Shining light into black boxes

Science

Volumn 336, Issue 6078, 2012, Pages 159-160

  Morin, A ^a   Urban, J ^b   Adams, P D ^c   Foster, I ^d   Sali, A ^e   Baker, D ^f   Sliz, P ^a  

^a HARVARD MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^d ARGONNE NATIONAL LABORATORY   (United States)

^e UNIVERSITY OF CALIFORNIA   (United States)

^f UNIVERSITY OF WASHINGTON   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RESEARCH INSTITUTION; RESEARCH WORK; SOFTWARE; THEORETICAL STUDY;

CLINICAL PRACTICE; COMPUTER PROGRAM; FUNDING; HEALTH CARE POLICY; HEALTH CARE SYSTEM; PRIORITY JOURNAL; PUBLICATION; REPRODUCIBILITY; REPRODUCTION; REVIEW; STRUCTURAL GENOMICS; ACCESS TO INFORMATION; ARTICLE; FINANCIAL MANAGEMENT; INFORMATION DISSEMINATION; INTERPERSONAL COMMUNICATION; POLICY; PUBLISHING; RESEARCH;

ACCESS TO INFORMATION; DISCLOSURE; EDITORIAL POLICIES; INFORMATION DISSEMINATION; PUBLIC POLICY; PUBLISHING; RESEARCH; RESEARCH SUPPORT AS TOPIC; SOFTWARE;

EID: 84859647631     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1218263     Document Type: Review

References (37)

1. D. Weitz, High Tech L. J. (1993); http://heinonlinebackup.com/hol-cgi- bin/get-pdf.cgi?handle=hein.journals/berktech8§ion=13.
2. G. Wilson, Am. Sci. 94(1), 5 (2006).
3. R. S. Tuma, Oncology Times, 7 January 2011 [blog]; http://journals.lww. com/oncology-times/blog/FRESHSCIENCEforClinicians/pages/post.aspx?PostID=10.
4. J. P. Mesirov, Science 327, 415 (2010).
5. J. P. A. Ioannidis, M. J. Khoury, Science 334, 1230 (2011).
6. R. D. Peng, Science 334, 1226 (2011).
7. V. Stodden, Comput. Sci. Eng. 11, 35 (2009).
8. V. Stodden, MIT Sloan School Working Paper 4773-10 (2010); http://papers.ssrn.com/sol3/papers.cfm?abstract-id=1550193.
9. NSF, National Science Foundation; www.nsf.gov/pubs/2011/oise11003/.
10. S. M. Baxter et al., PLOS Comput. Biol. 2, e87 (2006).
11. Z. Merali, Nature 467, 775 (2010).
12. N. Barnes, Nature 467, 753 (2010).
13. R. Litan et al., Yale Law Econ. Res. Paper no. 426; 10.2139/ssrn.1757982. 10.2139/ssrn.1757982
14. PAR-10-266, http://grants.nih.gov/grants/guide/pa-files/PAR-10-266.html.
15. Thomson Reuters, 2010 Journal Citation Reports, Science Edition (Thomson Reuters, Philadelphia, 2012).
16. B. Hanson, A. Sugden, B. Alberts, Science 331, 649 (2011).
17. Editors, J. Biol. Chem.; www.jbc.org/site/misc/edpolicy.xhtml.
18. Editors, Proc. Natl. Acad. Sci. USA; www.pnas.org/site/misc/iforc.shtml.
19. H. A. Piwowar, R. S. Day, D. B. Fridsma, PLoS ONE 2, e308 (2007).
20. The BSD License, www.opensource.org/licenses/bsd-license.php.
21. The MIT License, www.opensource.org/licenses/MIT.
22. D. Greenstein, B. Wheeler, Open Source Collaboration in Higher Education (Indiana Univ., Indianapolis, IN, 2007).
23. F. Hecker, IEEE Softw. 16, 45 (1999).
24. B. N. Sampat, Nature 468, 755 (2010).
25. 32006R1906-Regulation (EC) Official Journal L 391, 30/12/2006 P. 0001i; http://eur-lex.europa.eu/LexUriServ/LexUriServ.do?uri=CELEX:32006R1906:EN:HTML.
26. National Science Foundation, www.nsf.gov/pubs/policy-docs/pappguide/ nsf11001/aag-6.jsp#VID4.
27. National Institutes of Health, Fed. Regist. 64(246), 72090 (1999).
28. T. R. Cech et al., Plant Physiol. 132, 19 (2003).
29. Phenix, www.phenix-online.org/.
30. RosettaCommons, www.rosettacommons.org/.
31. D. C. Ince et al., Nature 482, 485 (2012).
32. F. M. Richards et al., http://hkl.hms.harvard.edu/si/disclosure-letter. pdf.
33. H. Berman, K. Henrick, H. Nakamura, Nat. Struct. Biol. 10, 980 (2003).
34. E. Birney et al., Nature 461, 168 (2009).
35. A. Edwards, Nat. Struct. Mol. Biol. 15, 116 (2008).
36. Editors, PLoS Comput. Biol. (2008); www.ploscompbiol.org/static/policies. action.
37. We thank K. Keating and P. Suber for discussions, and S. K. Burley for providing the document in (32).