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Volumn 16, Issue 1, 2015, Pages

Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation

Author keywords

Cell differentiation; Evolution; Gene expression; Multicellular development; Signaling cascade

Indexed keywords

ABC TRANSPORTER; POLYKETIDE SYNTHASE; SERINE PROTEINASE; TRANSCRIPTOME;

EID: 84924339383     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/s12864-015-1278-x     Document Type: Article
Times cited : (19)

References (49)
  • 1
    • 0037180799 scopus 로고    scopus 로고
    • Multicellularity: evolution and the egg
    • Wolpert L, Szathmary E. Multicellularity: evolution and the egg. Nature. 2002;420:745.
    • (2002) Nature , vol.420 , pp. 745
    • Wolpert, L.1    Szathmary, E.2
  • 2
    • 0037872679 scopus 로고    scopus 로고
    • Evolution of development in the cellular slime molds
    • Bonner JT. Evolution of development in the cellular slime molds. Evol Devel. 2003;5:305-13.
    • (2003) Evol Devel , vol.5 , pp. 305-313
    • Bonner, J.T.1
  • 3
    • 0003836640 scopus 로고    scopus 로고
    • Dictyostelium - Evolution, Cell Biology, and the Development of Multicellularity.
    • Cambridge, UK: Cambridge Univ. Press
    • Kessin RH. Dictyostelium - Evolution, Cell Biology, and the Development of Multicellularity. Cambridge, UK: Cambridge Univ. Press; 2001.
    • (2001)
    • Kessin, R.H.1
  • 4
    • 78751519240 scopus 로고    scopus 로고
    • Evolutionary crossroads in developmental biology: Dictyostelium discoideum
    • Schaap P. Evolutionary crossroads in developmental biology: Dictyostelium discoideum. Development. 2011;138:387-96.
    • (2011) Development , vol.138 , pp. 387-396
    • Schaap, P.1
  • 5
  • 6
    • 84874233174 scopus 로고    scopus 로고
    • Temporal and non-permanent division of labor during sorocarp formation in the social amoeba Acytostelium subglobosum
    • Mohri K, Kiyota Y, Kuwayama H, Urushihara H. Temporal and non-permanent division of labor during sorocarp formation in the social amoeba Acytostelium subglobosum. Dev Biol. 2013;375:202-9.
    • (2013) Dev Biol , vol.375 , pp. 202-209
    • Mohri, K.1    Kiyota, Y.2    Kuwayama, H.3    Urushihara, H.4
  • 9
    • 0036865086 scopus 로고    scopus 로고
    • Taxonomy, slime molds, and the questions we ask
    • Swanson AR, Spiegel FW, Cavender JC. Taxonomy, slime molds, and the questions we ask. Mycologia. 2002;94:968-79.
    • (2002) Mycologia , vol.94 , pp. 968-979
    • Swanson, A.R.1    Spiegel, F.W.2    Cavender, J.C.3
  • 14
    • 84924321094 scopus 로고    scopus 로고
    • Stand-alone tRNAscan-SE. [ http://selab.janelia.org/software/ ]
  • 15
    • 0031915298 scopus 로고    scopus 로고
    • Relationship between "proto-splice sites" and intron phases: Evidence from dicodon analysis
    • Long M, deSouza SJ, Rosenberg C, Gilbert W. Relationship between "proto-splice sites" and intron phases: Evidence from dicodon analysis. Proc Natl Acad Sci U S A. 1998;95:219223.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 219223
    • Long, M.1    deSouza, S.J.2    Rosenberg, C.3    Gilbert, W.4
  • 16
    • 33644787447 scopus 로고    scopus 로고
    • OrthoMCL-DB querying a comprehensive multi-species collection of ortholog groups
    • Chen F, Mackey AJ, Stoeckert CJ, Roos DS. OrthoMCL-DB querying a comprehensive multi-species collection of ortholog groups. Nucl Acids Res. 2006;34:D363-8.
    • (2006) Nucl Acids Res , vol.34 , pp. D363-D368
    • Chen, F.1    Mackey, A.J.2    Stoeckert, C.J.3    Roos, D.S.4
  • 17
    • 84924321093 scopus 로고    scopus 로고
    • OrthoMCL. [ http://orthomcl.org/orthomcl/ ]
  • 19
    • 36549060587 scopus 로고    scopus 로고
    • Versatility of polyketide synthases in generating metabolic diversity
    • Gokhale RS, Sankaranarayanan R, Mohanty D. Versatility of polyketide synthases in generating metabolic diversity. Curr Opin Struct Biol. 2007;17:736-43.
    • (2007) Curr Opin Struct Biol , vol.17 , pp. 736-743
    • Gokhale, R.S.1    Sankaranarayanan, R.2    Mohanty, D.3
  • 20
    • 33747598945 scopus 로고    scopus 로고
    • Biosynthesis of Dictyostelium discoideum differentiation-inducing factor by a hybrid type I fatty acid-type III polyketide synthase
    • Austin MB, Saito T, Bowman ME, Haydock S, Kato A, Moore BS, et al. Biosynthesis of Dictyostelium discoideum differentiation-inducing factor by a hybrid type I fatty acid-type III polyketide synthase. Nat Chem Biol. 2006;2:494-502.
    • (2006) Nat Chem Biol , vol.2 , pp. 494-502
    • Austin, M.B.1    Saito, T.2    Bowman, M.E.3    Haydock, S.4    Kato, A.5    Moore, B.S.6    Kay, R.R.7    Noel, J.P.8
  • 21
    • 0034517148 scopus 로고    scopus 로고
    • The role of DIF-1 signaling in Dictyostelium development
    • Thompson CRL, Kay RR. The role of DIF-1 signaling in Dictyostelium development. Mol Cell. 2000;6:1509-14.
    • (2000) Mol Cell , vol.6 , pp. 1509-1514
    • Thompson, C.R.L.1    Kay, R.R.2
  • 22
    • 43049095188 scopus 로고    scopus 로고
    • DIF-1 induces the basal disc of the Dictyostelium fruiting body
    • Saito T, Kato A, Kay RR. DIF-1 induces the basal disc of the Dictyostelium fruiting body. Dev Biol. 2008;317:444-53.
    • (2008) Dev Biol , vol.317 , pp. 444-453
    • Saito, T.1    Kato, A.2    Kay, R.R.3
  • 23
    • 79960134502 scopus 로고    scopus 로고
    • The polyketide MPBD initiates the SDF-1 signaling cascade that coordinates terminal differentiation in Dictyostelium
    • Anjard C, Su Y, Loomis WF. The polyketide MPBD initiates the SDF-1 signaling cascade that coordinates terminal differentiation in Dictyostelium. Eukaryot Cell. 2011;10:956-63.
    • (2011) Eukaryot Cell , vol.10 , pp. 956-963
    • Anjard, C.1    Su, Y.2    Loomis, W.F.3
  • 24
    • 79955021078 scopus 로고    scopus 로고
    • Dictyostelium hybrid polyketide synthase, SteelyA, produces 4-methyl-5-pentylbenzene-1,3-diol and induces spore maturation
    • Narita TB, Koide K, Morita N, Saito T. Dictyostelium hybrid polyketide synthase, SteelyA, produces 4-methyl-5-pentylbenzene-1,3-diol and induces spore maturation. FEMS Microbiol Lett. 2011;319:82-7.
    • (2011) FEMS Microbiol Lett , vol.319 , pp. 82-87
    • Narita, T.B.1    Koide, K.2    Morita, N.3    Saito, T.4
  • 25
    • 0028332210 scopus 로고
    • Disruption of the gene encoding the EcmA, extracellular matrix protein of Dictyostelium alters slug morphology
    • Morrison A, Blanton RL, Grimson M, Fuchs M, Williams K, Williams J. Disruption of the gene encoding the EcmA, extracellular matrix protein of Dictyostelium alters slug morphology. Dev Biol. 1994;163:457-66.
    • (1994) Dev Biol , vol.163 , pp. 457-466
    • Morrison, A.1    Blanton, R.L.2    Grimson, M.3    Fuchs, M.4    Williams, K.5    Williams, J.6
  • 26
    • 0038444692 scopus 로고    scopus 로고
    • TagA, a putative serine protease/ABC transporter of Dictyostelium that is required for cell fate determination at the onset of development
    • Good JR, Cabral M, Sharma S, Yang J, Van Driessche N, Shaw CA, et al. TagA, a putative serine protease/ABC transporter of Dictyostelium that is required for cell fate determination at the onset of development. Development. 2003;130:2953-65.
    • (2003) Development , vol.130 , pp. 2953-2965
    • Good, J.R.1    Cabral, M.2    Sharma, S.3    Yang, J.4    Van Driessche, N.5    Shaw, C.A.6    Shaulsky, G.7    Kuspa, A.8
  • 28
    • 0029770437 scopus 로고    scopus 로고
    • Characterization of the Saccharomyces cerevisiae RTA1 gene involved in 7-aminocholesterol resistance
    • Soustre I, Letourneux Y, Karst F. Characterization of the Saccharomyces cerevisiae RTA1 gene involved in 7-aminocholesterol resistance. Curr Genet. 1996;30:121-5.
    • (1996) Curr Genet , vol.30 , pp. 121-125
    • Soustre, I.1    Letourneux, Y.2    Karst, F.3
  • 31
    • 79956139627 scopus 로고    scopus 로고
    • Control of prestalk-cell differentiation by transcription factors
    • Fukuzawa M. Control of prestalk-cell differentiation by transcription factors. Dev Growth Differ. 2011;53:538-47.
    • (2011) Dev Growth Differ , vol.53 , pp. 538-547
    • Fukuzawa, M.1
  • 32
    • 0031950916 scopus 로고    scopus 로고
    • The homeobox-containing gene Wariai regulates anterior-posterior patterning and cell-type homeostasis in Dictyostelium
    • Han Z, Firtel RA. The homeobox-containing gene Wariai regulates anterior-posterior patterning and cell-type homeostasis in Dictyostelium. Development. 1998;125:313-25.
    • (1998) Development , vol.125 , pp. 313-325
    • Han, Z.1    Firtel, R.A.2
  • 34
    • 60349109770 scopus 로고    scopus 로고
    • Role of an expansin-like molecule in Dictyostelium morphogenesis and regulation of its gene expression by the signal transducer and activator of transcription protein Dd-STATa
    • Ogasawara S, Shimada N, Kawata T. Role of an expansin-like molecule in Dictyostelium morphogenesis and regulation of its gene expression by the signal transducer and activator of transcription protein Dd-STATa. Dev Growth Differ. 2009;51:109-22.
    • (2009) Dev Growth Differ , vol.51 , pp. 109-122
    • Ogasawara, S.1    Shimada, N.2    Kawata, T.3
  • 35
    • 39749162982 scopus 로고    scopus 로고
    • High-throughput analysis of spatio-temporal dynamics in Dictyostelium
    • Sawai S, Guan XJ, Kuspa A, Cox EC. High-throughput analysis of spatio-temporal dynamics in Dictyostelium. Genome Biol. 2008;8:R144.
    • (2008) Genome Biol , vol.8 , pp. R144
    • Sawai, S.1    Guan, X.J.2    Kuspa, A.3    Cox, E.C.4
  • 36
    • 77957357824 scopus 로고    scopus 로고
    • Two different genomes that produce the same result
    • Kessin RH. Two different genomes that produce the same result. Genome Biol. 2010;11:114.
    • (2010) Genome Biol , vol.11 , pp. 114
    • Kessin, R.H.1
  • 37
    • 33845651401 scopus 로고    scopus 로고
    • Genetic evidence that the acyl coenzyme A binding protein AcbA and the serine protease/ABC transporter TagA function together in Dictyostelium discoideum cell differentiation
    • Cabral M, Anjard C, Loomis WF, Kuspa A. Genetic evidence that the acyl coenzyme A binding protein AcbA and the serine protease/ABC transporter TagA function together in Dictyostelium discoideum cell differentiation. Eukaryot Cell. 2006;5:2024-32.
    • (2006) Eukaryot Cell , vol.5 , pp. 2024-2032
    • Cabral, M.1    Anjard, C.2    Loomis, W.F.3    Kuspa, A.4
  • 38
    • 84979073708 scopus 로고    scopus 로고
    • Defects in the synthetic pathway prevent DIF-1 mediated stalk lineage specification cascade in the non-differentiating social amoeba, Acytostelium subglobosum
    • Mohri K, Hata T, Kikuchi H, Oshima Y, Urushihara H. Defects in the synthetic pathway prevent DIF-1 mediated stalk lineage specification cascade in the non-differentiating social amoeba, Acytostelium subglobosum. Biology Open. 2014;3:553-60.
    • (2014) Biology Open , vol.3 , pp. 553-560
    • Mohri, K.1    Hata, T.2    Kikuchi, H.3    Oshima, Y.4    Urushihara, H.5
  • 39
    • 0031736094 scopus 로고    scopus 로고
    • Production and activity of spore differentiation factors (SDFs) in Dictyostelium
    • Anjard C, Chang WT, Gross J, Nellen W. Production and activity of spore differentiation factors (SDFs) in Dictyostelium. Development. 1998;125:4067-75.
    • (1998) Development , vol.125 , pp. 4067-4075
    • Anjard, C.1    Chang, W.T.2    Gross, J.3    Nellen, W.4
  • 40
    • 77956791062 scopus 로고    scopus 로고
    • Unconventional secretion of AcbA in Dictyostelium discoideum through a vesicular intermediate
    • Cabral M, Anjard C, Malhotra V, Loomis WF, Kuspa A. Unconventional secretion of AcbA in Dictyostelium discoideum through a vesicular intermediate. Eukaryot Cell. 2010;9:1009-17.
    • (2010) Eukaryot Cell , vol.9 , pp. 1009-1017
    • Cabral, M.1    Anjard, C.2    Malhotra, V.3    Loomis, W.F.4    Kuspa, A.5
  • 41
    • 65549116544 scopus 로고    scopus 로고
    • Steroids initiate a signaling cascade that triggers rapid sporulation in Dictyostelium
    • Anjard C, Su Y, Loomis WF. Steroids initiate a signaling cascade that triggers rapid sporulation in Dictyostelium. Development. 2009;136:803-12.
    • (2009) Development , vol.136 , pp. 803-812
    • Anjard, C.1    Su, Y.2    Loomis, W.F.3
  • 42
    • 0344258433 scopus 로고    scopus 로고
    • SDF-2 induction of terminal differentiation in Dictyostelium discoideum is mediated by the membrane-spanning sensor kinase DhkA
    • Wang N, Soderbom F, Anjard C, Shaulsky G, Loomis WF. SDF-2 induction of terminal differentiation in Dictyostelium discoideum is mediated by the membrane-spanning sensor kinase DhkA. Mol Cell Biol. 1999;19:4750-6.
    • (1999) Mol Cell Biol , vol.19 , pp. 4750-4756
    • Wang, N.1    Soderbom, F.2    Anjard, C.3    Shaulsky, G.4    Loomis, W.F.5
  • 46
    • 24044447664 scopus 로고    scopus 로고
    • Automated generation of heuristics for biological sequence comparison
    • Slater GS, Birney E. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics. 2005;6:31.
    • (2005) BMC Bioinformatics , vol.6 , pp. 31
    • Slater, G.S.1    Birney, E.2
  • 47
    • 84877130382 scopus 로고    scopus 로고
    • One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012
    • Fey P, Dodson RJ, Basu S, Chisholm RL. One stop shop for everything Dictyostelium: dictyBase and the Dicty Stock Center in 2012. Methods Mol Biol. 2013;983:59-92.
    • (2013) Methods Mol Biol , vol.983 , pp. 59-92
    • Fey, P.1    Dodson, R.J.2    Basu, S.3    Chisholm, R.L.4
  • 48
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: identification of ortholog groups for eukaryotic genomes
    • Li L, Stoeckert Jr CJ, Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 2003;13:2178-89.
    • (2003) Genome Res , vol.13 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3


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