-
1
-
-
77749300939
-
Animal models for evaluation of influenza vaccines
-
Tripp, R.A. & Tompkins, S.M. Animal models for evaluation of influenza vaccines. Curr. Top. Microbiol. Immunol. 333, 397-412 (2009).
-
(2009)
Curr. Top. Microbiol. Immunol.
, vol.333
, pp. 397-412
-
-
Tripp, R.A.1
Tompkins, S.M.2
-
2
-
-
35348888890
-
Human and avian influenza viruses target different cells in the lower respiratory tract of humans and other mammals
-
van Riel, D. et al. Human and avian influenza viruses target different cells in the lower respiratory tract of humans and other mammals. Am. J. Pathol. 171, 1215-1223 (2007).
-
(2007)
Am. J. Pathol.
, vol.171
, pp. 1215-1223
-
-
Van Riel, D.1
-
3
-
-
80052284394
-
The ferret as a model organism to study influenza A virus infection
-
Belser, J.A., Katz, J.M. & Tumpey, T.M. The ferret as a model organism to study influenza A virus infection. Dis. Model. Mech. 4, 575-579 (2011).
-
(2011)
Dis. Model. Mech.
, vol.4
, pp. 575-579
-
-
Belser, J.A.1
Katz, J.M.2
Tumpey, T.M.3
-
4
-
-
79551660596
-
Possible increased pathogenicity of pandemic (H1N1) 2009 influenza virus upon reassortment
-
Schrauwen, E.J. et al. Possible increased pathogenicity of pandemic (H1N1) 2009 influenza virus upon reassortment. Emerg. Infect. Dis. 17, 200-208 (2011).
-
(2011)
Emerg. Infect. Dis.
, vol.17
, pp. 200-208
-
-
Schrauwen, E.J.1
-
5
-
-
79952178131
-
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
-
Gnerre, S. et al. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl. Acad. Sci. USA 108, 1513-1518 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 1513-1518
-
-
Gnerre, S.1
-
6
-
-
2442707676
-
The Ensembl automatic gene annotation system
-
Curwen, V. et al. The Ensembl automatic gene annotation system. Genome Res. 14, 942-950 (2004).
-
(2004)
Genome Res.
, vol.14
, pp. 942-950
-
-
Curwen, V.1
-
7
-
-
84874724662
-
Update on activities at the Universal Protein Resource (UniProt) in 2013
-
UniProt Consortium. Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Res. 41, D43-D47 (2013).
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. D43-D47
-
-
UniProt Consortium1
-
8
-
-
80052978224
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
-
Cabili, M.N. et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927 (2011).
-
(2011)
Genes Dev.
, vol.25
, pp. 1915-1927
-
-
Cabili, M.N.1
-
9
-
-
11144358198
-
A gene atlas of the mouse and human protein-encoding transcriptomes
-
Su, A.I. et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl. Acad. Sci. USA 101, 6062-6067 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6062-6067
-
-
Su, A.I.1
-
10
-
-
84867581744
-
A validated regulatory network for Th17 cell specification
-
Ciofani, M. et al. A validated regulatory network for Th17 cell specification. Cell 151, 289-303 (2012).
-
(2012)
Cell
, vol.151
, pp. 289-303
-
-
Ciofani, M.1
-
11
-
-
33645972581
-
H5N1 virus attachment to lower respiratory tract
-
van Riel, D. et al. H5N1 virus attachment to lower respiratory tract. Science 312, 399 (2006).
-
(2006)
Science
, vol.312
, pp. 399
-
-
Van Riel, D.1
-
12
-
-
79961091166
-
Suppression of cytokine storm with a sphingosine analog provides protection against pathogenic influenza virus
-
Walsh, K.B. et al. Suppression of cytokine storm with a sphingosine analog provides protection against pathogenic influenza virus. Proc. Natl. Acad. Sci. USA 108, 12018-12023 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 12018-12023
-
-
Walsh, K.B.1
-
13
-
-
60849108052
-
A critical role for the sphingosine analog AAL-R in dampening the cytokine response during influenza virus infection
-
Marsolais, D. et al. A critical role for the sphingosine analog AAL-R in dampening the cytokine response during influenza virus infection. Proc. Natl. Acad. Sci. USA 106, 1560-1565 (2009).
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 1560-1565
-
-
Marsolais, D.1
-
14
-
-
77951817855
-
Nuocytes represent a new innate effector leUK.Ocyte that mediates type-2 immunity
-
Neill, D.R. et al. Nuocytes represent a new innate effector leUK.ocyte that mediates type-2 immunity. Nature 464, 1367-1370 (2010).
-
(2010)
Nature
, vol.464
, pp. 1367-1370
-
-
Neill, D.R.1
-
15
-
-
46949101054
-
Maturing dendritic cells are an important source of IL-29 and IL-20 that may cooperatively increase the innate immunity of keratinocytes
-
Wolk, K. et al. Maturing dendritic cells are an important source of IL-29 and IL-20 that may cooperatively increase the innate immunity of keratinocytes. J. Leukoc. Biol. 83, 1181-1193 (2008).
-
(2008)
J. Leukoc. Biol.
, vol.83
, pp. 1181-1193
-
-
Wolk, K.1
-
16
-
-
77956379893
-
Disease phenotype of a ferret CFTR-knockout model of cystic fibrosis
-
Sun, X. et al. Disease phenotype of a ferret CFTR-knockout model of cystic fibrosis. J. Clin. Invest. 120, 3149-3160 (2010).
-
(2010)
J. Clin. Invest.
, vol.120
, pp. 3149-3160
-
-
Sun, X.1
-
17
-
-
84895512997
-
Lung phenotype of juvenile and adult cystic fibrosis transmembrane conductance regulator-knockout ferrets
-
Sun, X. et al. Lung phenotype of juvenile and adult cystic fibrosis transmembrane conductance regulator-knockout ferrets. Am. J. Respir. Cell Mol. Biol. 50, 502-512 (2014).
-
(2014)
Am. J. Respir. Cell Mol. Biol.
, vol.50
, pp. 502-512
-
-
Sun, X.1
-
18
-
-
84867166324
-
Abnormal endocrine pancreas function at birth in cystic fibrosis ferrets
-
Olivier, A.K. et al. Abnormal endocrine pancreas function at birth in cystic fibrosis ferrets. J. Clin. Invest. 122, 3755-3768 (2012).
-
(2012)
J. Clin. Invest.
, vol.122
, pp. 3755-3768
-
-
Olivier, A.K.1
-
19
-
-
80055096007
-
Differential global gene expression in cystic fibrosis nasal and bronchial epithelium
-
Ogilvie, V. et al. Differential global gene expression in cystic fibrosis nasal and bronchial epithelium. Genomics 98, 327-336 (2011).
-
(2011)
Genomics
, vol.98
, pp. 327-336
-
-
Ogilvie, V.1
-
20
-
-
0028784322
-
Inflammatory cytokines in cystic fibrosis lungs
-
Bonfield, T.L. et al. Inflammatory cytokines in cystic fibrosis lungs. Am. J. Respir. Crit. Care Med. 152, 2111-2118 (1995).
-
(1995)
Am. J. Respir. Crit. Care Med.
, vol.152
, pp. 2111-2118
-
-
Bonfield, T.L.1
-
21
-
-
84878113691
-
Respiratory bacterial infections in cystic fibrosis
-
Ciofu, O., Hansen, C.R. & Hoiby, N. Respiratory bacterial infections in cystic fibrosis. Curr. Opin. Pulm. Med. 19, 251-258 (2013).
-
(2013)
Curr. Opin. Pulm. Med.
, vol.19
, pp. 251-258
-
-
Ciofu, O.1
Hansen, C.R.2
Hoiby, N.3
-
22
-
-
77949915021
-
Conservation genetics in transition to conservation genomics
-
Ouborg, N.J., Pertoldi, C., Loeschcke, V., Bijlsma, R.K. & Hedrick, P.W. Conservation genetics in transition to conservation genomics. Trends Genet. 26, 177-187 (2010).
-
(2010)
Trends Genet.
, vol.26
, pp. 177-187
-
-
Ouborg, N.J.1
Pertoldi, C.2
Loeschcke, V.3
Bijlsma, R.K.4
Hedrick, P.W.5
-
23
-
-
0036661385
-
Genetic diversity and fitness in black-footed ferrets before and during a bottleneck
-
Wisely, S.M., Buskirk, S.W., Fleming, M.A., McDonald, D.B. & Ostrander, E.A. Genetic diversity and fitness in black-footed ferrets before and during a bottleneck. J. Hered. 93, 231-237 (2002).
-
(2002)
J. Hered.
, vol.93
, pp. 231-237
-
-
Wisely, S.M.1
Buskirk, S.W.2
Fleming, M.A.3
McDonald, D.B.4
Ostrander, E.A.5
-
24
-
-
0038675070
-
Evaluation of the genetic management of the endangered black-footed ferret (Mustela nigripes)
-
Wisely, S.M., McDonald, D.B. & Buskirk, S.W. Evaluation of the genetic management of the endangered black-footed ferret (Mustela nigripes). Zoo Biol. 22, 287-298 (2003).
-
(2003)
Zoo Biol.
, vol.22
, pp. 287-298
-
-
Wisely, S.M.1
McDonald, D.B.2
Buskirk, S.W.3
-
25
-
-
0033814268
-
Genomic homology of the domestic ferret with cats and humans
-
Cavagna, P., Menotti, A. & Stanyon, R. Genomic homology of the domestic ferret with cats and humans. Mamm. Genome 11, 866-870 (2000).
-
(2000)
Mamm. Genome
, vol.11
, pp. 866-870
-
-
Cavagna, P.1
Menotti, A.2
Stanyon, R.3
-
26
-
-
77956340995
-
Comprehensive comparative analysis of strand-specific RNA sequencing methods
-
Levin, J.Z. et al. Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat. Methods 7, 709-715 (2010).
-
(2010)
Nat. Methods
, vol.7
, pp. 709-715
-
-
Levin, J.Z.1
-
27
-
-
79960264362
-
Full-length transcriptome assembly from RNA-Seq data without a reference genome
-
Grabherr, M.G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29, 644-652 (2011).
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 644-652
-
-
Grabherr, M.G.1
-
28
-
-
78651316211
-
OMA 2011: Orthology inference among 1000 complete genomes
-
Altenhoff, A.M., Schneider, A., Gonnet, G.H. & Dessimoz, C. OMA 2011: orthology inference among 1000 complete genomes. Nucleic Acids Res. 39, D289-D294 (2011).
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. D289-D294
-
-
Altenhoff, A.M.1
Schneider, A.2
Gonnet, G.H.3
Dessimoz, C.4
-
29
-
-
84872287798
-
Inferring hierarchical orthologous groups from orthologous gene pairs
-
Altenhoff, A.M., Gil, M., Gonnet, G.H. & Dessimoz, C. Inferring hierarchical orthologous groups from orthologous gene pairs. PLoS ONE 8, e53786 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e53786
-
-
Altenhoff, A.M.1
Gil, M.2
Gonnet, G.H.3
Dessimoz, C.4
-
30
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thoUSA.Nds of taxa and mixed models
-
Stamatakis, A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thoUSA.nds of taxa and mixed models. Bioinformatics 22, 2688-2690 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
31
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
-
Guindon, S. et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321 (2010).
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
-
32
-
-
0026656815
-
Exhaustive matching of the entire protein sequence database
-
Gonnet, G.H., Cohen, M.A. & Benner, S.A. Exhaustive matching of the entire protein sequence database. Science 256, 1443-1445 (1992).
-
(1992)
Science
, vol.256
, pp. 1443-1445
-
-
Gonnet, G.H.1
Cohen, M.A.2
Benner, S.A.3
-
33
-
-
27344435774
-
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
-
Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102, 15545-15550 (2005).
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 15545-15550
-
-
Subramanian, A.1
-
34
-
-
33750842131
-
Hsp90 cochaperone Aha1 downregulation rescues misfolding of CFTR in cystic fibrosis
-
Wang, X. et al. Hsp90 cochaperone Aha1 downregulation rescues misfolding of CFTR in cystic fibrosis. Cell 127, 803-815 (2006).
-
(2006)
Cell
, vol.127
, pp. 803-815
-
-
Wang, X.1
-
35
-
-
0031114483
-
GeneCards: Integrating information about genes, proteins and diseases
-
Rebhan, M., Chalifa-Caspi, V., Prilusky, J. & Lancet, D. GeneCards: integrating information about genes, proteins and diseases. Trends Genet. 13, 163 (1997).
-
(1997)
Trends Genet.
, vol.13
, pp. 163
-
-
Rebhan, M.1
Chalifa-Caspi, V.2
Prilusky, J.3
Lancet, D.4
-
36
-
-
18744383071
-
GMAP: A genomic mapping and alignment program for mRNA and EST sequences
-
Wu, T.D. & Watanabe, C.K. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 21, 1859-1875 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
37
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
38
-
-
84858041341
-
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
-
McCarthy, D.J., Chen, Y. & Smyth, G.K. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Res. 40, 4288-4297 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 4288-4297
-
-
McCarthy, D.J.1
Chen, Y.2
Smyth, G.K.3
-
39
-
-
79955431205
-
Impact of amino acid mutations in PB2, PB1-F2, and NS1 on the replication and pathogenicity of pandemic (H1N1) 2009 influenza viruses
-
Ozawa, M. et al. Impact of amino acid mutations in PB2, PB1-F2, and NS1 on the replication and pathogenicity of pandemic (H1N1) 2009 influenza viruses. J. Virol. 85, 4596-4601 (2011).
-
(2011)
J. Virol.
, vol.85
, pp. 4596-4601
-
-
Ozawa, M.1
-
40
-
-
58849167264
-
Viral RNA polymerase complex promotes optimal growth of 1918 virus in the lower respiratory tract of ferrets
-
Watanabe, T. et al. Viral RNA polymerase complex promotes optimal growth of 1918 virus in the lower respiratory tract of ferrets. Proc. Natl. Acad. Sci. USA 106, 588-592 (2009).
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 588-592
-
-
Watanabe, T.1
-
41
-
-
13044287344
-
Generation of influenza A viruses entirely from cloned cDNAs
-
Neumann, G. et al. Generation of influenza A viruses entirely from cloned cDNAs. Proc. Natl. Acad. Sci. USA 96, 9345-9350 (1999).
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9345-9350
-
-
Neumann, G.1
-
42
-
-
84871809302
-
STAR: Ultrafast universal RNA-seq aligner
-
Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 15-21
-
-
Dobin, A.1
|