메뉴 건너뛰기




Volumn 32, Issue 12, 2014, Pages 1250-1255

The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease

(38)  Peng, Xinxia a   Alföldi, Jessica b   Gori, Kevin c   Eisfeld, Amie J d   Tyler, Scott R e   Tisoncik Go, Jennifer a   Brawand, David b,r   Law, G Lynn a   Skunca, Nives f,g   Hatta, Masato d   Gasper, David J d   Kelly, Sara M a   Chang, Jean a   Thomas, Matthew J a   Johnson, Jeremy b   Berlin, Aaron M b   Lara, Marcia b,r,s   Russell, Pamela b,r,t   Swofford, Ross b   Turner Maier, Jason b   more..


Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL ORGANS; GENES; HISTOLOGY; RNA; TISSUE; VIRUSES;

EID: 84924303212     PISSN: 10870156     EISSN: 15461696     Source Type: Journal    
DOI: 10.1038/nbt.3079     Document Type: Article
Times cited : (108)

References (42)
  • 1
    • 77749300939 scopus 로고    scopus 로고
    • Animal models for evaluation of influenza vaccines
    • Tripp, R.A. & Tompkins, S.M. Animal models for evaluation of influenza vaccines. Curr. Top. Microbiol. Immunol. 333, 397-412 (2009).
    • (2009) Curr. Top. Microbiol. Immunol. , vol.333 , pp. 397-412
    • Tripp, R.A.1    Tompkins, S.M.2
  • 2
    • 35348888890 scopus 로고    scopus 로고
    • Human and avian influenza viruses target different cells in the lower respiratory tract of humans and other mammals
    • van Riel, D. et al. Human and avian influenza viruses target different cells in the lower respiratory tract of humans and other mammals. Am. J. Pathol. 171, 1215-1223 (2007).
    • (2007) Am. J. Pathol. , vol.171 , pp. 1215-1223
    • Van Riel, D.1
  • 3
    • 80052284394 scopus 로고    scopus 로고
    • The ferret as a model organism to study influenza A virus infection
    • Belser, J.A., Katz, J.M. & Tumpey, T.M. The ferret as a model organism to study influenza A virus infection. Dis. Model. Mech. 4, 575-579 (2011).
    • (2011) Dis. Model. Mech. , vol.4 , pp. 575-579
    • Belser, J.A.1    Katz, J.M.2    Tumpey, T.M.3
  • 4
    • 79551660596 scopus 로고    scopus 로고
    • Possible increased pathogenicity of pandemic (H1N1) 2009 influenza virus upon reassortment
    • Schrauwen, E.J. et al. Possible increased pathogenicity of pandemic (H1N1) 2009 influenza virus upon reassortment. Emerg. Infect. Dis. 17, 200-208 (2011).
    • (2011) Emerg. Infect. Dis. , vol.17 , pp. 200-208
    • Schrauwen, E.J.1
  • 5
    • 79952178131 scopus 로고    scopus 로고
    • High-quality draft assemblies of mammalian genomes from massively parallel sequence data
    • Gnerre, S. et al. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proc. Natl. Acad. Sci. USA 108, 1513-1518 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 1513-1518
    • Gnerre, S.1
  • 6
    • 2442707676 scopus 로고    scopus 로고
    • The Ensembl automatic gene annotation system
    • Curwen, V. et al. The Ensembl automatic gene annotation system. Genome Res. 14, 942-950 (2004).
    • (2004) Genome Res. , vol.14 , pp. 942-950
    • Curwen, V.1
  • 7
    • 84874724662 scopus 로고    scopus 로고
    • Update on activities at the Universal Protein Resource (UniProt) in 2013
    • UniProt Consortium. Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Res. 41, D43-D47 (2013).
    • (2013) Nucleic Acids Res. , vol.41 , pp. D43-D47
    • UniProt Consortium1
  • 8
    • 80052978224 scopus 로고    scopus 로고
    • Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
    • Cabili, M.N. et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. Genes Dev. 25, 1915-1927 (2011).
    • (2011) Genes Dev. , vol.25 , pp. 1915-1927
    • Cabili, M.N.1
  • 9
    • 11144358198 scopus 로고    scopus 로고
    • A gene atlas of the mouse and human protein-encoding transcriptomes
    • Su, A.I. et al. A gene atlas of the mouse and human protein-encoding transcriptomes. Proc. Natl. Acad. Sci. USA 101, 6062-6067 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 6062-6067
    • Su, A.I.1
  • 10
    • 84867581744 scopus 로고    scopus 로고
    • A validated regulatory network for Th17 cell specification
    • Ciofani, M. et al. A validated regulatory network for Th17 cell specification. Cell 151, 289-303 (2012).
    • (2012) Cell , vol.151 , pp. 289-303
    • Ciofani, M.1
  • 11
    • 33645972581 scopus 로고    scopus 로고
    • H5N1 virus attachment to lower respiratory tract
    • van Riel, D. et al. H5N1 virus attachment to lower respiratory tract. Science 312, 399 (2006).
    • (2006) Science , vol.312 , pp. 399
    • Van Riel, D.1
  • 12
    • 79961091166 scopus 로고    scopus 로고
    • Suppression of cytokine storm with a sphingosine analog provides protection against pathogenic influenza virus
    • Walsh, K.B. et al. Suppression of cytokine storm with a sphingosine analog provides protection against pathogenic influenza virus. Proc. Natl. Acad. Sci. USA 108, 12018-12023 (2011).
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 12018-12023
    • Walsh, K.B.1
  • 13
    • 60849108052 scopus 로고    scopus 로고
    • A critical role for the sphingosine analog AAL-R in dampening the cytokine response during influenza virus infection
    • Marsolais, D. et al. A critical role for the sphingosine analog AAL-R in dampening the cytokine response during influenza virus infection. Proc. Natl. Acad. Sci. USA 106, 1560-1565 (2009).
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 1560-1565
    • Marsolais, D.1
  • 14
    • 77951817855 scopus 로고    scopus 로고
    • Nuocytes represent a new innate effector leUK.Ocyte that mediates type-2 immunity
    • Neill, D.R. et al. Nuocytes represent a new innate effector leUK.ocyte that mediates type-2 immunity. Nature 464, 1367-1370 (2010).
    • (2010) Nature , vol.464 , pp. 1367-1370
    • Neill, D.R.1
  • 15
    • 46949101054 scopus 로고    scopus 로고
    • Maturing dendritic cells are an important source of IL-29 and IL-20 that may cooperatively increase the innate immunity of keratinocytes
    • Wolk, K. et al. Maturing dendritic cells are an important source of IL-29 and IL-20 that may cooperatively increase the innate immunity of keratinocytes. J. Leukoc. Biol. 83, 1181-1193 (2008).
    • (2008) J. Leukoc. Biol. , vol.83 , pp. 1181-1193
    • Wolk, K.1
  • 16
    • 77956379893 scopus 로고    scopus 로고
    • Disease phenotype of a ferret CFTR-knockout model of cystic fibrosis
    • Sun, X. et al. Disease phenotype of a ferret CFTR-knockout model of cystic fibrosis. J. Clin. Invest. 120, 3149-3160 (2010).
    • (2010) J. Clin. Invest. , vol.120 , pp. 3149-3160
    • Sun, X.1
  • 17
    • 84895512997 scopus 로고    scopus 로고
    • Lung phenotype of juvenile and adult cystic fibrosis transmembrane conductance regulator-knockout ferrets
    • Sun, X. et al. Lung phenotype of juvenile and adult cystic fibrosis transmembrane conductance regulator-knockout ferrets. Am. J. Respir. Cell Mol. Biol. 50, 502-512 (2014).
    • (2014) Am. J. Respir. Cell Mol. Biol. , vol.50 , pp. 502-512
    • Sun, X.1
  • 18
    • 84867166324 scopus 로고    scopus 로고
    • Abnormal endocrine pancreas function at birth in cystic fibrosis ferrets
    • Olivier, A.K. et al. Abnormal endocrine pancreas function at birth in cystic fibrosis ferrets. J. Clin. Invest. 122, 3755-3768 (2012).
    • (2012) J. Clin. Invest. , vol.122 , pp. 3755-3768
    • Olivier, A.K.1
  • 19
    • 80055096007 scopus 로고    scopus 로고
    • Differential global gene expression in cystic fibrosis nasal and bronchial epithelium
    • Ogilvie, V. et al. Differential global gene expression in cystic fibrosis nasal and bronchial epithelium. Genomics 98, 327-336 (2011).
    • (2011) Genomics , vol.98 , pp. 327-336
    • Ogilvie, V.1
  • 20
    • 0028784322 scopus 로고
    • Inflammatory cytokines in cystic fibrosis lungs
    • Bonfield, T.L. et al. Inflammatory cytokines in cystic fibrosis lungs. Am. J. Respir. Crit. Care Med. 152, 2111-2118 (1995).
    • (1995) Am. J. Respir. Crit. Care Med. , vol.152 , pp. 2111-2118
    • Bonfield, T.L.1
  • 21
    • 84878113691 scopus 로고    scopus 로고
    • Respiratory bacterial infections in cystic fibrosis
    • Ciofu, O., Hansen, C.R. & Hoiby, N. Respiratory bacterial infections in cystic fibrosis. Curr. Opin. Pulm. Med. 19, 251-258 (2013).
    • (2013) Curr. Opin. Pulm. Med. , vol.19 , pp. 251-258
    • Ciofu, O.1    Hansen, C.R.2    Hoiby, N.3
  • 23
    • 0036661385 scopus 로고    scopus 로고
    • Genetic diversity and fitness in black-footed ferrets before and during a bottleneck
    • Wisely, S.M., Buskirk, S.W., Fleming, M.A., McDonald, D.B. & Ostrander, E.A. Genetic diversity and fitness in black-footed ferrets before and during a bottleneck. J. Hered. 93, 231-237 (2002).
    • (2002) J. Hered. , vol.93 , pp. 231-237
    • Wisely, S.M.1    Buskirk, S.W.2    Fleming, M.A.3    McDonald, D.B.4    Ostrander, E.A.5
  • 24
    • 0038675070 scopus 로고    scopus 로고
    • Evaluation of the genetic management of the endangered black-footed ferret (Mustela nigripes)
    • Wisely, S.M., McDonald, D.B. & Buskirk, S.W. Evaluation of the genetic management of the endangered black-footed ferret (Mustela nigripes). Zoo Biol. 22, 287-298 (2003).
    • (2003) Zoo Biol. , vol.22 , pp. 287-298
    • Wisely, S.M.1    McDonald, D.B.2    Buskirk, S.W.3
  • 25
    • 0033814268 scopus 로고    scopus 로고
    • Genomic homology of the domestic ferret with cats and humans
    • Cavagna, P., Menotti, A. & Stanyon, R. Genomic homology of the domestic ferret with cats and humans. Mamm. Genome 11, 866-870 (2000).
    • (2000) Mamm. Genome , vol.11 , pp. 866-870
    • Cavagna, P.1    Menotti, A.2    Stanyon, R.3
  • 26
    • 77956340995 scopus 로고    scopus 로고
    • Comprehensive comparative analysis of strand-specific RNA sequencing methods
    • Levin, J.Z. et al. Comprehensive comparative analysis of strand-specific RNA sequencing methods. Nat. Methods 7, 709-715 (2010).
    • (2010) Nat. Methods , vol.7 , pp. 709-715
    • Levin, J.Z.1
  • 27
    • 79960264362 scopus 로고    scopus 로고
    • Full-length transcriptome assembly from RNA-Seq data without a reference genome
    • Grabherr, M.G. et al. Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat. Biotechnol. 29, 644-652 (2011).
    • (2011) Nat. Biotechnol. , vol.29 , pp. 644-652
    • Grabherr, M.G.1
  • 29
    • 84872287798 scopus 로고    scopus 로고
    • Inferring hierarchical orthologous groups from orthologous gene pairs
    • Altenhoff, A.M., Gil, M., Gonnet, G.H. & Dessimoz, C. Inferring hierarchical orthologous groups from orthologous gene pairs. PLoS ONE 8, e53786 (2013).
    • (2013) PLoS ONE , vol.8 , pp. e53786
    • Altenhoff, A.M.1    Gil, M.2    Gonnet, G.H.3    Dessimoz, C.4
  • 30
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thoUSA.Nds of taxa and mixed models
    • Stamatakis, A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thoUSA.nds of taxa and mixed models. Bioinformatics 22, 2688-2690 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 31
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0
    • Guindon, S. et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307-321 (2010).
    • (2010) Syst. Biol. , vol.59 , pp. 307-321
    • Guindon, S.1
  • 32
    • 0026656815 scopus 로고
    • Exhaustive matching of the entire protein sequence database
    • Gonnet, G.H., Cohen, M.A. & Benner, S.A. Exhaustive matching of the entire protein sequence database. Science 256, 1443-1445 (1992).
    • (1992) Science , vol.256 , pp. 1443-1445
    • Gonnet, G.H.1    Cohen, M.A.2    Benner, S.A.3
  • 33
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102, 15545-15550 (2005).
    • (2005) Proc. Natl. Acad. Sci. USA , vol.102 , pp. 15545-15550
    • Subramanian, A.1
  • 34
    • 33750842131 scopus 로고    scopus 로고
    • Hsp90 cochaperone Aha1 downregulation rescues misfolding of CFTR in cystic fibrosis
    • Wang, X. et al. Hsp90 cochaperone Aha1 downregulation rescues misfolding of CFTR in cystic fibrosis. Cell 127, 803-815 (2006).
    • (2006) Cell , vol.127 , pp. 803-815
    • Wang, X.1
  • 35
    • 0031114483 scopus 로고    scopus 로고
    • GeneCards: Integrating information about genes, proteins and diseases
    • Rebhan, M., Chalifa-Caspi, V., Prilusky, J. & Lancet, D. GeneCards: integrating information about genes, proteins and diseases. Trends Genet. 13, 163 (1997).
    • (1997) Trends Genet. , vol.13 , pp. 163
    • Rebhan, M.1    Chalifa-Caspi, V.2    Prilusky, J.3    Lancet, D.4
  • 36
    • 18744383071 scopus 로고    scopus 로고
    • GMAP: A genomic mapping and alignment program for mRNA and EST sequences
    • Wu, T.D. & Watanabe, C.K. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 21, 1859-1875 (2005).
    • (2005) Bioinformatics , vol.21 , pp. 1859-1875
    • Wu, T.D.1    Watanabe, C.K.2
  • 37
    • 77952123055 scopus 로고    scopus 로고
    • Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
    • Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
    • (2010) Nat. Biotechnol. , vol.28 , pp. 511-515
    • Trapnell, C.1
  • 38
    • 84858041341 scopus 로고    scopus 로고
    • Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
    • McCarthy, D.J., Chen, Y. & Smyth, G.K. Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Res. 40, 4288-4297 (2012).
    • (2012) Nucleic Acids Res. , vol.40 , pp. 4288-4297
    • McCarthy, D.J.1    Chen, Y.2    Smyth, G.K.3
  • 39
    • 79955431205 scopus 로고    scopus 로고
    • Impact of amino acid mutations in PB2, PB1-F2, and NS1 on the replication and pathogenicity of pandemic (H1N1) 2009 influenza viruses
    • Ozawa, M. et al. Impact of amino acid mutations in PB2, PB1-F2, and NS1 on the replication and pathogenicity of pandemic (H1N1) 2009 influenza viruses. J. Virol. 85, 4596-4601 (2011).
    • (2011) J. Virol. , vol.85 , pp. 4596-4601
    • Ozawa, M.1
  • 40
    • 58849167264 scopus 로고    scopus 로고
    • Viral RNA polymerase complex promotes optimal growth of 1918 virus in the lower respiratory tract of ferrets
    • Watanabe, T. et al. Viral RNA polymerase complex promotes optimal growth of 1918 virus in the lower respiratory tract of ferrets. Proc. Natl. Acad. Sci. USA 106, 588-592 (2009).
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 588-592
    • Watanabe, T.1
  • 41
    • 13044287344 scopus 로고    scopus 로고
    • Generation of influenza A viruses entirely from cloned cDNAs
    • Neumann, G. et al. Generation of influenza A viruses entirely from cloned cDNAs. Proc. Natl. Acad. Sci. USA 96, 9345-9350 (1999).
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 9345-9350
    • Neumann, G.1
  • 42
    • 84871809302 scopus 로고    scopus 로고
    • STAR: Ultrafast universal RNA-seq aligner
    • Dobin, A. et al. STAR: ultrafast universal RNA-seq aligner. Bioinformatics 29, 15-21 (2013).
    • (2013) Bioinformatics , vol.29 , pp. 15-21
    • Dobin, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.