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Volumn 16, Issue 2, 2015, Pages 317-324

Network-based approach to identify prognostic biomarkers for estrogen receptor-positive breast cancer treatment with tamoxifen

Author keywords

Biomarker; Breast cancer; Gene expression profiling; Systems biology; Tamoxifen resistance

Indexed keywords

BIOLOGICAL MARKER; MESSENGER RNA; TAMOXIFEN; ESTROGEN RECEPTOR; TUMOR MARKER;

EID: 84924629128     PISSN: 15384047     EISSN: 15558576     Source Type: Journal    
DOI: 10.1080/15384047.2014.1002360     Document Type: Article
Times cited : (59)

References (44)
  • 1
    • 84881415504 scopus 로고    scopus 로고
    • A renewable tissue resource of phenotypically stable, biologically and ethnically diverse, patient-derived human breast cancer xenograft models
    • PMID:23737486
    • Zhang X, Claerhout S, Prat A, Dobrolecki LE, Petrovic I, Lai Q, Landis MD, Wiechmann L, Schiff R, Giuliano M, et al. A renewable tissue resource of phenotypically stable, biologically and ethnically diverse, patient-derived human breast cancer xenograft models. Cancer Res 2013; 73:4885-97; PMID:23737486; http://dx.doi.org/10.1158/0008-5472.CAN-12-4081
    • (2013) Cancer Res , vol.73 , pp. 4885-4897
    • Zhang, X.1    Claerhout, S.2    Prat, A.3    Dobrolecki, L.E.4    Petrovic, I.5    Lai, Q.6    Landis, M.D.7    Wiechmann, L.8    Schiff, R.9    Giuliano, M.10
  • 3
    • 34447507710 scopus 로고    scopus 로고
    • A20/TNFAIP3, a new estrogen-regulated gene that confers tamoxifen resistance in breast cancer cells
    • PMID:17297453
    • Vendrell JA, Ghayad S, Ben-Larbi S, Dumontet C, Mechti N, Cohen PA. A20/TNFAIP3, a new estrogen-regulated gene that confers tamoxifen resistance in breast cancer cells. Oncogene 2007; 26:4656-67; PMID:17297453; http://dx.doi.org/10.1038/sj.onc.1210269
    • (2007) Oncogene , vol.26 , pp. 4656-4667
    • Vendrell, J.A.1    Ghayad, S.2    Ben-Larbi, S.3    Dumontet, C.4    Mechti, N.5    Cohen, P.A.6
  • 4
    • 0141993704 scopus 로고    scopus 로고
    • A gene-coexpression network for global discovery of conserved genetic modules
    • PMID:12934013
    • Stuart JM, Segal E, Koller D, Kim SK. A gene-coexpression network for global discovery of conserved genetic modules. Science 2003; 302:249-55; PMID:12934013; http://dx.doi.org/10.1126/science.1087447
    • (2003) Science , vol.302 , pp. 249-255
    • Stuart, J.M.1    Segal, E.2    Koller, D.3    Kim, S.K.4
  • 7
    • 78650392923 scopus 로고    scopus 로고
    • Coexpression network analysis identifies transcriptional modules related to proastrocytic differentiation and sprouty signaling in glioma
    • PMID:21159630
    • Ivliev AE, t Hoen PA, Sergeeva MG. Coexpression network analysis identifies transcriptional modules related to proastrocytic differentiation and sprouty signaling in glioma. Cancer Res 2010; 70:10060-70; PMID:21159630; http://dx.doi.org/10.1158/0008-5472.CAN-10-2465
    • (2010) Cancer Res , vol.70 , pp. 10060-10070
    • Ivliev, A.E.1    T Hoen, P.A.2    Sergeeva, M.G.3
  • 8
    • 58149330982 scopus 로고    scopus 로고
    • Meta-analysis of gene expression profiles in breast cancer: Toward a unified understanding of breast cancer subtyping and prognosis signatures
    • PMID:18662380
    • Wirapati P, Sotiriou C, Kunkel S, Farmer P, Pradervand S, Haibe-Kains B, Desmedt C, Ignatiadis M, Sengstag T, Schutz F, et al. Meta-analysis of gene expression profiles in breast cancer: toward a unified understanding of breast cancer subtyping and prognosis signatures. Breast Cancer Res 2008; 10:28; PMID:18662380; http://dx.doi.org/10.1186/bcr2124
    • (2008) Breast Cancer Res , vol.10 , pp. 28
    • Wirapati, P.1    Sotiriou, C.2    Kunkel, S.3    Farmer, P.4    Pradervand, S.5    Haibe-Kains, B.6    Desmedt, C.7    Ignatiadis, M.8    Sengstag, T.9    Schutz, F.10
  • 10
    • 33645786788 scopus 로고    scopus 로고
    • Regulation of hypothalamic gene expression by glucocorticoid: Implications for energy homeostasis
    • PMID:16368873
    • Nishida Y, Yoshioka M, St-Amand J. Regulation of hypothalamic gene expression by glucocorticoid: implications for energy homeostasis. Physiol Genomics 2006; 25:96-104; PMID:16368873; http://dx.doi.org/10.1152/physiolgenomics.00232.2005
    • (2006) Physiol Genomics , vol.25 , pp. 96-104
    • Nishida, Y.1    Yoshioka, M.2    St-Amand, J.3
  • 13
    • 19344364880 scopus 로고    scopus 로고
    • Effects of chemotherapy and hormonal therapy for early breast cancer on recurrence and 15-year survival: An overview of the randomised trials
    • EBCTCG PMID:15894097
    • (EBCTCG). EBCTCG. Effects of chemotherapy and hormonal therapy for early breast cancer on recurrence and 15-year survival: an overview of the randomised trials. Lancet 2005; 365:1687-717; PMID:15894097; http://dx.doi.org/10.1016/S0140-6736(05)66544-0
    • (2005) Lancet , vol.365 , pp. 1687-1717
  • 15
    • 33746908103 scopus 로고    scopus 로고
    • Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome
    • PMID:16849584
    • Frasor J, Chang EC, KommB, Lin CY, Vega VB, Liu ET, Miller LD, Smeds J, Bergh J, Katzenellenbogen BS. Gene expression preferentially regulated by tamoxifen in breast cancer cells and correlations with clinical outcome. Cancer Res 2006; 66:7334-40; PMID:16849584; http://dx.doi.org/10.1158/0008-5472.CAN-05-4269
    • (2006) Cancer Res , vol.66 , pp. 7334-7340
    • Frasor, J.1    Chang, E.C.2    Komm, B.3    Lin, C.Y.4    Vega, V.B.5    Liu, E.T.6    Miller, L.D.7    Smeds, J.8    Bergh, J.9    Katzenellenbogen, B.S.10
  • 16
    • 33846207899 scopus 로고    scopus 로고
    • Diverse gene expression and DNA methylation profiles correlate with differential adaptation of breast cancer cells to the antiestrogens tamoxifen and fulvestrant
    • PMID:17178894
    • Fan M, Yan PS, Hartman-Frey C, Chen L, Paik H, Oyer SL, Salisbury JD, Cheng AS, Li L, Abbosh PH, et al. Diverse gene expression and DNA methylation profiles correlate with differential adaptation of breast cancer cells to the antiestrogens tamoxifen and fulvestrant. Cancer Res 2006; 66:11954-66; PMID:17178894; http://dx.doi.org/10.1158/0008-5472.CAN-06-1666
    • (2006) Cancer Res , vol.66 , pp. 11954-11966
    • Fan, M.1    Yan, P.S.2    Hartman-Frey, C.3    Chen, L.4    Paik, H.5    Oyer, S.L.6    Salisbury, J.D.7    Cheng, A.S.8    Li, L.9    Abbosh, P.H.10
  • 19
    • 84884704047 scopus 로고    scopus 로고
    • Prediction of late distant recurrence in patients with oestrogen-receptor-positive breast cancer: A prospective comparison of the breast-cancer index (BCI) assay, 21-gene recurrence score, and IHC4 in the TransATAC study population
    • PMID:24035531
    • Sgroi DC, Sestak I, Cuzick J, Zhang Y, Schnabel CA, Schroeder B, Erlander MG, Dunbier A, Sidhu K, Lopez-Knowles E, et al. Prediction of late distant recurrence in patients with oestrogen-receptor-positive breast cancer: a prospective comparison of the breast-cancer index (BCI) assay, 21-gene recurrence score, and IHC4 in the TransATAC study population. Lancet Oncol 2013; 14:1067-76; PMID:24035531; http://dx.doi.org/10.1016/S1470-2045(13)70387-5
    • (2013) Lancet Oncol , vol.14 , pp. 1067-1076
    • Sgroi, D.C.1    Sestak, I.2    Cuzick, J.3    Zhang, Y.4    Schnabel, C.A.5    Schroeder, B.6    Erlander, M.G.7    Dunbier, A.8    Sidhu, K.9    Lopez-Knowles, E.10
  • 20
    • 84871357085 scopus 로고    scopus 로고
    • deltaEF1 down-regulates ER-alpha expression and confers tamoxifen resistance in breast cancer
    • PMID:23285017
    • Guo S, Li Y, Tong Q, Gu F, Zhu T, Fu L, Yang S. deltaEF1 down-regulates ER-alpha expression and confers tamoxifen resistance in breast cancer. PloS one 2012; 7:e52380; PMID:23285017; http://dx.doi.org/10.1371/journal.pone.0052380
    • (2012) PloS One , vol.7 , pp. e52380
    • Guo, S.1    Li, Y.2    Tong, Q.3    Gu, F.4    Zhu, T.5    Fu, L.6    Yang, S.7
  • 22
    • 84898755961 scopus 로고    scopus 로고
    • CCNA2 is a prognostic biomarker for ER+ breast cancer and tamoxifen resistance
    • e91771 PMID:24622579
    • Gao T, Han Y, Yu L, Ao S, Li Z, Ji J. CCNA2 is a prognostic biomarker for ER+ breast cancer and tamoxifen resistance. PloS One 2014; 9:e91771; PMID:24622579; http://dx.doi.org/10.1371/journal.pone.0091771
    • (2014) PloS One , vol.9
    • Gao, T.1    Han, Y.2    Yu, L.3    Ao, S.4    Li, Z.5    Ji, J.6
  • 23
    • 84908356032 scopus 로고    scopus 로고
    • CCNB1 is a prognostic biomarker for ER+ breast cancer
    • PMID:25044212
    • Ding K, Li W, Zou Z, Zou X, Wang C. CCNB1 is a prognostic biomarker for ER+ breast cancer. Med Hypotheses 2014; 83:359-64; PMID:25044212; http://dx.doi.org/10.1016/j.mehy.2014.06.013
    • (2014) Med Hypotheses , vol.83 , pp. 359-364
    • Ding, K.1    Li, W.2    Zou, Z.3    Zou, X.4    Wang, C.5
  • 25
    • 19944422061 scopus 로고    scopus 로고
    • A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer
    • PMID:15591335
    • Paik S, Shak S, Tang G, Kim C, Baker J, Cronin M, Baehner FL, Walker MG, Watson D, Park T, et al. A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer. New Engl J Med 2004; 351:2817-26; PMID:15591335; http://dx.doi.org/10.1056/NEJMoa041588
    • (2004) New Engl J Med , vol.351 , pp. 2817-2826
    • Paik, S.1    Shak, S.2    Tang, G.3    Kim, C.4    Baker, J.5    Cronin, M.6    Baehner, F.L.7    Walker, M.G.8    Watson, D.9    Park, T.10
  • 26
    • 84878751871 scopus 로고    scopus 로고
    • The impact of cyclin D1 overexpression on the prognosis of ER-positive breast cancers: A meta-analysis
    • PMID:23670132
    • Xu XL, Chen SZ, Chen W, Zheng WH, Xia XH, Yang HJ, Li B, Mao WM. The impact of cyclin D1 overexpression on the prognosis of ER-positive breast cancers: a meta-analysis. Breast Cancer Res Treat 2013; 139:329-39; PMID:23670132; http://dx.doi.org/10.1007/s10549-013-2563-5
    • (2013) Breast Cancer Res Treat , vol.139 , pp. 329-339
    • Xu, X.L.1    Chen, S.Z.2    Chen, W.3    Zheng, W.H.4    Xia, X.H.5    Yang, H.J.6    Li, B.7    Mao, W.M.8
  • 28
    • 38049090322 scopus 로고    scopus 로고
    • Maternal embryonic leucine zipper kinase is a key regulator of the proliferation of malignant brain tumors, including brain tumor stemcells
    • PMID:17722061
    • Nakano I, Masterman-Smith M, Saigusa K, Paucar AA, Horvath S, Shoemaker L, Watanabe M, Negro A, Bajpai R, Howes A, et al. Maternal embryonic leucine zipper kinase is a key regulator of the proliferation of malignant brain tumors, including brain tumor stemcells. J Neurosci Res 2008; 86:48-60; PMID:17722061; http://dx.doi.org/10.1002/jnr.21471
    • (2008) J Neurosci Res , vol.86 , pp. 48-60
    • Nakano, I.1    Masterman-Smith, M.2    Saigusa, K.3    Paucar, A.A.4    Horvath, S.5    Shoemaker, L.6    Watanabe, M.7    Negro, A.8    Bajpai, R.9    Howes, A.10
  • 30
    • 34248191375 scopus 로고    scopus 로고
    • Involvement of maternal embryonic leucine zipper kinase (MELK) in mammary carcinogenesis through interaction with Bcl-G, a pro-apoptotic member of the Bcl-2 family
    • PMID:17280616
    • Lin ML, Park JH, Nishidate T, Nakamura Y, Katagiri T. Involvement of maternal embryonic leucine zipper kinase (MELK) in mammary carcinogenesis through interaction with Bcl-G, a pro-apoptotic member of the Bcl-2 family. Breast Cancer Res 2007; 9:R17; PMID:17280616;
    • (2007) Breast Cancer Res , vol.9 , pp. R17
    • Lin, M.L.1    Park, J.H.2    Nishidate, T.3    Nakamura, Y.4    Katagiri, T.5
  • 31
    • 84875252574 scopus 로고    scopus 로고
    • Network-based approach identified cell cycle genes as predictor of overall survival in lung adenocarcinoma patients
    • PMID:23357462
    • Li Y, Tang H, Sun Z, Bungum AO, Edell ES, Lingle WL, Stoddard SM, Zhang M, Jen J, Yang P, et al. Network-based approach identified cell cycle genes as predictor of overall survival in lung adenocarcinoma patients. Lung Cancer 2013; 80:91-8; PMID:23357462; http://dx.doi.org/10.1016/j.lungcan.2012.12.022
    • (2013) Lung Cancer , vol.80 , pp. 91-98
    • Li, Y.1    Tang, H.2    Sun, Z.3    Bungum, A.O.4    Edell, E.S.5    Lingle, W.L.6    Stoddard, S.M.7    Zhang, M.8    Jen, J.9    Yang, P.10
  • 33
    • 84902089820 scopus 로고    scopus 로고
    • Integrating meta-analysis of microarray data and targeted proteomics for biomarker identification: Application in breast cancer
    • PMID:24799281
    • Pavlou MP, Dimitromanolakis A, Martinez-Morillo E, Smid M, Foekens JA, Diamandis EP. Integrating meta-analysis of microarray data and targeted proteomics for biomarker identification: application in breast cancer. J Proteome Res 2014; 13:2897-909; PMID:24799281; http://dx.doi.org/10.1021/pr500352e
    • (2014) J Proteome Res , vol.13 , pp. 2897-2909
    • Pavlou, M.P.1    Dimitromanolakis, A.2    Martinez-Morillo, E.3    Smid, M.4    Foekens, J.A.5    Diamandis, E.P.6
  • 34
    • 84892448216 scopus 로고    scopus 로고
    • Targeting cyclin-dependent kinase 1 (CDK1) but not CDK4/6 or CDK2 is selectively lethal to MYC-dependent human breast cancer cells
    • PMID:24444383
    • Kang J, Sergio CM, Sutherland RL, Musgrove EA. Targeting cyclin-dependent kinase 1 (CDK1) but not CDK4/6 or CDK2 is selectively lethal to MYC-dependent human breast cancer cells. BMC Cancer 2014; 14:1471-2407; PMID:24444383; http://dx.doi.org/10.1186/1471-2407-14-32
    • (2014) BMC Cancer , vol.14 , pp. 1471-2407
    • Kang, J.1    Sergio, C.M.2    Sutherland, R.L.3    Musgrove, E.A.4
  • 36
    • 84924595580 scopus 로고    scopus 로고
    • Pathway-centric integrative analysis identifies RRM2 as a prognostic marker in breast cancer associated with poor survival and tamoxifen resistance
    • PMID:25016594
    • Putluri N, Maity S, Kommangani R, Creighton CJ, Putluri V, Chen F, Nanda S, Bhowmik SK, Terunuma A, Dorsey T, et al. Pathway-centric integrative analysis identifies RRM2 as a prognostic marker in breast cancer associated with poor survival and tamoxifen resistance. Neoplasia 2014; 16:390-402; PMID:25016594; http://dx.doi.org/10.1016/j.neo.2014.05.007
    • (2014) Neoplasia , vol.16 , pp. 390-402
    • Putluri, N.1    Maity, S.2    Kommangani, R.3    Creighton, C.J.4    Putluri, V.5    Chen, F.6    Nanda, S.7    Bhowmik, S.K.8    Terunuma, A.9    Dorsey, T.10
  • 37
    • 34247145491 scopus 로고    scopus 로고
    • Definition of clinically distinct molecular subtypes in estrogen receptor-positive breast carcinomas through genomic grade
    • PMID:17401012
    • Loi S, Haibe-Kains B, Desmedt C, Lallemand F, Tutt AM, Gillet C, Ellis P, Harris A, Bergh J, Foekens JA, et al. Definition of clinically distinct molecular subtypes in estrogen receptor-positive breast carcinomas through genomic grade. J Clin Oncol 2007; 25: 1239-46; PMID:17401012; http://dx.doi.org/10.1200/JCO.2006.07.1522
    • (2007) J Clin Oncol , vol.25 , pp. 1239-1246
    • Loi, S.1    Haibe-Kains, B.2    Desmedt, C.3    Lallemand, F.4    Tutt, A.M.5    Gillet, C.6    Ellis, P.7    Harris, A.8    Bergh, J.9    Foekens, J.A.10
  • 38
    • 44949121510 scopus 로고    scopus 로고
    • Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen
    • PMID:18498629
    • Loi S, Haibe-Kains B, Desmedt C, Wirapati P, Lallemand F, Tutt AM, Gillet C, Ellis P, Ryder K, Reid JF, et al. Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen. BMC Genomics 2008; 9:1471-2164; PMID:18498629; http://dx.doi.org/10.1186/1471-2164-9-239
    • (2008) BMC Genomics , vol.9 , pp. 1471-2164
    • Loi, S.1    Haibe-Kains, B.2    Desmedt, C.3    Wirapati, P.4    Lallemand, F.5    Tutt, A.M.6    Gillet, C.7    Ellis, P.8    Ryder, K.9    Reid, J.F.10
  • 39
    • 26444546442 scopus 로고    scopus 로고
    • An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival
    • PMID:16141321
    • Miller LD, Smeds J, George J, Vega VB, Vergara L, Ploner A, Pawitan Y, Hall P, Klaar S, Liu ET, et al. An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival. Proc Natl Acad Sci U S A 2005; 102:13550-5; PMID:16141321; http://dx.doi.org/10.1073/pnas.0506230102
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 13550-13555
    • Miller, L.D.1    Smeds, J.2    George, J.3    Vega, V.B.4    Vergara, L.5    Ploner, A.6    Pawitan, Y.7    Hall, P.8    Klaar, S.9    Liu, E.T.10
  • 40
    • 33144462268 scopus 로고    scopus 로고
    • Gene expression profiling in breast cancer: Understanding the molecular basis of histologic grade to improve prognosis
    • PMID:16478745
    • Sotiriou C, Wirapati P, Loi S, Harris A, Fox S, Smeds J, Nordgren H, Farmer P, Praz V, Haibe-Kains B, et al. Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis. J Natl Cancer Inst 2006; 98:262-72; PMID:16478745; http://dx.doi.org/10.1093/jnci/djj052
    • (2006) J Natl Cancer Inst , vol.98 , pp. 262-272
    • Sotiriou, C.1    Wirapati, P.2    Loi, S.3    Harris, A.4    Fox, S.5    Smeds, J.6    Nordgren, H.7    Farmer, P.8    Praz, V.9    Haibe-Kains, B.10
  • 42
    • 79961116748 scopus 로고    scopus 로고
    • Strategies for aggregating gene expression data: The collapseRows R function
    • PMID:21816037
    • Miller J, Cai C, Langfelder P, Geschwind D, Kurian S, Salomon D, Horvath S. Strategies for aggregating gene expression data: the collapseRows R function. BMC Bioinformatics 2011; 12:322; PMID:21816037; http://dx.doi.org/10.1186/1471-2105-12-322
    • (2011) BMC Bioinformatics , vol.12 , pp. 322
    • Miller, J.1    Cai, C.2    Langfelder, P.3    Geschwind, D.4    Kurian, S.5    Salomon, D.6    Horvath, S.7
  • 43
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • PMID:16646834
    • Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol 2005; 4:Article17; PMID:16646834; http://dx.doi.org/10.2202/1544-6115.1128
    • (2005) Stat Appl Genet Mol Biol , vol.4
    • Zhang, B.1    Horvath, S.2
  • 44
    • 0038005018 scopus 로고    scopus 로고
    • DAVID: Database for Annotation, Visualization, and Integrated Discovery
    • PMID:12734009
    • Dennis G, Sherman B, Hosack D, Yang J, Gao W, Lane HC, Lempicki R. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 2003; 4:P3; PMID:12734009; http://dx.doi.org/10.1186/gb-2003-4-5-p3
    • (2003) Genome Biol , vol.4 , pp. P3
    • Dennis, G.1    Sherman, B.2    Hosack, D.3    Yang, J.4    Gao, W.5    Lane, H.C.6    Lempicki, R.7


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