메뉴 건너뛰기




Volumn 81, Issue 6, 2015, Pages 2125-2136

Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics

(17)  Alcaide, María a   Tchigvintsev, Anatoli b   Martínez Martínez, Mónica a   Popovic, Ana b   Reva, Oleg N c   Lafraya, Álvaro a,j   Bargiela, Rafael a   Nechitaylo, Taras Y d   Matesanz, Ruth e   Cambon Bonavita, Marie Anne f   Jebbar, Mohamed g   Yakimov, Michail M h   Savchenko, Alexei b   Golyshina, Olga V i   Yakunin, Alexander F b   Golyshin, Peter N i   Ferrer, Manuel a  

a CSIC   (Spain)
h CNR   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ECOSYSTEMS; ESTERS; HOT SPRINGS; SHELLFISH; SUBSTRATES;

EID: 84924692190     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.03387-14     Document Type: Article
Times cited : (33)

References (66)
  • 1
    • 77952317854 scopus 로고    scopus 로고
    • Exploring microbial diversity for biotechnology: the way forward
    • Singh BK. 2010. Exploring microbial diversity for biotechnology: the way forward. Trends Biotechnol 28:111-116. http://dx.doi.org/10.1016/j.tibtech.2009.11.006.
    • (2010) Trends Biotechnol , vol.28 , pp. 111-116
    • Singh, B.K.1
  • 2
    • 84890013578 scopus 로고    scopus 로고
    • Is metagenomics resolving identification of functions in microbial communities?
    • Chistoserdova L. 2014. Is metagenomics resolving identification of functions in microbial communities? Microb Biotechnol 7:1-4. http://dx.doi.org/10.1111/1751-7915.12077.
    • (2014) Microb Biotechnol , vol.7 , pp. 1-4
    • Chistoserdova, L.1
  • 4
    • 84922615973 scopus 로고    scopus 로고
    • Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening
    • 13 August
    • Guazzaroni ME, Silva-Rocha R, Ward RJ. 13 August 2014. Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening. Microb Biotechnol http://dx.doi.org/10.1111/1751-7915.12146.
    • (2014) Microb Biotechnol
    • Guazzaroni, M.E.1    Silva-Rocha, R.2    Ward, R.J.3
  • 14
    • 17444408485 scopus 로고    scopus 로고
    • Cloning, recombinant expression and biochemical characterisation of novel esterases from Bacillus sp. associated with the marine sponge Aplysina aerophoba
    • Karpushova A, Brümmer F, Barth S, Lange S, Schmid RD. 2005. Cloning, recombinant expression and biochemical characterisation of novel esterases from Bacillus sp. associated with the marine sponge Aplysina aerophoba. Appl Microbiol Biotechnol 67:59-69. http://dx.doi.org/10.1007/s00253-004-1780-6.
    • (2005) Appl Microbiol Biotechnol , vol.67 , pp. 59-69
    • Karpushova, A.1    Brümmer, F.2    Barth, S.3    Lange, S.4    Schmid, R.D.5
  • 15
    • 77954953021 scopus 로고    scopus 로고
    • Isolation and characterization of a GDSL esterase from the metagenome of a marine sponge-associated bacteria
    • Okamura Y, Kimura T, Yokouchi H, Meneses-Osorio M, Katoh M, Matsunaga T, Takeyama H. 2010. Isolation and characterization of a GDSL esterase from the metagenome of a marine sponge-associated bacteria. Mar Biotechnol 12:395-402. http://dx.doi.org/10.1007/s10126-009-9226-x.
    • (2010) Mar Biotechnol , vol.12 , pp. 395-402
    • Okamura, Y.1    Kimura, T.2    Yokouchi, H.3    Meneses-Osorio, M.4    Katoh, M.5    Matsunaga, T.6    Takeyama, H.7
  • 16
    • 84861716212 scopus 로고    scopus 로고
    • Isolation identification and biochemical characterization of a novel halo-tolerant lipase from the metagenome of the marine sponge Haliclona simulans
    • Selvin J, Kennedy J, Lejon DP, Kiran GS, Dobson AD. 2012. Isolation identification and biochemical characterization of a novel halo-tolerant lipase from the metagenome of the marine sponge Haliclona simulans. Microb Cell Fact 11:72. http://dx.doi.org/10.1186/1475-2859-11-72.
    • (2012) Microb Cell Fact , vol.11 , pp. 72
    • Selvin, J.1    Kennedy, J.2    Lejon, D.P.3    Kiran, G.S.4    Dobson, A.D.5
  • 17
    • 79952213687 scopus 로고    scopus 로고
    • Screening and characterization of a cellulase gene from the gut microflora of abalone using metagenomic library
    • Kim D, Kim SN, Baik KS, Park SC, Lim CH, Kim JO, Shin TS, Oh MJ, Seong CN. 2011. Screening and characterization of a cellulase gene from the gut microflora of abalone using metagenomic library. J Microbiol 49:141-145. http://dx.doi.org/10.1007/s12275-011-0205-3.
    • (2011) J Microbiol , vol.49 , pp. 141-145
    • Kim, D.1    Kim, S.N.2    Baik, K.S.3    Park, S.C.4    Lim, C.H.5    Kim, J.O.6    Shin, T.S.7    Oh, M.J.8    Seong, C.N.9
  • 18
    • 84863497303 scopus 로고    scopus 로고
    • Characterization of alginate lyase gene using a metagenomic library constructed from the gut microflora of abalone
    • Sim SJ, Baik KS, Park SC, Choe HN, Seong CN, Shin TS, Woo HC, Cho JY, Kim D. 2012. Characterization of alginate lyase gene using a metagenomic library constructed from the gut microflora of abalone. J Ind Microbiol Biotechnol 39:585-593. http://dx.doi.org/10.1007/s10295-011-1054-0.
    • (2012) J Ind Microbiol Biotechnol , vol.39 , pp. 585-593
    • Sim, S.J.1    Baik, K.S.2    Park, S.C.3    Choe, H.N.4    Seong, C.N.5    Shin, T.S.6    Woo, H.C.7    Cho, J.Y.8    Kim, D.9
  • 22
    • 79251542065 scopus 로고    scopus 로고
    • Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata
    • Hügler M, Petersen JM, Dubilier N, Imhoff JF, Sievert SM. 2011. Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata. PLoS One 6:e16018. http://dx.doi.org/10.1371/journal.pone.0016018.
    • (2011) PLoS One , vol.6
    • Hügler, M.1    Petersen, J.M.2    Dubilier, N.3    Imhoff, J.F.4    Sievert, S.M.5
  • 23
    • 84857115395 scopus 로고    scopus 로고
    • Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata
    • Guri M, Durand L, Cueff-Gauchard V, Zbinden M, Crassous P, Shillito B, Cambon-Bonavita MA. 2012. Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata. ISME J 6:597-609. http://dx.doi.org/10.1038/ismej.2011.133.
    • (2012) ISME J , vol.6 , pp. 597-609
    • Guri, M.1    Durand, L.2    Cueff-Gauchard, V.3    Zbinden, M.4    Crassous, P.5    Shillito, B.6    Cambon-Bonavita, M.A.7
  • 25
    • 78650148500 scopus 로고    scopus 로고
    • New insight into the contributions of thermogenic processes and biogenic sources to the generation of organic compounds in hydrothermal fluids
    • Konn C, Testemale D, Querellou J, Holm NG, Charlou JL. 2011. New insight into the contributions of thermogenic processes and biogenic sources to the generation of organic compounds in hydrothermal fluids. Geobiology 9:79-93. http://dx.doi.org/10.1111/j.1472-4669.2010.00260.x.
    • (2011) Geobiology , vol.9 , pp. 79-93
    • Konn, C.1    Testemale, D.2    Querellou, J.3    Holm, N.G.4    Charlou, J.L.5
  • 26
    • 84873192413 scopus 로고    scopus 로고
    • The second skin: ecological role of epibiotic biofilms on marine organisms
    • Wahl M, Goecke F, Labes A, Dobretsov S, Weinberger F. 2012. The second skin: ecological role of epibiotic biofilms on marine organisms. Front Microbiol 3:292. http://dx.doi.org/10.3389/fmicb.2012.00292.
    • (2012) Front Microbiol , vol.3 , pp. 292
    • Wahl, M.1    Goecke, F.2    Labes, A.3    Dobretsov, S.4    Weinberger, F.5
  • 29
    • 84876720316 scopus 로고    scopus 로고
    • Biocatalysis enters a new era
    • Turner NJ, Truppo MD. 2013. Biocatalysis enters a new era. Curr Opin Chem Biol 17:212-214. http://dx.doi.org/10.1016/j.cbpa.2013.02.026.
    • (2013) Curr Opin Chem Biol , vol.17 , pp. 212-214
    • Turner, N.J.1    Truppo, M.D.2
  • 30
    • 84859941711 scopus 로고    scopus 로고
    • Functional-based screening methods for lipases esterases and phospholipases in metagenomic libraries
    • Reyes-Duarte D, Ferrer M, García-Arellano H. 2012. Functional-based screening methods for lipases esterases and phospholipases in metagenomic libraries. Methods Mol Biol 861:101-113. http://dx.doi.org/10.1007/978-1-61779-600-5_6.
    • (2012) Methods Mol Biol , vol.861 , pp. 101-113
    • Reyes-Duarte, D.1    Ferrer, M.2    García-Arellano, H.3
  • 31
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: new solutions for gene finding
    • Lukashin AV, Borodovsky M. 1998. GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res 26:1107-1115. http://dx.doi.org/10.1093/nar/26.4.1107.
    • (1998) Nucleic Acids Res , vol.26 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 33
    • 0002051540 scopus 로고    scopus 로고
    • Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA. 1999. Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 34
    • 0000207681 scopus 로고
    • TMbase-a database of membrane spanning proteins segments
    • Hofmann K, Stoffel W. 1993. TMbase-a database of membrane spanning proteins segments. Biol Chem Hoppe-Seyler 374:166.
    • (1993) Biol Chem Hoppe-Seyler , vol.374 , pp. 166
    • Hofmann, K.1    Stoffel, W.2
  • 35
    • 0002846347 scopus 로고    scopus 로고
    • Measuring the conformational stability of a protein
    • Creighton TE (ed), IRL Press at Oxford University Press, Oxford, United Kingdom
    • Pace N, Scholtz JM. 1997. Measuring the conformational stability of a protein, p 299-322. In Creighton TE (ed), Protein structure: a practical approach. IRL Press at Oxford University Press, Oxford, United Kingdom.
    • (1997) Protein structure: a practical approach , pp. 299-322
    • Pace, N.1    Scholtz, J.M.2
  • 36
    • 0002518285 scopus 로고    scopus 로고
    • Optical spectroscopy to characterize protein conformation
    • Creighton TE (ed), IRL Press at Oxford University Press, Oxford, United Kingdom
    • Schmid FZ. 1997. Optical spectroscopy to characterize protein conformation, p 261-298. In Creighton TE (ed), Protein structure: a practical approach. IRL Press at Oxford University Press, Oxford, United Kingdom.
    • (1997) Protein structure: a practical approach , pp. 261-298
    • Schmid, F.Z.1
  • 39
    • 0034199476 scopus 로고    scopus 로고
    • The Sequence Manipulation Suite: JavaScript programs for analyzing and formatting protein and DNA sequences
    • Stothard P. 2000. The Sequence Manipulation Suite: JavaScript programs for analyzing and formatting protein and DNA sequences. Biotechniques 28:1102-1104.
    • (2000) Biotechniques , vol.28 , pp. 1102-1104
    • Stothard, P.1
  • 40
    • 84860448420 scopus 로고    scopus 로고
    • GOHTAM: a website for genomic origin of horizontal transfers, alignment and metagenomics
    • Ménigaud S, Mallet L, Picord G, Churlaud C, Borrel A, Deschavanne P. 2012. GOHTAM: a website for genomic origin of horizontal transfers, alignment and metagenomics. Bioinformatics 28:1270-1271. http://dx.doi.org/10.1093/bioinformatics/bts118.
    • (2012) Bioinformatics , vol.28 , pp. 1270-1271
    • Ménigaud, S.1    Mallet, L.2    Picord, G.3    Churlaud, C.4    Borrel, A.5    Deschavanne, P.6
  • 41
    • 67649083891 scopus 로고    scopus 로고
    • Measure of synonymous codon usage diversity among genes in bacteria
    • Suzuki H, Saito R, Tomita M. 2009. Measure of synonymous codon usage diversity among genes in bacteria. BMC Bioinformatics 10:167. http://dx.doi.org/10.1186/1471-2105-10-167.
    • (2009) BMC Bioinformatics , vol.10 , pp. 167
    • Suzuki, H.1    Saito, R.2    Tomita, M.3
  • 42
    • 51549120596 scopus 로고    scopus 로고
    • The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage
    • Ganesan H, Rakitianskaia AS, Davenport CF, Tümmler B, Reva ON. 2008. The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage. BMC Bioinformatics 9:333. http://dx.doi.org/10.1186/1471-2105-9-333.
    • (2008) BMC Bioinformatics , vol.9 , pp. 333
    • Ganesan, H.1    Rakitianskaia, A.S.2    Davenport, C.F.3    Tümmler, B.4    Reva, O.N.5
  • 43
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: a multiple sequence alignment method with reduced time and space complexity
    • Edgar RC. 2004. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. http://dx.doi.org/10.1186/1471-2105-5-113.
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 44
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular Evolutionary Genetics Analysis version 6.0
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30: 2725-2729. http://dx.doi.org/10.1093/molbev/mst197.
    • (2013) Mol Biol Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 46
    • 0033214082 scopus 로고    scopus 로고
    • Bacterial lipolytic enzymes: classification and properties
    • Arpigny JL, Jaeger KE. 1999. Bacterial lipolytic enzymes: classification and properties. Biochem J 343:177-183. http://dx.doi.org/10.1042/0264-6021:3430177.
    • (1999) Biochem J , vol.343 , pp. 177-183
    • Arpigny, J.L.1    Jaeger, K.E.2
  • 49
    • 0032748483 scopus 로고    scopus 로고
    • Phylogenetic relationships of filamentous sulfur bacteria (Thiothrix sp. and Eikelboom type 021N bacteria) isolated from wastewater-treatment plants and description of Thiothrix eikelboomii sp. nov., Thiothrix unzii sp. nov., Thiothrix fructosivorans sp. nov. and Thiothrix defluvii sp. nov
    • Howarth R, Unz RF, Seviour EM, Seviour RJ, Blackall LL, Pickup RW, Jones JG, Yaguchi J, Head IM. 1999. Phylogenetic relationships of filamentous sulfur bacteria (Thiothrix spp. and Eikelboom type 021N bacteria) isolated from wastewater-treatment plants and description of Thiothrix eikelboomii sp. nov., Thiothrix unzii sp. nov., Thiothrix fructosivorans sp. nov. and Thiothrix defluvii sp. nov. Int J Syst Bacteriol 4:1817-1827.
    • (1999) Int J Syst Bacteriol , vol.4 , pp. 1817-1827
    • Howarth, R.1    Unz, R.F.2    Seviour, E.M.3    Seviour, R.J.4    Blackall, L.L.5    Pickup, R.W.6    Jones, J.G.7    Yaguchi, J.8    Head, I.M.9
  • 50
    • 0343274682 scopus 로고    scopus 로고
    • The genus Leucothrix
    • Brock TD. 2006. The genus Leucothrix. Prokaryotes 6:931-938.
    • (2006) Prokaryotes , vol.6 , pp. 931-938
    • Brock, T.D.1
  • 52
    • 25844525807 scopus 로고    scopus 로고
    • Improving the catalytic activity of Candida antarctica lipase B by circular permutation
    • Qian Z, Lutz S. 2005. Improving the catalytic activity of Candida antarctica lipase B by circular permutation. J Am Chem Soc 127:13466-13467. http://dx.doi.org/10.1021/ja053932h.
    • (2005) J Am Chem Soc , vol.127 , pp. 13466-13467
    • Qian, Z.1    Lutz, S.2
  • 57
    • 0032774441 scopus 로고    scopus 로고
    • Lithoheterotrophic growth and electron transfer chain components of the filamentous gliding bacterium Leucothrix mucor DSM 2157 during oxidation of sulfur compounds
    • Grabovich MY, Muntyan MS, Lebedeva VY, Ustiyan VS, Dubinina GA. 1999. Lithoheterotrophic growth and electron transfer chain components of the filamentous gliding bacterium Leucothrix mucor DSM 2157 during oxidation of sulfur compounds. FEMS Microbiol Rev 178:155-161. http://dx.doi.org/10.1111/j.1574-6968.1999.tb13772.x.
    • (1999) FEMS Microbiol Rev , vol.178 , pp. 155-161
    • Grabovich, M.Y.1    Muntyan, M.S.2    Lebedeva, V.Y.3    Ustiyan, V.S.4    Dubinina, G.A.5
  • 58
    • 33846247798 scopus 로고    scopus 로고
    • Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment
    • Hårdeman F, Sjöling S. 2007. Metagenomic approach for the isolation of a novel low-temperature-active lipase from uncultured bacteria of marine sediment. FEMS Microbiol Ecol 59:524-534. http://dx.doi.org/10.1111/j.1574-6941.2006.00206.x.
    • (2007) FEMS Microbiol Ecol , vol.59 , pp. 524-534
    • Hårdeman, F.1    Sjöling, S.2
  • 59
  • 61
    • 0026250066 scopus 로고
    • Characterization of Pseudomonas fluorescens carboxylesterase: cloning and expression of the esterase gene in Escherichia coli
    • Hong KH, Jang WH, Choi KD, Yoo OJ. 1991. Characterization of Pseudomonas fluorescens carboxylesterase: cloning and expression of the esterase gene in Escherichia coli. Agric Biol Chem 55:2839-2845. http://dx.doi.org/10.1271/bbb1961.55.2839.
    • (1991) Agric Biol Chem , vol.55 , pp. 2839-2845
    • Hong, K.H.1    Jang, W.H.2    Choi, K.D.3    Yoo, O.J.4
  • 62
    • 0035146093 scopus 로고    scopus 로고
    • Genetic and biochemical characterization of a novel monoterpene epsilon-lactone hydrolase from Rhodococcus erythropolis DCL14
    • van der Vlugt-Bergmans CJ, van der Werf MJ. 2001. Genetic and biochemical characterization of a novel monoterpene epsilon-lactone hydrolase from Rhodococcus erythropolis DCL14. Appl Environ Microbiol 67:733-741. http://dx.doi.org/10.1128/AEM.67.2.733-741.2001.
    • (2001) Appl Environ Microbiol , vol.67 , pp. 733-741
    • van der Vlugt-Bergmans, C.J.1    van der Werf, M.J.2
  • 65
    • 0035010702 scopus 로고    scopus 로고
    • Lipase catalysed synthesis of optically enriched α-haloamides
    • Azim A, Sharma SK, Olsen CE, Parmar VS. 2001. Lipase catalysed synthesis of optically enriched α-haloamides. Bioorg Med Chem 9:1345-1348. http://dx.doi.org/10.1016/S0968-0896(01)00006-2.
    • (2001) Bioorg Med Chem , vol.9 , pp. 1345-1348
    • Azim, A.1    Sharma, S.K.2    Olsen, C.E.3    Parmar, V.S.4
  • 66
    • 0842297075 scopus 로고    scopus 로고
    • Lipasecatalyzed selective benzoylation of 1,2-diols with vinyl benzoate in organic solvents
    • Ciffreda P, Alessandrini L, Terraneo G, Santaniello E. 2003. Lipasecatalyzed selective benzoylation of 1,2-diols with vinyl benzoate in organic solvents. Tetrahedron Asymmetr 14:3197-3201. http://dx.doi.org/10.1016/j.tetasy.2003.07.003.
    • (2003) Tetrahedron Asymmetr , vol.14 , pp. 3197-3201
    • Ciffreda, P.1    Alessandrini, L.2    Terraneo, G.3    Santaniello, E.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.