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Volumn 122, Issue 3, 2015, Pages 537-550

Using next-generation RNA sequencing to examine ischemic changes induced by cold blood cardioplegia on the human left ventricular myocardium transcriptome

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATE BINDING PROTEIN; COMPLEMENT; CYTOKINE; REACTIVE OXYGEN METABOLITE; TRANSCRIPTION FACTOR; TRANSCRIPTOME;

EID: 84924336817     PISSN: 00033022     EISSN: 15281175     Source Type: Journal    
DOI: 10.1097/ALN.0000000000000582     Document Type: Article
Times cited : (27)

References (42)
  • 3
    • 24644444754 scopus 로고    scopus 로고
    • Molecular indices of apoptosis after intermittent blood and crystalloid cardioplegia
    • Feng J, Bianchi C, Sandmeyer JL, Li J, Sellke FW: Molecular indices of apoptosis after intermittent blood and crystalloid cardioplegia. Circulation 2005; 112(9 suppl):I184-9
    • (2005) Circulation , vol.112 , Issue.9 , pp. I184-I189
    • Feng, J.1    Bianchi, C.2    Sandmeyer, J.L.3    Li, J.4    Sellke, F.W.5
  • 7
    • 84872016138 scopus 로고    scopus 로고
    • History and use of del Nido cardioplegia solution at Boston Children's Hospital
    • Matte GS, del Nido PJ: History and use of del Nido cardioplegia solution at Boston Children's Hospital. J Extra Corpor Technol 2012; 44:98-103
    • (2012) J Extra Corpor Technol , vol.44 , pp. 98-103
    • Matte, G.S.1    Del Nido, P.J.2
  • 8
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL: TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 2009; 25:1105-11
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 10
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009; 10:R25
    • (2009) Genome Biol , vol.10 , pp. R25
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 11
    • 33745156134 scopus 로고    scopus 로고
    • An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs
    • Xing Y, Yu T, Wu YN, Roy M, Kim J, Lee C: An expectation-maximization algorithm for probabilistic reconstructions of full-length isoforms from splice graphs. Nucleic Acids Res 2006; 34:3150-60
    • (2006) Nucleic Acids Res , vol.34 , pp. 3150-3160
    • Xing, Y.1    Yu, T.2    Wu, Y.N.3    Roy, M.4    Kim, J.5    Lee, C.6
  • 12
    • 50649089207 scopus 로고    scopus 로고
    • RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
    • Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y: RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 2008; 18:1509-17
    • (2008) Genome Res , vol.18 , pp. 1509-1517
    • Marioni, J.C.1    Mason, C.E.2    Mane, S.M.3    Stephens, M.4    Gilad, Y.5
  • 13
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y: Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc Series B (Methodological) 1995; 57: 289-300
    • (1995) J R Stat Soc Series B (Methodological) , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 14
    • 33947104037 scopus 로고    scopus 로고
    • Beyond microarrays: Find key transcription factors controlling signal transduction pathways
    • Kel A, Voss N, Jauregui R, Kel-Margoulis O, Wingender E: Beyond microarrays: Find key transcription factors controlling signal transduction pathways. BMC Bioinformatics 2006; 7(suppl 2):S13
    • (2006) BMC Bioinformatics , vol.7 , pp. S13
    • Kel, A.1    Voss, N.2    Jauregui, R.3    Kel-Margoulis, O.4    Wingender, E.5
  • 19
    • 84863115240 scopus 로고    scopus 로고
    • STAT5 isoforms regulate colorectal cancer cell apoptosis via reduction of mitochondrial membrane potential and generation of reactive oxygen species
    • Du W, Wang YC, Hong J, Su WY, Lin YW, Lu R, Xiong H, Fang JY: STAT5 isoforms regulate colorectal cancer cell apoptosis via reduction of mitochondrial membrane potential and generation of reactive oxygen species. J Cell Physiol 2012; 227:2421-9
    • (2012) J Cell Physiol , vol.227 , pp. 2421-2429
    • Du, W.1    Wang, Y.C.2    Hong, J.3    Su, W.Y.4    Lin, Y.W.5    Lu, R.6    Xiong, H.7    Fang, J.Y.8
  • 20
    • 84876215369 scopus 로고    scopus 로고
    • STAT1 negatively regulates hepatocellular carcinoma cell proliferation
    • Chen G, Wang H, Xie S, Ma J, Wang G: STAT1 negatively regulates hepatocellular carcinoma cell proliferation. Oncol Rep 2013; 29:2303-10
    • (2013) Oncol Rep , vol.29 , pp. 2303-2310
    • Chen, G.1    Wang, H.2    Xie, S.3    Ma, J.4    Wang, G.5
  • 22
    • 79960358205 scopus 로고    scopus 로고
    • Nuclear receptor retinoid-related orphan receptor α1 modulates the metabolic activity of human osteoblasts
    • Benderdour M, Fahmi H, Beaudet F, Fernandes JC, Shi Q: Nuclear receptor retinoid-related orphan receptor α1 modulates the metabolic activity of human osteoblasts. J Cell Biochem 2011; 112:2160-9
    • (2011) J Cell Biochem , vol.112 , pp. 2160-2169
    • Benderdour, M.1    Fahmi, H.2    Beaudet, F.3    Fernandes, J.C.4    Shi, Q.5
  • 24
    • 79955662090 scopus 로고    scopus 로고
    • Omentin, a novel adipocytokine inhibits TNF-induced vascular inflammation in human endothelial cells
    • Yamawaki H, Kuramoto J, Kameshima S, Usui T, Okada M, Hara Y: Omentin, a novel adipocytokine inhibits TNF-induced vascular inflammation in human endothelial cells. Biochem Biophys Res Commun 2011; 408:339-43
    • (2011) Biochem Biophys Res Commun , vol.408 , pp. 339-343
    • Yamawaki, H.1    Kuramoto, J.2    Kameshima, S.3    Usui, T.4    Okada, M.5    Hara, Y.6
  • 25
    • 78650047034 scopus 로고    scopus 로고
    • Metformin treatment may increase omentin-1 levels in women with polycystic ovary syndrome
    • Tan BK, Adya R, Farhatullah S, Chen J, Lehnert H, Randeva HS: Metformin treatment may increase omentin-1 levels in women with polycystic ovary syndrome. Diabetes 2010; 59:3023-31
    • (2010) Diabetes , vol.59 , pp. 3023-3031
    • Tan, B.K.1    Adya, R.2    Farhatullah, S.3    Chen, J.4    Lehnert, H.5    Randeva, H.S.6
  • 26
    • 84874430535 scopus 로고    scopus 로고
    • Role of adipokines in cardiovascular disease
    • Mattu HS, Randeva HS: Role of adipokines in cardiovascular disease. J Endocrinol 2013; 216:T17-36
    • (2013) J Endocrinol , vol.216 , pp. T17-T36
    • Mattu, H.S.1    Randeva, H.S.2
  • 28
    • 84861580275 scopus 로고    scopus 로고
    • Using gene expression to predict differences in the secretome of human omental vs. Subcutaneous adipose tissue
    • Hoggard N, Cruickshank M, Moar KM, Bashir S, Mayer CD: Using gene expression to predict differences in the secretome of human omental vs. subcutaneous adipose tissue. Obesity (Silver Spring) 2012; 20:1158-67
    • (2012) Obesity (Silver Spring) , vol.20 , pp. 1158-1167
    • Hoggard, N.1    Cruickshank, M.2    Moar, K.M.3    Bashir, S.4    Mayer, C.D.5
  • 29
    • 0029033595 scopus 로고
    • Lower cardiac troponin T levels in patients undergoing cardiopulmonary bypass and receiving high-dose aprotinin therapy indicate reduction of perioperative myocardial damage
    • Wendel HP, Heller W, Michel J, Mayer G, Ochsenfahrt C, Graeter U, Schulze J, Hoffmeister HM, Hoffmeister HE: Lower cardiac troponin T levels in patients undergoing cardiopulmonary bypass and receiving high-dose aprotinin therapy indicate reduction of perioperative myocardial damage. J Thorac Cardiovasc Surg 1995; 109:1164-72
    • (1995) J Thorac Cardiovasc Surg , vol.109 , pp. 1164-1172
    • Wendel, H.P.1    Heller, W.2    Michel, J.3    Mayer, G.4    Ochsenfahrt, C.5    Graeter, U.6    Schulze, J.7    Hoffmeister, H.M.8    Hoffmeister, H.E.9
  • 31
    • 0034528946 scopus 로고    scopus 로고
    • Isolation, characterization and mapping of the mouse and human PRG4 (proteoglycan 4) genes
    • Ikegawa S, Sano M, Koshizuka Y, Nakamura Y: Isolation, characterization and mapping of the mouse and human PRG4 (proteoglycan 4) genes. Cytogenet Cell Genet 2000; 90:291-7
    • (2000) Cytogenet Cell Genet , vol.90 , pp. 291-297
    • Ikegawa, S.1    Sano, M.2    Koshizuka, Y.3    Nakamura, Y.4
  • 33
    • 2942562086 scopus 로고    scopus 로고
    • c-Fos is a mediator of the c-myc-induced apoptotic signaling in serum-deprived hepatoma cells via the p38 mitogen-activated protein kinase pathway
    • Kalra N, Kumar V: c-Fos is a mediator of the c-myc-induced apoptotic signaling in serum-deprived hepatoma cells via the p38 mitogen-activated protein kinase pathway. J Biol Chem 2004; 279:25313-9
    • (2004) J Biol Chem , vol.279 , pp. 25313-25319
    • Kalra, N.1    Kumar, V.2
  • 34
    • 84865206803 scopus 로고    scopus 로고
    • MicroRNA-101 inhibited postinfarct cardiac fibrosis and improved left ventricular compliance via the FBJ osteosarcoma oncogene/transforming growth factor-β1 pathway
    • Pan Z, Sun X, Shan H, Wang N, Wang J, Ren J, Feng S, Xie L, Lu C, Yuan Y, Zhang Y, Wang Y, Lu Y, Yang B: MicroRNA-101 inhibited postinfarct cardiac fibrosis and improved left ventricular compliance via the FBJ osteosarcoma oncogene/transforming growth factor-β1 pathway. Circulation 2012; 126:840-50
    • (2012) Circulation , vol.126 , pp. 840-850
    • Pan, Z.1    Sun, X.2    Shan, H.3    Wang, N.4    Wang, J.5    Ren, J.6    Feng, S.7    Xie, L.8    Lu, C.9    Yuan, Y.10    Zhang, Y.11    Wang, Y.12    Lu, Y.13    Yang, B.14
  • 40
  • 41
    • 84881093397 scopus 로고    scopus 로고
    • Loss of plasma membrane integrity, complement response and formation of reactive oxygen species during early myocardial ischemia/reperfusion
    • Charlagorla P, Liu J, Patel M, Rushbrook JI, Zhang M: Loss of plasma membrane integrity, complement response and formation of reactive oxygen species during early myocardial ischemia/reperfusion. Mol Immunol 2013; 56: 507-12
    • (2013) Mol Immunol , vol.56 , pp. 507-512
    • Charlagorla, P.1    Liu, J.2    Patel, M.3    Rushbrook, J.I.4    Zhang, M.5
  • 42
    • 18844466689 scopus 로고    scopus 로고
    • Complement activation, cytokines, and adhesion molecules in children undergoing cardiac surgery with or without cardiopulmonary bypass
    • Tárnok A, Hambsch J, Emmrich F, Sack U, van Son J, Bellinghausen W, Borte M, Schneider P: Complement activation, cytokines, and adhesion molecules in children undergoing cardiac surgery with or without cardiopulmonary bypass. Pediatr Cardiol 1999; 20:113-25
    • (1999) Pediatr Cardiol , vol.20 , pp. 113-125
    • Tárnok, A.1    Hambsch, J.2    Emmrich, F.3    Sack, U.4    Van Son, J.5    Bellinghausen, W.6    Borte, M.7    Schneider, P.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.