744246332 scopus 로고    scopus 로고
    • Rate dependence and regulation of action potential and calcium transient in a canine cardiac ventricular cell model
    • Hund T.J., Rudy Y. Rate dependence and regulation of action potential and calcium transient in a canine cardiac ventricular cell model. Circ 2004, 110:3168-3174.
    • (2004) Circ , vol.110 , pp. 3168-3174
    • Hund, T.J.1    Rudy, Y.2
  • 31
    • 33646520142 scopus 로고    scopus 로고
    • 2+ handling and interval-force relations: a modelling study
    • 2+ handling and interval-force relations: a modelling study. Phil Trans. R Soc. A 2006, 364:1107.
    • (2006) Phil Trans. R Soc. A , vol.364 , pp. 1107
    • Iribe, G.1    Kohl, P.2    Noble, D.3
  • 33
    • 4444320725 scopus 로고    scopus 로고
    • A computational model of the human left-ventricular epicardial myocyte
    • Iyer V., Mazhari R., Winslow R.L. A computational model of the human left-ventricular epicardial myocyte. Biophysical J. 2004, 87:1507-1525.
    • (2004) Biophysical J. , vol.87 , pp. 1507-1525
    • Iyer, V.1    Mazhari, R.2    Winslow, R.L.3
  • 34
    • 33846839232 scopus 로고    scopus 로고
    • Mechanisms of abnormal calcium homeostasis in mutations responsible for catecholaminergic polymorphic ventricular tachycardia
    • Iyer V., Hajjar R.J., Armoundas A.A. Mechanisms of abnormal calcium homeostasis in mutations responsible for catecholaminergic polymorphic ventricular tachycardia. Circ. Res. 2007, 100:10-22.
    • (2007) Circ. Res. , vol.100 , pp. 10-22
    • Iyer, V.1    Hajjar, R.J.2    Armoundas, A.A.3
  • 36
    • 57049184135 scopus 로고    scopus 로고
    • SED-ML - an XML format for the implementation of the MIASE guidelines
    • Springer, Berlin/Heidelberg, M. Heiner, A. Uhrmacher (Eds.) Computational Methods in Systems Biology
    • Köhn D., Le Novère N. SED-ML - an XML format for the implementation of the MIASE guidelines. Lecture Notes in Computer Science 2008, vol. 5307:176-190. Springer, Berlin/Heidelberg. M. Heiner, A. Uhrmacher (Eds.).
    • (2008) Lecture Notes in Computer Science , vol.5307 , pp. 176-190
    • Köhn, D.1    Le Novère, N.2
  • 38
    • 84856959091 scopus 로고    scopus 로고
    • A simple scheme for annotating SBML with references to controlled vocabularies and database entries. Online.
    • Le Novère, N., Finney, A., 2005. A simple scheme for annotating SBML with references to controlled vocabularies and database entries. Online.
    • (2005)
    • Le Novère, N.1    Finney, A.2
  • 41
    • 34447525230 scopus 로고    scopus 로고
    • 2+ and electrical alternans in cardiac myocytes: role of CAMKII and repolarizing currents
    • 2+ and electrical alternans in cardiac myocytes: role of CAMKII and repolarizing currents. Am. J. Physiol. Heart Circ. Physiol. 2007, 292:H2854.
    • (2007) Am. J. Physiol. Heart Circ. Physiol. , vol.292
    • Livshitz, L.M.1    Rudy, Y.2
  • 44
    • 0025891531 scopus 로고
    • A model of the ventricular cardiac action potential. Depolarization, repolarization, and their interaction
    • Luo C.H., Rudy Y. A model of the ventricular cardiac action potential. Depolarization, repolarization, and their interaction. Circ. Res. 1991, 68:1501.
    • (1991) Circ. Res. , vol.68 , pp. 1501
    • Luo, C.H.1    Rudy, Y.2
  • 46
    • 0041742200 scopus 로고    scopus 로고
    • Role of individual ionic current systems in ventricular cells hypothesized by a model study
    • Matsuoka S., Sarai N., Kuratomi S., Ono K., Noma A. Role of individual ionic current systems in ventricular cells hypothesized by a model study. Jpn. J. Physiol. 2003, 53:105-123.
    • (2003) Jpn. J. Physiol. , vol.53 , pp. 105-123
    • Matsuoka, S.1    Sarai, N.2    Kuratomi, S.3    Ono, K.4    Noma, A.5
  • 48
    • 0026604055 scopus 로고
    • Dispersion of monophasic action potential duration: demonstrable in humans after premature ventricular extrastimulation but not in steady state
    • Morgan J.M., Cunningham D., Rowland E. Dispersion of monophasic action potential duration: demonstrable in humans after premature ventricular extrastimulation but not in steady state. JACC 1992, 19:1244-1253.
    • (1992) JACC , vol.19 , pp. 1244-1253
    • Morgan, J.M.1    Cunningham, D.2    Rowland, E.3
  • 49
    • 67149141595 scopus 로고    scopus 로고
    • A physiome standards-based model publication paradigm
    • Nickerson D.P., Buist M.L. A physiome standards-based model publication paradigm. Phil Trans. R Soc. A 2009, 367:1823-1844.
    • (2009) Phil Trans. R Soc. A , vol.367 , pp. 1823-1844
    • Nickerson, D.P.1    Buist, M.L.2
  • 50
    • 64749109727 scopus 로고    scopus 로고
    • A meta-analysis of cardiac electrophysiology computational models
    • Niederer S.A., Fink M., Noble D., Smith N.P. A meta-analysis of cardiac electrophysiology computational models. Exp. Physiol. 2009, 94:486-495.
    • (2009) Exp. Physiol. , vol.94 , pp. 486-495
    • Niederer, S.A.1    Fink, M.2    Noble, D.3    Smith, N.P.4
  • 52
    • 0014318908 scopus 로고
    • A graphic method for the study of alternation in cardiac action potentials
    • Nolasco J.B., Dahlen R.W. A graphic method for the study of alternation in cardiac action potentials. J. Appl. Physiol. 1968, 25:191.
    • (1968) J. Appl. Physiol. , vol.25 , pp. 191
    • Nolasco, J.B.1    Dahlen, R.W.2
  • 53
    • 34247500374 scopus 로고    scopus 로고
    • Python for scientific computing
    • Oliphant T.E. Python for scientific computing. Comput. Sci. Eng. 2007, 9:10-20.
    • (2007) Comput. Sci. Eng. , vol.9 , pp. 10-20
    • Oliphant, T.E.1
  • 54
    • 0035200488 scopus 로고    scopus 로고
    • A mathematical model of action potential heterogeneity in adult rat left ventricular myocytes
    • Pandit S.V., Clark R.B., Giles W.R., Demir S.S. A mathematical model of action potential heterogeneity in adult rat left ventricular myocytes. Biophysical J. 2001, 81:3029-3051.
    • (2001) Biophysical J. , vol.81 , pp. 3029-3051
    • Pandit, S.V.1    Clark, R.B.2    Giles, W.R.3    Demir, S.S.4
  • 55
    • 43049164191 scopus 로고    scopus 로고
    • A model of the guinea-pig ventricular cardiac myocyte incorporating a transverse-axial tubular system
    • Pásek M., Simurda J., Orchard C.H., Christé G. A model of the guinea-pig ventricular cardiac myocyte incorporating a transverse-axial tubular system. Prog. Biophys. Mol. Biol. 2008, 96:258-280.
    • (2008) Prog. Biophys. Mol. Biol. , vol.96 , pp. 258-280
    • Pásek, M.1    Simurda, J.2    Orchard, C.H.3    Christé, G.4
  • 57
    • 0032526920 scopus 로고    scopus 로고
    • Simulation study of cellular electric properties in heart failure
    • Priebe L., Beuckelmann D.J. Simulation study of cellular electric properties in heart failure. Circ. Res. 1998, 82:1206.
    • (1998) Circ. Res. , vol.82 , pp. 1206
    • Priebe, L.1    Beuckelmann, D.J.2
  • 58
    • 0034634299 scopus 로고    scopus 로고
    • Distribution of a persistent sodium current across the ventricular wall in guinea pigs
    • Sakmann B.F.A.S., Spindler A.J., Bryant S.M., Linz K.W., Noble D. Distribution of a persistent sodium current across the ventricular wall in guinea pigs. Circ. Res. 2000, 87:910.
    • (2000) Circ. Res. , vol.87 , pp. 910
    • Sakmann, B.F.A.S.1    Spindler, A.J.2    Bryant, S.M.3    Linz, K.W.4    Noble, D.5
  • 59
    • 0242551617 scopus 로고    scopus 로고
    • Single assignment C: efficient support for high-level array operations in a functional setting
    • Scholz S.B. Single assignment C: efficient support for high-level array operations in a functional setting. J. Funct. Programming 2003, 13:1005-1059.
    • (2003) J. Funct. Programming , vol.13 , pp. 1005-1059
    • Scholz, S.B.1
  • 60
    • 16344373083 scopus 로고    scopus 로고
    • A mathematical treatment of integrated Ca dynamics within the ventricular myocyte
    • Shannon T.R., Wang F., Puglisi J., Weber C., Bers D.M. A mathematical treatment of integrated Ca dynamics within the ventricular myocyte. Biophys. J. 2004, 87:3351-3371.
    • (2004) Biophys. J. , vol.87 , pp. 3351-3371
    • Shannon, T.R.1    Wang, F.2    Puglisi, J.3    Weber, C.4    Bers, D.M.5
  • 61
    • 0025829410 scopus 로고
    • A subpopulation of cells with unique electrophysiological properties in the deep subepicardium of the canine ventricle. The M cell
    • Sicouri S., Antzelevitch C. A subpopulation of cells with unique electrophysiological properties in the deep subepicardium of the canine ventricle. The M cell. Circ. Res. 1991, 68:1729.
    • (1991) Circ. Res. , vol.68 , pp. 1729
    • Sicouri, S.1    Antzelevitch, C.2
  • 63
    • 0034668793 scopus 로고    scopus 로고
    • 2+ channel in rat ventricular myocytes: ion selectivity and inactivation mechanisms
    • 2+ channel in rat ventricular myocytes: ion selectivity and inactivation mechanisms. J. Physiol. 2000, 529:139-158.
    • (2000) J. Physiol. , vol.529 , pp. 139-158
    • Sun, L.1    Fan, J.2    Clark, J.3    Palade, P.4
  • 64
  • 66
    • 80053586910 scopus 로고    scopus 로고
    • Cardiac myocytes and local signaling in nano-domains
    • Winslow R.L., Greenstein J.L. Cardiac myocytes and local signaling in nano-domains. Prog. Biophys. Mol. Biol. 2011, 107:48-59.
    • (2011) Prog. Biophys. Mol. Biol. , vol.107 , pp. 48-59
    • Winslow, R.L.1    Greenstein, J.L.2
  • 67
    • 0033583266 scopus 로고    scopus 로고
    • Mechanisms of altered excitation-contraction coupling in canine tachycardia-induced heart failure, II: model studies
    • Winslow R.L., Rice J., Jafri S., Marban E., O'Rourke B. Mechanisms of altered excitation-contraction coupling in canine tachycardia-induced heart failure, II: model studies. Circ. Res. 1999, 84:571.
    • (1999) Circ. Res. , vol.84 , pp. 571
    • Winslow, R.L.1    Rice, J.2    Jafri, S.3    Marban, E.4    O'Rourke, B.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.