메뉴 건너뛰기




Volumn 23, Issue 19, 2007, Pages 2543-2549

Polyketide synthase genes and the natural products potential of Dictyostelium discoideum

Author keywords

[No Author keywords available]

Indexed keywords

POLYKETIDE SYNTHASE; STRUCTURAL PROTEIN;

EID: 35748967860     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm381     Document Type: Article
Times cited : (39)

References (31)
  • 1
    • 1642497589 scopus 로고    scopus 로고
    • Differentiation-inducing factor-1-induced growth arrest of K562 leukemia cells involves the reduction of ERK1/2 activity
    • Akaishi,E. et al. (2004) Differentiation-inducing factor-1-induced growth arrest of K562 leukemia cells involves the reduction of ERK1/2 activity. Eur. J. Pharmacol., 485, 21-29.
    • (2004) Eur. J. Pharmacol , vol.485 , pp. 21-29
    • Akaishi, E.1
  • 2
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Altschul,S.F. et al. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
    • (1990) J. Mol. Biol , vol.215 , pp. 403-410
    • Altschul, S.F.1
  • 3
    • 3442896886 scopus 로고    scopus 로고
    • NRPS-PKS: A knowledge-based resource for analysis of NRPS/PKS megasynthases
    • Ansari,M.Z. et al. (2004) NRPS-PKS: A knowledge-based resource for analysis of NRPS/PKS megasynthases. Nucleic Acids Res., 32, 405-413
    • (2004) Nucleic Acids Res , vol.32 , pp. 405-413
    • Ansari, M.Z.1
  • 4
    • 33747598945 scopus 로고    scopus 로고
    • Biosynthesis of Dietyostelium discoideum differentiation inducing factor by a hybrid type I fatty acid-type III polyketide synthase
    • Austin,M. B. et al. (2006) Biosynthesis of Dietyostelium discoideum differentiation inducing factor by a hybrid type I fatty acid-type III polyketide synthase. Nat. Chem. Biol., 2, 494-502.
    • (2006) Nat. Chem. Biol , vol.2 , pp. 494-502
    • Austin, M.B.1
  • 5
    • 0028685490 scopus 로고
    • Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey,T.L. and Elkan,C. (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol., 2, 28-36.
    • (1994) Proc. Int. Conf. Intell. Syst. Mol. Biol , vol.2 , pp. 28-36
    • Bailey, T.L.1    Elkan, C.2
  • 6
    • 0011542799 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Pateman,A. et al. (2002) The Pfam protein families database. Nucleic Acids Res., 30, 276-280.
    • (2002) Nucleic Acids Res , vol.30 , pp. 276-280
    • Pateman, A.1
  • 7
    • 33644874168 scopus 로고    scopus 로고
    • dietyBase, the model organism database for Dictyostelium discoideum
    • Chisholm,R.L. et al. (2006) dietyBase, the model organism database for Dictyostelium discoideum. Nucleic Acids Res., 34, D423-D427.
    • (2006) Nucleic Acids Res , vol.34
    • Chisholm, R.L.1
  • 8
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • Eddy,S.R. (1998) Profile hidden Markov models. Bioinformatics, 14, 755-763.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 9
    • 18344395923 scopus 로고    scopus 로고
    • The genome of the social amoeba Dictyostelium discoideum
    • Eichinger,L. et al. (2005) The genome of the social amoeba Dictyostelium discoideum. Nature, 435, 43-57.
    • (2005) Nature , vol.435 , pp. 43-57
    • Eichinger, L.1
  • 10
    • 0028841535 scopus 로고
    • Divergent sequence motifs correlated with the substrate specificity of (methyl)malonyl-CoA:aCyl carrier protein transacylase domains in modular poiyketide synthases
    • Haydock,S.F. et al. (1995) Divergent sequence motifs correlated with the substrate specificity of (methyl)malonyl-CoA:aCyl carrier protein transacylase domains in modular poiyketide synthases. FEBS Lett., 374, 246-248.
    • (1995) FEBS Lett , vol.374 , pp. 246-248
    • Haydock, S.F.1
  • 11
    • 21244462769 scopus 로고    scopus 로고
    • Plasticity of the Streptomyces genome-evolution and engineering of new antibiotics
    • Hranueli,D. et al. (2005) Plasticity of the Streptomyces genome-evolution and engineering of new antibiotics. Curr. Med. Chem. 12, 1697-1704.
    • (2005) Curr. Med. Chem , vol.12 , pp. 1697-1704
    • Hranueli, D.1
  • 12
    • 0034628901 scopus 로고    scopus 로고
    • Computational identification of cis regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
    • Hughes,J.D. et al. (2000) Computational identification of cis regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol., 296, 1205-1214.
    • (2000) J. Mol. Biol , vol.296 , pp. 1205-1214
    • Hughes, J.D.1
  • 13
    • 33244467889 scopus 로고    scopus 로고
    • bZIP transcription factor interactions regulate DIF responses in Dictyostelium
    • Huang,E et al. (2006) bZIP transcription factor interactions regulate DIF responses in Dictyostelium. Development, 133, 449-458.
    • (2006) Development , vol.133 , pp. 449-458
    • Huang, E.1
  • 14
    • 24744433982 scopus 로고    scopus 로고
    • Evolutionary implications of bacterial polyketide synthases
    • Jenke-Kodama,H. et al. (2005) Evolutionary implications of bacterial polyketide synthases. Mol. Biol. Evol., 22, 2027-2039.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 2027-2039
    • Jenke-Kodama, H.1
  • 16
    • 34547930907 scopus 로고    scopus 로고
    • Structure and mechanism of the 6-deoxyerythronolide B synthase
    • Khosla,C. et al. (2007) Structure and mechanism of the 6-deoxyerythronolide B synthase. Annu. Rev. Biochem., 76, 195-221.
    • (2007) Annu. Rev. Biochem , vol.76 , pp. 195-221
    • Khosla, C.1
  • 17
    • 12244261592 scopus 로고    scopus 로고
    • DIF-1, an anti-tumor substance found in Dictyostelium discoideum, inhibits progesterone-induced oocyte maturation in Xenopus laevis
    • Kubohara,Y. et al. (2003) DIF-1, an anti-tumor substance found in Dictyostelium discoideum, inhibits progesterone-induced oocyte maturation in Xenopus laevis. Eur. J. Pharmacol., 460, 93-98.
    • (2003) Eur. J. Pharmacol , vol.460 , pp. 93-98
    • Kubohara, Y.1
  • 18
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar,S. et al. (2004) MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinformatics, 5, 150-163.
    • (2004) Brief. Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1
  • 19
    • 33749260145 scopus 로고    scopus 로고
    • Genetics of Streptomyces rimosus, the oxytetracycline producer
    • Petkovic,H. et al. (2006) Genetics of Streptomyces rimosus, the oxytetracycline producer. Microbiol. Mol. Biol. Rev., 70 704-728.
    • (2006) Microbiol. Mol. Biol. Rev , vol.70 , pp. 704-728
    • Petkovic, H.1
  • 20
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: The European Molecular Biology Open Software Suite
    • Rice,P. et al. (2000) EMBOSS: The European Molecular Biology Open Software Suite. Trends Genet., 16, 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1
  • 21
    • 0031787969 scopus 로고    scopus 로고
    • Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
    • Roth,F.P. et al. (1998) Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation. Nat. Biotechnol., 16, 939-945.
    • (1998) Nat. Biotechnol , vol.16 , pp. 939-945
    • Roth, F.P.1
  • 22
    • 0033635022 scopus 로고    scopus 로고
    • Artermis: Sequence visualisation and annotation
    • Rutherford,K. et al. (2000) Artermis: Sequence visualisation and annotation. Bioinformatics, 16, 944-945.
    • (2000) Bioinformatics , vol.16 , pp. 944-945
    • Rutherford, K.1
  • 23
    • 0025008168 scopus 로고
    • Sequence logos: A new way to display consensus sequences
    • Schneider,T.D. and Stephens,R.M. (1990) Sequence logos: A new way to display consensus sequences. Nucleic Acids Res., 18, 6097-6100.
    • (1990) Nucleic Acids Res , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 24
    • 33745969462 scopus 로고    scopus 로고
    • Advances in cloning, functional analysis and heterologous expression of fungal polyketide synthase genes
    • Schumann,J. and Hertweck,C. (2006) Advances in cloning, functional analysis and heterologous expression of fungal polyketide synthase genes. J. Biotechnol., 124, 690-703.
    • (2006) J. Biotechnol , vol.124 , pp. 690-703
    • Schumann, J.1    Hertweck, C.2
  • 25
    • 4544275674 scopus 로고    scopus 로고
    • Microbial Type 1 fatty acid synthases (FAS): Major players in a network of cellular FAS systems
    • Schweizer,E. and Hofmann, J. (2004) Microbial Type 1 fatty acid synthases (FAS): Major players in a network of cellular FAS systems. Microbiol. Mol. Biol. Rev., 68, 501-517.
    • (2004) Microbiol. Mol. Biol. Rev , vol.68 , pp. 501-517
    • Schweizer, E.1    Hofmann, J.2
  • 26
    • 0029017037 scopus 로고
    • Mitochondrial DNA replication but no nuclear DNA replication during development of Dictyostelium
    • Shaulsky,G. and Loomis,W.F. (1995) Mitochondrial DNA replication but no nuclear DNA replication during development of Dictyostelium. Proc. Natl Acad. Sci. USA, 92, 5660-5663.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 5660-5663
    • Shaulsky, G.1    Loomis, W.F.2
  • 27
    • 33747191139 scopus 로고    scopus 로고
    • Myxovirescin A biosynthesis is directed by hybrid polyketide.synthases/nonribosomal peptide synthetase, 3-hydroxy-3-methyl-glutryl-CoA synthases and trans-acting acyltransferases
    • Simunovic,V. et al. (2006) Myxovirescin A biosynthesis is directed by hybrid polyketide.synthases/nonribosomal peptide synthetase, 3-hydroxy-3-methyl-glutryl-CoA synthases and trans-acting acyltransferases. Chem. Biochem., 7, 1206-1220.
    • (2006) Chem. Biochem , vol.7 , pp. 1206-1220
    • Simunovic, V.1
  • 28
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson,J.D. et al. (1994) CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1
  • 29
    • 18144425479 scopus 로고    scopus 로고
    • Epistasis, analysis with global transcriptional phenotypes
    • Van Driessche,N. et al. (2005) Epistasis, analysis with global transcriptional phenotypes. Nat. Genet., 37, 471-477.
    • (2005) Nat. Genet , vol.37 , pp. 471-477
    • Van Driessche, N.1
  • 30
    • 30544434619 scopus 로고    scopus 로고
    • Combinatorial biosynthesis of reduced polyketides
    • Weissman,K.J. and Leadlay,P.F. (2005) Combinatorial biosynthesis of reduced polyketides. Nat. Rev. Microbial., 3, 925-936.
    • (2005) Nat. Rev. Microbial , vol.3 , pp. 925-936
    • Weissman, K.J.1    Leadlay, P.F.2
  • 31
    • 0029960055 scopus 로고    scopus 로고
    • TRANSFAC: A database on transcription factors and their DNA binding sites
    • Wingender,E. et al. (1996) TRANSFAC: A database on transcription factors and their DNA binding sites. Nucleic Acids Res., 24, 238-241.
    • (1996) Nucleic Acids Res , vol.24 , pp. 238-241
    • Wingender, E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.