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2
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0036365401
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Automatic annotation of genomic regulatory sequences by searching for composite clusters
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O.V. Kel-Margoulis, T.G. Ivanova, E. Wingender, and A.E. Kel, Automatic annotation of genomic regulatory sequences by searching for composite clusters, Pac. Symp. Biocomput. 7 (2002), pp. 187-198.
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(2002)
Pac. Symp. Biocomput
, vol.7
, pp. 187-198
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Kel-Margoulis, O.V.1
Ivanova, T.G.2
Wingender, E.3
Kel, A.E.4
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3
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1842433988
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Computational detection of cis-regulatory modules
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S. Aerts, P. Van Loo, G. Thijs, Y. Moreau, and B. De Moor, Computational detection of cis-regulatory modules, Bioinformatics 19 Suppl 2 (2003), pp. II5-II14.
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(2003)
Bioinformatics
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, Issue.SUPPL. 2
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Aerts, S.1
Van Loo, P.2
Thijs, G.3
Moreau, Y.4
De Moor, B.5
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4
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33646886168
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Composite module analyst: A fitness-based tool for identification of transcription factor binding site combinations
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A. Kel, T. Konovalova, T. Waleev, E. Cheremushkin, O. Kel-Margoulis, and E. Wingender, Composite module analyst: a fitness-based tool for identification of transcription factor binding site combinations, Bioinformatics 22 (2006), pp. 1190-1197.
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(2006)
Bioinformatics
, vol.22
, pp. 1190-1197
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Kel, A.1
Konovalova, T.2
Waleev, T.3
Cheremushkin, E.4
Kel-Margoulis, O.5
Wingender, E.6
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5
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0035998754
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TRANSCompel: A database on composite regulatory elements in eukaryotic genes
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O. Kel-Margoulis, A.E. Kel, I. Reuter, I.V. Deineko, and E. Wingender, TRANSCompel: a database on composite regulatory elements in eukaryotic genes, Nucleic Acids Res. 30 (2002), pp. 332-334.
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(2002)
Nucleic Acids Res
, vol.30
, pp. 332-334
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Kel-Margoulis, O.1
Kel, A.E.2
Reuter, I.3
Deineko, I.V.4
Wingender, E.5
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6
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0842288337
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Inferring cellular networks using probabilistic graphical models
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N. Friedman, Inferring cellular networks using probabilistic graphical models, Science 303 (2004), pp. 799-805.
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(2004)
Science
, vol.303
, pp. 799-805
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Friedman, N.1
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7
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0036455918
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ProML - the protein markup language for specification of protein sequences, structures and families
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D. Hanisch, R. Zimmer, and T. Lengauer, ProML - the protein markup language for specification of protein sequences, structures and families, In. Silico. Biol. 2 (2002), pp. 313-324.
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(2002)
In. Silico. Biol
, vol.2
, pp. 313-324
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Hanisch, D.1
Zimmer, R.2
Lengauer, T.3
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8
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3142706495
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New methods for joint analysis of biological networks and expression data
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F. Sohler, D. Hanisch, and R. Zimmer, New methods for joint analysis of biological networks and expression data, Bioinformatics 20 (2004), pp. 1517-1521.
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(2004)
Bioinformatics
, vol.20
, pp. 1517-1521
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Sohler, F.1
Hanisch, D.2
Zimmer, R.3
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9
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2642530481
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TRANSPATH - a high quality database focused on signal transduction
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C. Choi, M. Krull, A. Kel, O. Kel-Margoulis, S. Pistor, A. Potapov, N. Voss, and E. Wingender, TRANSPATH - a high quality database focused on signal transduction, Comp. Funct. Genom 5 (2004), pp. 163-168.
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(2004)
Comp. Funct. Genom
, vol.5
, pp. 163-168
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Choi, C.1
Krull, M.2
Kel, A.3
Kel-Margoulis, O.4
Pistor, S.5
Potapov, A.6
Voss, N.7
Wingender, E.8
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10
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0037208166
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TRANSFAC: Transcriptional regulation, from patterns to profiles
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V. Matys, E. Fricke, R. Geffers, E. Gößling, M. Haubrock, R. Hehl, K. Hornischer, D. Karas, A.E. Kel, O.V. Kel-Margoulis, D.-U. Kloos, S. Land, B. Lewicki-Potapov, H. Michael, R. Münch, I. Reuter, S. Rotert, H. Saxel, M. Scheer, S. Thiele, and E. Wingender, TRANSFAC: transcriptional regulation, from patterns to profiles, Nucleic Acids Res. 31 (2003), pp. 374-378.
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(2003)
Nucleic Acids Res
, vol.31
, pp. 374-378
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-
Matys, V.1
Fricke, E.2
Geffers, R.3
Gößling, E.4
Haubrock, M.5
Hehl, R.6
Hornischer, K.7
Karas, D.8
Kel, A.E.9
Kel-Margoulis, O.V.10
Kloos, D.-U.11
Land, S.12
Lewicki-Potapov, B.13
Michael, H.14
Münch, R.15
Reuter, I.16
Rotert, S.17
Saxel, H.18
Scheer, M.19
Thiele, S.20
Wingender, E.21
more..
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11
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0041853625
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MATCH: A tool for searching transcription factor binding sites in DNA sequences
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A.E. Kel, E. Goessling, I. Reuter, E. Cheremushkin, O.V. Kel-Margoulis, and E. Wingender, MATCH: A tool for searching transcription factor binding sites in DNA sequences, Nucleic Acids Res. 31 (2003), pp. 3576-3579.
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(2003)
Nucleic Acids Res
, vol.31
, pp. 3576-3579
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Kel, A.E.1
Goessling, E.2
Reuter, I.3
Cheremushkin, E.4
Kel-Margoulis, O.V.5
Wingender, E.6
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12
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85195087376
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A.E. Kel, N. Voss, T. Konovalova, D. Tchekmenev, P. Wabnitz, O.V. Kel-Margoulis, and E. Wingender, From composite patters to pathways - prediction of key regulators of gene expression. Proc. German Conference on Bioinformatics (GCB 2004), Bielefeld, Germany, October 4-6, 2004, [R. Giegerich and J. Stoye eds., LNI 53 GI 2004, ISBN 3-88579-382-2, 2004, pp. 189-198].
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A.E. Kel, N. Voss, T. Konovalova, D. Tchekmenev, P. Wabnitz, O.V. Kel-Margoulis, and E. Wingender, From composite patters to pathways - prediction of key regulators of gene expression. Proc. German Conference on Bioinformatics (GCB 2004), Bielefeld, Germany, October 4-6, 2004, [R. Giegerich and J. Stoye eds., LNI 53 GI 2004, ISBN 3-88579-382-2, 2004, pp. 189-198].
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13
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0035946917
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Computer-assisted identification of cell cycle-related genes: New targets for E2F transcription factors
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A.E. Kel, O.V. Kel-Margoulis, P.J. Farnham, S.M. Bartley, E. Wingender, and M.Q. Zhang, Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors, J. Mol. Biol 309 (2001), pp. 99-120.
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(2001)
J. Mol. Biol
, vol.309
, pp. 99-120
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Kel, A.E.1
Kel-Margoulis, O.V.2
Farnham, P.J.3
Bartley, S.M.4
Wingender, E.5
Zhang, M.Q.6
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14
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0038692119
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Human housekeeping genes are compact
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E. Eisenberg and E.Y. Levanon, Human housekeeping genes are compact, Trends Genet. 19 (2003), pp. 362-365.
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(2003)
Trends Genet
, vol.19
, pp. 362-365
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Eisenberg, E.1
Levanon, E.Y.2
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15
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3242735503
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Loss of detoxification in inflammatory bowel disease: Dysregulation of pregnane X receptor target genes
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T. Langmann, C. Moehle, R. Mauerer, M. Scharl, G. Liebisch, A. Zahn, W. Stremmel, and G. Schmitz, Loss of detoxification in inflammatory bowel disease: dysregulation of pregnane X receptor target genes, Gastroenterology 127 (2004), pp. 26-40.
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(2004)
Gastroenterology
, vol.127
, pp. 26-40
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Langmann, T.1
Moehle, C.2
Mauerer, R.3
Scharl, M.4
Liebisch, G.5
Zahn, A.6
Stremmel, W.7
Schmitz, G.8
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