메뉴 건너뛰기




Volumn 28, Issue 9, 2012, Pages 1270-1271

GOHTAM: A website for 'genomic origin of horizontal transfers, alignment and metagenomics'

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; BACTERIUM; CLASSIFICATION; DNA SEQUENCE; GENETICS; GENOME; HORIZONTAL GENE TRANSFER; METAGENOMICS; METHODOLOGY; PHYLOGENY; SEQUENCE ALIGNMENT;

EID: 84860448420     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts118     Document Type: Article
Times cited : (22)

References (13)
  • 1
    • 34547905383 scopus 로고    scopus 로고
    • Detecting laterally transferred genes: use of entropic clustering methods and genome position
    • Azad, R.K. and LawrenceJ.G. (2007) Detecting laterally transferred genes: use of entropic clustering methods and genome position. Nucleic Acids Res., 35, 4629-4639.
    • (2007) Nucleic Acids Res , vol.35 , pp. 4629-4639
    • Azad, R.K.1    Lawrence, J.G.2
  • 2
    • 77956300523 scopus 로고    scopus 로고
    • A benchmark of parametric methods for horizontal transfers detection
    • Becq, J. et al. (2010) 'A benchmark of parametric methods for horizontal transfers detection'. PLoS ONE, 5, e9989.
    • (2010) PLoS ONE , vol.5
    • Becq, J.1
  • 3
    • 28844458060 scopus 로고    scopus 로고
    • Exploration of phylogenetic data using a global sequence analysis method
    • Chapus, C. et al. (2005) 'Exploration of phylogenetic data using a global sequence analysis method' BMC Evol. Biol., 5, 63-83.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 63-83
    • Chapus, C.1
  • 4
    • 0033153375 scopus 로고    scopus 로고
    • Alignment of whole genomes
    • Delcher, A.L. et al. (1999) 'Alignment of whole genomes' Nucleic Acids Res, 27, 2369-2376.
    • (1999) Nucleic Acids Res , vol.27 , pp. 2369-2376
    • Delcher, A.L.1
  • 5
    • 0032823783 scopus 로고    scopus 로고
    • Genomic signature: characterization and classification of species assessed by Chaos Game Representation of sequences
    • Deschavanne, P.J. et al. (1999). 'Genomic signature: characterization and classification of species assessed by Chaos Game Representation of sequences'. Mol. Biol. Evol., 16, 1391-1399.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1391-1399
    • Deschavanne, P.J.1
  • 6
    • 19744383764 scopus 로고    scopus 로고
    • Detection and characterization of horizontal transfers in prokaryotes using genomic signature
    • Dufraigne, C. et al. (2005) 'Detection and characterization of horizontal transfers in prokaryotes using genomic signature'. Nucleic Acids Res., 33, e6.
    • (2005) Nucleic Acids Res , vol.33
    • Dufraigne, C.1
  • 8
    • 47649104484 scopus 로고    scopus 로고
    • Horizontal gene transfer in eukaryotic evolution
    • Keeling, P.J. and Palmer, J.D. (2008) 'Horizontal gene transfer in eukaryotic evolution'. Nat. Rev. Genet., 9, 605-618.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 605-618
    • Keeling, P.J.1    Palmer, J.D.2
  • 9
    • 77949467943 scopus 로고    scopus 로고
    • Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus
    • Mallet, L.V. et al. (2010) 'Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus'. BMC Genomics, 11, 171.
    • (2010) BMC Genomics , vol.11 , pp. 171
    • Mallet, L.V.1
  • 10
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H. et al. (2000) 'Lateral gene transfer and the nature of bacterial innovation'. Nature, 405, 299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1
  • 11
    • 0034887748 scopus 로고    scopus 로고
    • Capturing whole-genome characteristics in short sequences using a naïve bayesian classifier
    • Sandberg, R. et al. (2001). 'Capturing whole-genome characteristics in short sequences using a naïve bayesian classifier' Genome Res., 11, 1404-1409.
    • (2001) Genome Res. , vol.11 , pp. 1404-1409
    • Sandberg, R.1
  • 12
    • 13244253777 scopus 로고    scopus 로고
    • TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNAsequences
    • Teeling, H. et al. (2004) 'TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNAsequences'. BMC Bioinformatics, 5, 163.
    • (2004) BMC Bioinformatics , vol.5 , pp. 163
    • Teeling, H.1
  • 13
    • 21444456620 scopus 로고    scopus 로고
    • Deltarho-web, an online tool to assess composition similarity of individual nucleic acid sequences
    • van Passel, M.W. et al. (2005) 'Deltarho-web, an online tool to assess composition similarity of individual nucleic acid sequences'. Bioinformatics, 21, 3053-3055.
    • (2005) Bioinformatics , vol.21 , pp. 3053-3055
    • van Passel, M.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.