-
1
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
The Gene Ontology Consortium
-
Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., et al. Gene ontology: tool for the unification of biology. Nat. Genet. 2000, 25:25-29. The Gene Ontology Consortium.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
2
-
-
28244478026
-
Atg19p ubiquitination and the cytoplasm to vacuole trafficking pathway in yeast
-
Baxter B.K., Abeliovich H., Zhang X., Stirling A.G., Burlingame A.L., Goldfarb D.S. Atg19p ubiquitination and the cytoplasm to vacuole trafficking pathway in yeast. J.Biol. Chem. 2005, 280:39067-39076.
-
(2005)
J.Biol. Chem.
, vol.280
, pp. 39067-39076
-
-
Baxter, B.K.1
Abeliovich, H.2
Zhang, X.3
Stirling, A.G.4
Burlingame, A.L.5
Goldfarb, D.S.6
-
3
-
-
84894326290
-
Mitochondrial ER contacts are crucial for mitophagy in yeast
-
Böckler S., Westermann B. Mitochondrial ER contacts are crucial for mitophagy in yeast. Dev. Cell 2014, 28:450-458.
-
(2014)
Dev. Cell
, vol.28
, pp. 450-458
-
-
Böckler, S.1
Westermann, B.2
-
4
-
-
0036862055
-
The yeast ubiquitin protease, Ubp3p, promotes protein stability
-
Brew C.T., Huffaker T.C. The yeast ubiquitin protease, Ubp3p, promotes protein stability. Genetics 2002, 162:1079-1089.
-
(2002)
Genetics
, vol.162
, pp. 1079-1089
-
-
Brew, C.T.1
Huffaker, T.C.2
-
5
-
-
0038387865
-
Ubp3 requires a cofactor, Bre5, to specifically de-ubiquitinate the COPII protein, Sec23
-
Cohen M., Stutz F., Belgareh N., Haguenauer-Tsapis R., Dargemont C. Ubp3 requires a cofactor, Bre5, to specifically de-ubiquitinate the COPII protein, Sec23. Nat. Cell Biol. 2003, 5:661-667.
-
(2003)
Nat. Cell Biol.
, vol.5
, pp. 661-667
-
-
Cohen, M.1
Stutz, F.2
Belgareh, N.3
Haguenauer-Tsapis, R.4
Dargemont, C.5
-
6
-
-
57749121573
-
Mitophagy in yeast occurs through a selective mechanism
-
Kanki T., Klionsky D.J. Mitophagy in yeast occurs through a selective mechanism. J.Biol. Chem. 2008, 283:32386-32393.
-
(2008)
J.Biol. Chem.
, vol.283
, pp. 32386-32393
-
-
Kanki, T.1
Klionsky, D.J.2
-
7
-
-
73949122199
-
A genomic screen for yeast mutants defective in selective mitochondria autophagy
-
Kanki T., Wang K., Baba M., Bartholomew C.R., Lynch-Day M.A., Du Z., Geng J., Mao K., Yang Z., Yen W.L., Klionsky D.J. A genomic screen for yeast mutants defective in selective mitochondria autophagy. Mol. Biol. Cell 2009, 20:4730-4738.
-
(2009)
Mol. Biol. Cell
, vol.20
, pp. 4730-4738
-
-
Kanki, T.1
Wang, K.2
Baba, M.3
Bartholomew, C.R.4
Lynch-Day, M.A.5
Du, Z.6
Geng, J.7
Mao, K.8
Yang, Z.9
Yen, W.L.10
Klionsky, D.J.11
-
8
-
-
67650264633
-
Atg32 is a mitochondrial protein that confers selectivity during mitophagy
-
Kanki T., Wang K., Cao Y., Baba M., Klionsky D.J. Atg32 is a mitochondrial protein that confers selectivity during mitophagy. Dev. Cell 2009, 17:98-109.
-
(2009)
Dev. Cell
, vol.17
, pp. 98-109
-
-
Kanki, T.1
Wang, K.2
Cao, Y.3
Baba, M.4
Klionsky, D.J.5
-
10
-
-
4644273585
-
Uth1p is involved in the autophagic degradation of mitochondria
-
Kissová I., Deffieu M., Manon S., Camougrand N. Uth1p is involved in the autophagic degradation of mitochondria. J.Biol. Chem. 2004, 279:39068-39074.
-
(2004)
J.Biol. Chem.
, vol.279
, pp. 39068-39074
-
-
Kissová, I.1
Deffieu, M.2
Manon, S.3
Camougrand, N.4
-
11
-
-
35448981935
-
Autophagy: from phenomenology to molecular understanding in less than a decade
-
Klionsky D.J. Autophagy: from phenomenology to molecular understanding in less than a decade. Nat. Rev. Mol. Cell Biol. 2007, 8:931-937.
-
(2007)
Nat. Rev. Mol. Cell Biol.
, vol.8
, pp. 931-937
-
-
Klionsky, D.J.1
-
12
-
-
84858988067
-
Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy
-
Kondo-Okamoto N., Noda N.N., Suzuki S.W., Nakatogawa H., Takahashi I., Matsunami M., Hashimoto A., Inagaki F., Ohsumi Y., Okamoto K. Autophagy-related protein 32 acts as autophagic degron and directly initiates mitophagy. J.Biol. Chem. 2012, 287:10631-10638.
-
(2012)
J.Biol. Chem.
, vol.287
, pp. 10631-10638
-
-
Kondo-Okamoto, N.1
Noda, N.N.2
Suzuki, S.W.3
Nakatogawa, H.4
Takahashi, I.5
Matsunami, M.6
Hashimoto, A.7
Inagaki, F.8
Ohsumi, Y.9
Okamoto, K.10
-
13
-
-
43049138051
-
Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease
-
Kraft C., Deplazes A., Sohrmann M., Peter M. Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease. Nat. Cell Biol. 2008, 10:602-610.
-
(2008)
Nat. Cell Biol.
, vol.10
, pp. 602-610
-
-
Kraft, C.1
Deplazes, A.2
Sohrmann, M.3
Peter, M.4
-
14
-
-
84887464921
-
Genome-wide RNAi screen identifies ATPase inhibitory factor 1 (ATPIF1) as essential for PARK2 recruitment and mitophagy
-
Lefebvre V., Du Q., Baird S., Ng A.C., Nascimento M., Campanella M., McBride H.M., Screaton R.A. Genome-wide RNAi screen identifies ATPase inhibitory factor 1 (ATPIF1) as essential for PARK2 recruitment and mitophagy. Autophagy 2013, 9:1770-1779.
-
(2013)
Autophagy
, vol.9
, pp. 1770-1779
-
-
Lefebvre, V.1
Du, Q.2
Baird, S.3
Ng, A.C.4
Nascimento, M.5
Campanella, M.6
McBride, H.M.7
Screaton, R.A.8
-
15
-
-
16844366524
-
Selective mitochondrial autophagy, or mitophagy, as atargeted defense against oxidative stress, mitochondrial dysfunction, and aging
-
Lemasters J.J. Selective mitochondrial autophagy, or mitophagy, as atargeted defense against oxidative stress, mitochondrial dysfunction, and aging. Rejuvenation Res. 2005, 8:3-5.
-
(2005)
Rejuvenation Res.
, vol.8
, pp. 3-5
-
-
Lemasters, J.J.1
-
16
-
-
84876528373
-
Ras protein/cAMP-dependent protein kinase signaling is negatively regulated by a deubiquitinating enzyme, Ubp3, in yeast
-
Li Y., Wang Y. Ras protein/cAMP-dependent protein kinase signaling is negatively regulated by a deubiquitinating enzyme, Ubp3, in yeast. J.Biol. Chem. 2013, 288:11358-11365.
-
(2013)
J.Biol. Chem.
, vol.288
, pp. 11358-11365
-
-
Li, Y.1
Wang, Y.2
-
17
-
-
23844450325
-
Structural basis for interaction between the Ubp3 deubiquitinating enzyme and its Bre5 cofactor
-
Li K., Zhao K., Ossareh-Nazari B., Da G., Dargemont C., Marmorstein R. Structural basis for interaction between the Ubp3 deubiquitinating enzyme and its Bre5 cofactor. J.Biol. Chem. 2005, 280:29176-29185.
-
(2005)
J.Biol. Chem.
, vol.280
, pp. 29176-29185
-
-
Li, K.1
Zhao, K.2
Ossareh-Nazari, B.3
Da, G.4
Dargemont, C.5
Marmorstein, R.6
-
18
-
-
77950510302
-
The Cvt pathway as a model for selective autophagy
-
Lynch-Day M.A., Klionsky D.J. The Cvt pathway as a model for selective autophagy. FEBS Lett. 2010, 584:1359-1366.
-
(2010)
FEBS Lett.
, vol.584
, pp. 1359-1366
-
-
Lynch-Day, M.A.1
Klionsky, D.J.2
-
19
-
-
77951181836
-
PINK1 stabilized by mitochondrial depolarization recruits Parkin to damaged mitochondria and activates latent Parkin for mitophagy
-
Matsuda N., Sato S., Shiba K., Okatsu K., Saisho K., Gautier C.A., Sou Y.S., Saiki S., Kawajiri S., Sato F., et al. PINK1 stabilized by mitochondrial depolarization recruits Parkin to damaged mitochondria and activates latent Parkin for mitophagy. J.Cell Biol. 2010, 189:211-221.
-
(2010)
J.Cell Biol.
, vol.189
, pp. 211-221
-
-
Matsuda, N.1
Sato, S.2
Shiba, K.3
Okatsu, K.4
Saisho, K.5
Gautier, C.A.6
Sou, Y.S.7
Saiki, S.8
Kawajiri, S.9
Sato, F.10
-
20
-
-
79953158981
-
Mitophagy in yeast is independent of mitochondrial fission and requires the stress response gene WHI2
-
Mendl N., Occhipinti A., Müller M., Wild P., Dikic I., Reichert A.S. Mitophagy in yeast is independent of mitochondrial fission and requires the stress response gene WHI2. J.Cell Sci. 2011, 124:1339-1350.
-
(2011)
J.Cell Sci.
, vol.124
, pp. 1339-1350
-
-
Mendl, N.1
Occhipinti, A.2
Müller, M.3
Wild, P.4
Dikic, I.5
Reichert, A.S.6
-
21
-
-
58149314211
-
Parkin is recruited selectively to impaired mitochondria and promotes their autophagy
-
Narendra D., Tanaka A., Suen D.F., Youle R.J. Parkin is recruited selectively to impaired mitochondria and promotes their autophagy. J.Cell Biol. 2008, 183:795-803.
-
(2008)
J.Cell Biol.
, vol.183
, pp. 795-803
-
-
Narendra, D.1
Tanaka, A.2
Suen, D.F.3
Youle, R.J.4
-
22
-
-
57249083972
-
Structural basis of target recognition by Atg8/LC3 during selective autophagy
-
Noda N.N., Kumeta H., Nakatogawa H., Satoo K., Adachi W., Ishii J., Fujioka Y., Ohsumi Y., Inagaki F. Structural basis of target recognition by Atg8/LC3 during selective autophagy. Genes Cells 2008, 13:1211-1218.
-
(2008)
Genes Cells
, vol.13
, pp. 1211-1218
-
-
Noda, N.N.1
Kumeta, H.2
Nakatogawa, H.3
Satoo, K.4
Adachi, W.5
Ishii, J.6
Fujioka, Y.7
Ohsumi, Y.8
Inagaki, F.9
-
23
-
-
74049153002
-
Nix is a selective autophagy receptor for mitochondrial clearance
-
Novak I., Kirkin V., McEwan D.G., Zhang J., Wild P., Rozenknop A., Rogov V., Löhr F., Popovic D., Occhipinti A., et al. Nix is a selective autophagy receptor for mitochondrial clearance. EMBO Rep. 2010, 11:45-51.
-
(2010)
EMBO Rep.
, vol.11
, pp. 45-51
-
-
Novak, I.1
Kirkin, V.2
McEwan, D.G.3
Zhang, J.4
Wild, P.5
Rozenknop, A.6
Rogov, V.7
Löhr, F.8
Popovic, D.9
Occhipinti, A.10
-
24
-
-
34250898919
-
Mdm38 protein depletion causes loss of mitochondrial K+/H+ exchange activity, osmotic swelling and mitophagy
-
Nowikovsky K., Reipert S., Devenish R.J., Schweyen R.J. Mdm38 protein depletion causes loss of mitochondrial K+/H+ exchange activity, osmotic swelling and mitophagy. Cell Death Differ. 2007, 14:1647-1656.
-
(2007)
Cell Death Differ.
, vol.14
, pp. 1647-1656
-
-
Nowikovsky, K.1
Reipert, S.2
Devenish, R.J.3
Schweyen, R.J.4
-
25
-
-
67650246357
-
Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy
-
Okamoto K., Kondo-Okamoto N., Ohsumi Y. Mitochondria-anchored receptor Atg32 mediates degradation of mitochondria via selective autophagy. Dev. Cell 2009, 17:87-97.
-
(2009)
Dev. Cell
, vol.17
, pp. 87-97
-
-
Okamoto, K.1
Kondo-Okamoto, N.2
Ohsumi, Y.3
-
26
-
-
82555187810
-
Image-based genome-wide siRNA screen identifies selective autophagy factors
-
Orvedahl A., Sumpter R., Xiao G., Ng A., Zou Z., Tang Y., Narimatsu M., Gilpin C., Sun Q., Roth M., et al. Image-based genome-wide siRNA screen identifies selective autophagy factors. Nature 2011, 480:113-117.
-
(2011)
Nature
, vol.480
, pp. 113-117
-
-
Orvedahl, A.1
Sumpter, R.2
Xiao, G.3
Ng, A.4
Zou, Z.5
Tang, Y.6
Narimatsu, M.7
Gilpin, C.8
Sun, Q.9
Roth, M.10
-
27
-
-
27944482199
-
Impairing the bioenergetic status and the biogenesis of mitochondria triggers mitophagy in yeast
-
Priault M., Salin B., Schaeffer J., Vallette F.M., di Rago J.P., Martinou J.C. Impairing the bioenergetic status and the biogenesis of mitochondria triggers mitophagy in yeast. Cell Death Differ. 2005, 12:1613-1621.
-
(2005)
Cell Death Differ.
, vol.12
, pp. 1613-1621
-
-
Priault, M.1
Salin, B.2
Schaeffer, J.3
Vallette, F.M.4
di Rago, J.P.5
Martinou, J.C.6
-
28
-
-
47049100413
-
Essential role for Nix in autophagic maturation of erythroid cells
-
Sandoval H., Thiagarajan P., Dasgupta S.K., Schumacher A., Prchal J.T., Chen M., Wang J. Essential role for Nix in autophagic maturation of erythroid cells. Nature 2008, 454:232-235.
-
(2008)
Nature
, vol.454
, pp. 232-235
-
-
Sandoval, H.1
Thiagarajan, P.2
Dasgupta, S.K.3
Schumacher, A.4
Prchal, J.T.5
Chen, M.6
Wang, J.7
-
29
-
-
80155192462
-
Control of Ubp3 ubiquitin protease activity by the Hog1 SAPK modulates transcription upon osmostress
-
Solé C., Nadal-Ribelles M., Kraft C., Peter M., Posas F., de Nadal E. Control of Ubp3 ubiquitin protease activity by the Hog1 SAPK modulates transcription upon osmostress. EMBO J. 2011, 30:3274-3284.
-
(2011)
EMBO J.
, vol.30
, pp. 3274-3284
-
-
Solé, C.1
Nadal-Ribelles, M.2
Kraft, C.3
Peter, M.4
Posas, F.5
de Nadal, E.6
-
30
-
-
84871002139
-
Selective autophagy in budding yeast
-
Suzuki K. Selective autophagy in budding yeast. Cell Death Differ. 2013, 20:43-48.
-
(2013)
Cell Death Differ.
, vol.20
, pp. 43-48
-
-
Suzuki, K.1
-
32
-
-
0035861532
-
Systematic genetic analysis with ordered arrays of yeast deletion mutants
-
Tong A.H., Evangelista M., Parsons A.B., Xu H., Bader G.D., Pagé N., Robinson M., Raghibizadeh S., Hogue C.W., Bussey H., et al. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science 2001, 294:2364-2368.
-
(2001)
Science
, vol.294
, pp. 2364-2368
-
-
Tong, A.H.1
Evangelista, M.2
Parsons, A.B.3
Xu, H.4
Bader, G.D.5
Pagé, N.6
Robinson, M.7
Raghibizadeh, S.8
Hogue, C.W.9
Bussey, H.10
-
33
-
-
75949098487
-
PINK1-dependent recruitment of Parkin to mitochondria in mitophagy
-
Vives-Bauza C., Zhou C., Huang Y., Cui M., de Vries R.L., Kim J., May J., Tocilescu M.A., Liu W., Ko H.S., et al. PINK1-dependent recruitment of Parkin to mitochondria in mitophagy. Proc. Natl. Acad. Sci. USA 2010, 107:378-383.
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 378-383
-
-
Vives-Bauza, C.1
Zhou, C.2
Huang, Y.3
Cui, M.4
de Vries, R.L.5
Kim, J.6
May, J.7
Tocilescu, M.A.8
Liu, W.9
Ko, H.S.10
-
34
-
-
23844558266
-
A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine
-
Wallace D.C. A mitochondrial paradigm of metabolic and degenerative diseases, aging, and cancer: a dawn for evolutionary medicine. Annu. Rev. Genet. 2005, 39:359-407.
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 359-407
-
-
Wallace, D.C.1
|