-
1
-
-
33846951759
-
Biomass recalcitrance: engineering plants and enzymes for biofuels production
-
Himmel ME, Ding SY, Johnson DK, Adney WS, Nimlos MR, et al. (2007) Biomass recalcitrance: engineering plants and enzymes for biofuels production. Science 315: 804–807.
-
(2007)
Science
, vol.315
, pp. 804-807
-
-
Himmel, M.E.1
Ding, S.Y.2
Johnson, D.K.3
Adney, W.S.4
Nimlos, M.R.5
-
2
-
-
84875769164
-
Long-term strain improvements accumulate mutations in regulatory elements responsible for hyper-production of cellulolytic enzymes
-
Liu G, Zhang L, Qin Y, Zou G, Li Z, et al. (2013) Long-term strain improvements accumulate mutations in regulatory elements responsible for hyper-production of cellulolytic enzymes. Sci Rep 3: 1569.
-
(2013)
Sci Rep
, vol.3
, pp. 1569
-
-
Liu, G.1
Zhang, L.2
Qin, Y.3
Zou, G.4
Li, Z.5
-
3
-
-
70349772781
-
Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina
-
Kubicek CP, Mikus M, Schuster A, Schmoll M, Seiboth B, (2009) Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina. Biotechnol Biofuels 2: 19.
-
(2009)
Biotechnol Biofuels
, vol.2
, pp. 19
-
-
Kubicek, C.P.1
Mikus, M.2
Schuster, A.3
Schmoll, M.4
Seiboth, B.5
-
4
-
-
0031660773
-
The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger
-
van Peij NN, Gielkens MM, de Vries RP, Visser J, de Graaff LH, (1998) The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger. Appl Environ Microbiol 64: 3615–3619.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3615-3619
-
-
van Peij, N.N.1
Gielkens, M.M.2
de Vries, R.P.3
Visser, J.4
de Graaff, L.H.5
-
5
-
-
0032867401
-
Two cellobiohydrolase-encoding genes from Aspergillus niger require D-xylose and the xylanolytic transcriptional activator XlnR for their expression
-
Gielkens MM, Dekkers E, Visser J, de Graaff LH, (1999) Two cellobiohydrolase-encoding genes from Aspergillus niger require D-xylose and the xylanolytic transcriptional activator XlnR for their expression. Appl Environ Microbiol 65: 4340–4345.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4340-4345
-
-
Gielkens, M.M.1
Dekkers, E.2
Visser, J.3
de Graaff, L.H.4
-
6
-
-
33845671822
-
Xyr1 (xylanase regulator 1) regulates both the hydrolytic enzyme system and D-xylose metabolism in Hypocrea jecorina
-
Stricker AR, Grosstessner-Hain K, Wurleitner E, Mach RL, (2006) Xyr1 (xylanase regulator 1) regulates both the hydrolytic enzyme system and D-xylose metabolism in Hypocrea jecorina. Eukaryot Cell 5: 2128–2137.
-
(2006)
Eukaryot Cell
, vol.5
, pp. 2128-2137
-
-
Stricker, A.R.1
Grosstessner-Hain, K.2
Wurleitner, E.3
Mach, R.L.4
-
7
-
-
38649100624
-
Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei)
-
Stricker AR, Mach RL, de Graaff LH, (2008) Regulation of transcription of cellulases- and hemicellulases-encoding genes in Aspergillus niger and Hypocrea jecorina (Trichoderma reesei). Appl Microbiol Biotechnol 78: 211–220.
-
(2008)
Appl Microbiol Biotechnol
, vol.78
, pp. 211-220
-
-
Stricker, A.R.1
Mach, R.L.2
de Graaff, L.H.3
-
8
-
-
84860805742
-
Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi
-
Coradetti ST, Craig JP, Xiong Y, Shock T, Tian C, et al. (2012) Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi. Proc Natl Acad Sci U S A 109: 7397–7402.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 7397-7402
-
-
Coradetti, S.T.1
Craig, J.P.2
Xiong, Y.3
Shock, T.4
Tian, C.5
-
9
-
-
84859972859
-
Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins
-
Znameroski EA, Coradetti ST, Roche CM, Tsai JC, Iavarone AT, et al. (2012) Induction of lignocellulose-degrading enzymes in Neurospora crassa by cellodextrins. Proc Natl Acad Sci U S A 109: 6012–6017.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 6012-6017
-
-
Znameroski, E.A.1
Coradetti, S.T.2
Roche, C.M.3
Tsai, J.C.4
Iavarone, A.T.5
-
10
-
-
84893450996
-
Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa
-
Coradetti ST, Xiong Y, Glass NL, (2013) Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes in Neurospora crassa. Microbiologyopen 2: 595–609.
-
(2013)
Microbiologyopen
, vol.2
, pp. 595-609
-
-
Coradetti, S.T.1
Xiong, Y.2
Glass, N.L.3
-
11
-
-
84875439343
-
ManR, a transcriptional regulator of the beta-mannan utilization system, controls the cellulose utilization system in Aspergillus oryzae
-
Ogawa M, Kobayashi T, Koyama Y, (2013) ManR, a transcriptional regulator of the beta-mannan utilization system, controls the cellulose utilization system in Aspergillus oryzae. Biosci Biotechnol Biochem 77: 426–429.
-
(2013)
Biosci Biotechnol Biochem
, vol.77
, pp. 426-429
-
-
Ogawa, M.1
Kobayashi, T.2
Koyama, Y.3
-
12
-
-
84875262802
-
Regulation of cellulolytic genes by McmA, the SRF-MADS box protein in Aspergillus nidulans
-
Yamakawa Y, Endo Y, Li N, Yoshizawa M, Aoyama M, et al. (2013) Regulation of cellulolytic genes by McmA, the SRF-MADS box protein in Aspergillus nidulans. Biochem Biophys Res Commun 431: 777–782.
-
(2013)
Biochem Biophys Res Commun
, vol.431
, pp. 777-782
-
-
Yamakawa, Y.1
Endo, Y.2
Li, N.3
Yoshizawa, M.4
Aoyama, M.5
-
13
-
-
84874116514
-
A novel transcriptional regulator, ClbR, controls the cellobiose- and cellulose-responsive induction of cellulase and xylanase genes regulated by two distinct signaling pathways in Aspergillus aculeatus
-
Kunitake E, Tani S, Sumitani J, Kawaguchi T, (2013) A novel transcriptional regulator, ClbR, controls the cellobiose- and cellulose-responsive induction of cellulase and xylanase genes regulated by two distinct signaling pathways in Aspergillus aculeatus. Appl Microbiol Biotechnol 97: 2017–2028.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 2017-2028
-
-
Kunitake, E.1
Tani, S.2
Sumitani, J.3
Kawaguchi, T.4
-
14
-
-
0035968258
-
ACEII, a novel transcriptional activator involved in regulation of cellulase and xylanase genes of Trichoderma reesei
-
Aro N, Saloheimo A, Ilmen M, Penttila M, (2001) ACEII, a novel transcriptional activator involved in regulation of cellulase and xylanase genes of Trichoderma reesei. J Biol Chem 276: 24309–24314.
-
(2001)
J Biol Chem
, vol.276
, pp. 24309-24314
-
-
Aro, N.1
Saloheimo, A.2
Ilmen, M.3
Penttila, M.4
-
15
-
-
84860367312
-
A new Zn(II)(2)Cys(6)-type transcription factor BglR regulates beta-glucosidase expression in Trichoderma reesei
-
Nitta M, Furukawa T, Shida Y, Mori K, Kuhara S, et al. (2012) A new Zn(II)(2)Cys(6)-type transcription factor BglR regulates beta-glucosidase expression in Trichoderma reesei. Fungal Genet Biol 49: 388–397.
-
(2012)
Fungal Genet Biol
, vol.49
, pp. 388-397
-
-
Nitta, M.1
Furukawa, T.2
Shida, Y.3
Mori, K.4
Kuhara, S.5
-
16
-
-
0030944352
-
Regulation of cellulase gene expression in the filamentous fungus Trichoderma reesei
-
Ilmen M, Saloheimo A, Onnela ML, Penttila ME, (1997) Regulation of cellulase gene expression in the filamentous fungus Trichoderma reesei. Appl Environ Microbiol 63: 1298–1306.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 1298-1306
-
-
Ilmen, M.1
Saloheimo, A.2
Onnela, M.L.3
Penttila, M.E.4
-
17
-
-
23744496272
-
Transcriptional regulation of plant cell wall degradation by filamentous fungi
-
Aro N, Pakula T, Penttila M, (2005) Transcriptional regulation of plant cell wall degradation by filamentous fungi. FEMS Microbiol Rev 29: 719–739.
-
(2005)
FEMS Microbiol Rev
, vol.29
, pp. 719-739
-
-
Aro, N.1
Pakula, T.2
Penttila, M.3
-
18
-
-
0032758304
-
CreA modulates the XlnR-induced expression on xylose of Aspergillus niger genes involved in xylan degradation
-
de Vries RP, Visser J, de Graaff LH, (1999) CreA modulates the XlnR-induced expression on xylose of Aspergillus niger genes involved in xylan degradation. Res Microbiol 150: 281–285.
-
(1999)
Res Microbiol
, vol.150
, pp. 281-285
-
-
de Vries, R.P.1
Visser, J.2
de Graaff, L.H.3
-
19
-
-
0032922096
-
Carbon catabolite repression of the Aspergillus nidulans xlnA gene
-
Orejas M, MacCabe AP, Perez Gonzalez JA, Kumar S, Ramon D, (1999) Carbon catabolite repression of the Aspergillus nidulans xlnA gene. Mol Microbiol 31: 177–184.
-
(1999)
Mol Microbiol
, vol.31
, pp. 177-184
-
-
Orejas, M.1
MacCabe, A.P.2
Perez Gonzalez, J.A.3
Kumar, S.4
Ramon, D.5
-
20
-
-
0035110793
-
The wide-domain carbon catabolite repressor CreA indirectly controls expression of the Aspergillus nidulans xlnB gene, encoding the acidic endo-beta-(1,4)-xylanase X(24)
-
Orejas M, MacCabe AP, Perez-Gonzalez JA, Kumar S, Ramon D, (2001) The wide-domain carbon catabolite repressor CreA indirectly controls expression of the Aspergillus nidulans xlnB gene, encoding the acidic endo-beta-(1,4)-xylanase X(24). J Bacteriol 183: 1517–1523.
-
(2001)
J Bacteriol
, vol.183
, pp. 1517-1523
-
-
Orejas, M.1
MacCabe, A.P.2
Perez-Gonzalez, J.A.3
Kumar, S.4
Ramon, D.5
-
21
-
-
0016606396
-
Carbon catabolite repression in Aspergillos nidulans
-
Bailey C, Arst HN, Jr (1975) Carbon catabolite repression in Aspergillos nidulans. Eur J Biochem 51: 573–577.
-
(1975)
Eur J Biochem
, vol.51
, pp. 573-577
-
-
Bailey, C.1
Arst, H.N.2
-
22
-
-
0031214324
-
Null alleles of creA, the regulator of carbon catabolite repression in Aspergillus nidulans
-
Shroff RA, O'Connor SM, Hynes MJ, Lockington RA, Kelly JM, (1997) Null alleles of creA, the regulator of carbon catabolite repression in Aspergillus nidulans. Fungal Genet Biol 22: 28–38.
-
(1997)
Fungal Genet Biol
, vol.22
, pp. 28-38
-
-
Shroff, R.A.1
O'Connor, S.M.2
Hynes, M.J.3
Lockington, R.A.4
Kelly, J.M.5
-
23
-
-
0028844656
-
Cre1, the carbon catabolite repressor protein from Trichoderma reesei
-
Strauss J, Mach RL, Zeilinger S, Hartler G, Stoffler G, et al. (1995) Cre1, the carbon catabolite repressor protein from Trichoderma reesei. FEBS Lett 376: 103–107.
-
(1995)
FEBS Lett
, vol.376
, pp. 103-107
-
-
Strauss, J.1
Mach, R.L.2
Zeilinger, S.3
Hartler, G.4
Stoffler, G.5
-
24
-
-
0030589484
-
Analysis of Cre1 binding sites in the Trichoderma reesei cbh1 upstream region
-
Takashima S, Iikura H, Nakamura A, Masaki H, Uozumi T, (1996) Analysis of Cre1 binding sites in the Trichoderma reesei cbh1 upstream region. FEMS Microbiol Lett 145: 361–366.
-
(1996)
FEMS Microbiol Lett
, vol.145
, pp. 361-366
-
-
Takashima, S.1
Iikura, H.2
Nakamura, A.3
Masaki, H.4
Uozumi, T.5
-
25
-
-
0030036051
-
The glucose repressor gene cre1 of Trichoderma: isolation and expression of a full-length and a truncated mutant form
-
Ilmen M, Thrane C, Penttila M, (1996) The glucose repressor gene cre1 of Trichoderma: isolation and expression of a full-length and a truncated mutant form. Mol Gen Genet 251: 451–460.
-
(1996)
Mol Gen Genet
, vol.251
, pp. 451-460
-
-
Ilmen, M.1
Thrane, C.2
Penttila, M.3
-
26
-
-
80053321725
-
Identification of the CRE-1 cellulolytic regulon in Neurospora crassa
-
Sun J, Glass NL, (2011) Identification of the CRE-1 cellulolytic regulon in Neurospora crassa. PLoS One 6: e25654.
-
(2011)
PLoS One
, vol.6
, pp. 25654
-
-
Sun, J.1
Glass, N.L.2
-
27
-
-
39149140711
-
Carbon source affects PKA-dependent polarity of Neurospora crassa in a CRE-1-dependent and independent manner
-
Ziv C, Gorovits R, Yarden O, (2008) Carbon source affects PKA-dependent polarity of Neurospora crassa in a CRE-1-dependent and independent manner. Fungal Genet Biol 45: 103–116.
-
(2008)
Fungal Genet Biol
, vol.45
, pp. 103-116
-
-
Ziv, C.1
Gorovits, R.2
Yarden, O.3
-
28
-
-
43049168768
-
CreA mediates repression of the regulatory gene xlnR which controls the production of xylanolytic enzymes in Aspergillus nidulans
-
Tamayo EN, Villanueva A, Hasper AA, de Graaff LH, Ramon D, et al. (2008) CreA mediates repression of the regulatory gene xlnR which controls the production of xylanolytic enzymes in Aspergillus nidulans. Fungal Genet Biol 45: 984–993.
-
(2008)
Fungal Genet Biol
, vol.45
, pp. 984-993
-
-
Tamayo, E.N.1
Villanueva, A.2
Hasper, A.A.3
de Graaff, L.H.4
Ramon, D.5
-
29
-
-
0038146953
-
Onset of carbon catabolite repression in Aspergillus nidulans. Parallel involvement of hexokinase and glucokinase in sugar signaling
-
Flipphi M, van de Vondervoort PJ, Ruijter GJ, Visser J, Arst HN, Jret al. (2003) Onset of carbon catabolite repression in Aspergillus nidulans. Parallel involvement of hexokinase and glucokinase in sugar signaling. J Biol Chem 278: 11849–11857.
-
(2003)
J Biol Chem
, vol.278
, pp. 11849-11857
-
-
Flipphi, M.1
van de Vondervoort, P.J.2
Ruijter, G.J.3
Visser, J.4
Arst, H.N.5
-
30
-
-
0033799307
-
The Aspergillus nidulans creC gene involved in carbon catabolite repression encodes a WD40 repeat protein
-
Todd RB, Lockington RA, Kelly JM, (2000) The Aspergillus nidulans creC gene involved in carbon catabolite repression encodes a WD40 repeat protein. Mol Gen Genet 263: 561–570.
-
(2000)
Mol Gen Genet
, vol.263
, pp. 561-570
-
-
Todd, R.B.1
Lockington, R.A.2
Kelly, J.M.3
-
31
-
-
0034942079
-
Carbon catabolite repression in Aspergillus nidulans involves deubiquitination
-
Lockington RA, Kelly JM, (2001) Carbon catabolite repression in Aspergillus nidulans involves deubiquitination. Mol Microbiol 40: 1311–1321.
-
(2001)
Mol Microbiol
, vol.40
, pp. 1311-1321
-
-
Lockington, R.A.1
Kelly, J.M.2
-
32
-
-
0036223215
-
The WD40-repeat protein CreC interacts with and stabilizes the deubiquitinating enzyme CreB in vivo in Aspergillus nidulans
-
Lockington RA, Kelly JM, (2002) The WD40-repeat protein CreC interacts with and stabilizes the deubiquitinating enzyme CreB in vivo in Aspergillus nidulans. Mol Microbiol 43: 1173–1182.
-
(2002)
Mol Microbiol
, vol.43
, pp. 1173-1182
-
-
Lockington, R.A.1
Kelly, J.M.2
-
33
-
-
3843055866
-
A role for creD, a carbon catabolite repression gene from Aspergillus nidulans, in ubiquitination
-
Boase NA, Kelly JM, (2004) A role for creD, a carbon catabolite repression gene from Aspergillus nidulans, in ubiquitination. Mol Microbiol 53: 929–940.
-
(2004)
Mol Microbiol
, vol.53
, pp. 929-940
-
-
Boase, N.A.1
Kelly, J.M.2
-
34
-
-
80655128670
-
Disruption of Trichoderma reesei cre2, encoding an ubiquitin C-terminal hydrolase, results in increased cellulase activity
-
Denton JA, Kelly JM, (2011) Disruption of Trichoderma reesei cre2, encoding an ubiquitin C-terminal hydrolase, results in increased cellulase activity. BMC Biotechnol 11: 103.
-
(2011)
BMC Biotechnol
, vol.11
, pp. 103
-
-
Denton, J.A.1
Kelly, J.M.2
-
35
-
-
84867606420
-
Enhanced cellulase production of Penicillium decumbens by knocking out CreB encoding a deubiquitination enzyme [Chinese]
-
Zhou G, Lu J, Li Z, Li J, Wang M, et al. (2012) Enhanced cellulase production of Penicillium decumbens by knocking out CreB encoding a deubiquitination enzyme [Chinese]. Sheng Wu Gong Cheng Xue Bao 28: 959–972.
-
(2012)
Sheng Wu Gong Cheng Xue Bao
, vol.28
, pp. 959-972
-
-
Zhou, G.1
Lu, J.2
Li, Z.3
Li, J.4
Wang, M.5
-
36
-
-
56349084184
-
Sulphur metabolism and cellulase gene expression are connected processes in the filamentous fungus Hypocrea jecorina (anamorph Trichoderma reesei)
-
Gremel G, Dorrer M, Schmoll M, (2008) Sulphur metabolism and cellulase gene expression are connected processes in the filamentous fungus Hypocrea jecorina (anamorph Trichoderma reesei). BMC Microbiol 8: 174.
-
(2008)
BMC Microbiol
, vol.8
, pp. 174
-
-
Gremel, G.1
Dorrer, M.2
Schmoll, M.3
-
37
-
-
0037226849
-
ACEI of Trichoderma reesei is a repressor of cellulase and xylanase expression
-
Aro N, Ilmen M, Saloheimo A, Penttila M, (2003) ACEI of Trichoderma reesei is a repressor of cellulase and xylanase expression. Appl Environ Microbiol 69: 56–65.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 56-65
-
-
Aro, N.1
Ilmen, M.2
Saloheimo, A.3
Penttila, M.4
-
38
-
-
0031742219
-
Carbon catabolite repression of gene expression and conidiation in Neurospora crassa
-
Ebbole DJ, (1998) Carbon catabolite repression of gene expression and conidiation in Neurospora crassa. Fungal Genetics and Biology 25: 15–21.
-
(1998)
Fungal Genetics and Biology
, vol.25
, pp. 15-21
-
-
Ebbole, D.J.1
-
39
-
-
0030940265
-
rco-3, a gene involved in glucose transport and conidiation in Neurospora crassa
-
Madi L, McBride SA, Bailey LA, Ebbole DJ, (1997) rco-3, a gene involved in glucose transport and conidiation in Neurospora crassa. Genetics 146: 499–508.
-
(1997)
Genetics
, vol.146
, pp. 499-508
-
-
Madi, L.1
McBride, S.A.2
Bailey, L.A.3
Ebbole, D.J.4
-
40
-
-
84879245430
-
Functional characterisation of the non-essential protein kinases and phosphatases regulating Aspergillus nidulans hydrolytic enzyme production
-
Brown NA, de Gouvea PF, Krohn NG, Savoldi M, Goldman GH, (2013) Functional characterisation of the non-essential protein kinases and phosphatases regulating Aspergillus nidulans hydrolytic enzyme production. Biotechnol Biofuels 6: 91.
-
(2013)
Biotechnol Biofuels
, vol.6
, pp. 91
-
-
Brown, N.A.1
de Gouvea, P.F.2
Krohn, N.G.3
Savoldi, M.4
Goldman, G.H.5
-
41
-
-
84863636068
-
Principles of carbon catabolite repression in the rice blast fungus: Tps1, Nmr1-3, and a MATE-family pump regulate glucose metabolism during infection
-
Fernandez J, Wright JD, Hartline D, Quispe CF, Madayiputhiya N, et al. (2012) Principles of carbon catabolite repression in the rice blast fungus: Tps1, Nmr1-3, and a MATE-family pump regulate glucose metabolism during infection. PLoS Genet 8: e1002673.
-
(2012)
PLoS Genet
, vol.8
, pp. 1002673
-
-
Fernandez, J.1
Wright, J.D.2
Hartline, D.3
Quispe, C.F.4
Madayiputhiya, N.5
-
42
-
-
0036255812
-
Timeline: Neurospora: a model of model microbes
-
Davis RH, Perkins DD, (2002) Timeline: Neurospora: a model of model microbes. Nat Rev Genet 3: 397–403.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 397-403
-
-
Davis, R.H.1
Perkins, D.D.2
-
44
-
-
76049107428
-
Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa
-
Tian C, Beeson WT, Iavarone AT, Sun J, Marletta MA, et al. (2009) Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa. Proc Natl Acad Sci U S A 106: 22157–22162.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 22157-22162
-
-
Tian, C.1
Beeson, W.T.2
Iavarone, A.T.3
Sun, J.4
Marletta, M.A.5
-
45
-
-
80052450370
-
Quantitative proteomic approach for cellulose degradation by Neurospora crassa
-
Phillips CM, Iavarone AT, Marletta MA, (2011) Quantitative proteomic approach for cellulose degradation by Neurospora crassa. J Proteome Res 10: 4177–4185.
-
(2011)
J Proteome Res
, vol.10
, pp. 4177-4185
-
-
Phillips, C.M.1
Iavarone, A.T.2
Marletta, M.A.3
-
46
-
-
33745924142
-
A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors
-
Colot HV, Park G, Turner GE, Ringelberg C, Crew CM, et al. (2006) A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors. Proc Natl Acad Sci U S A 103: 10352–10357.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 10352-10357
-
-
Colot, H.V.1
Park, G.2
Turner, G.E.3
Ringelberg, C.4
Crew, C.M.5
-
47
-
-
0036743339
-
Identification of vib-1, a locus involved in vegetative incompatibility mediated by het-c in Neurospora crassa
-
Xiang Q, Glass NL, (2002) Identification of vib-1, a locus involved in vegetative incompatibility mediated by het-c in Neurospora crassa. Genetics 162: 89–101.
-
(2002)
Genetics
, vol.162
, pp. 89-101
-
-
Xiang, Q.1
Glass, N.L.2
-
48
-
-
33845655641
-
VIB-1 is required for expression of genes necessary for programmed cell death in Neurospora crassa
-
Dementhon K, Iyer G, Glass NL, (2006) VIB-1 is required for expression of genes necessary for programmed cell death in Neurospora crassa. Eukaryot Cell 5: 2161–2173.
-
(2006)
Eukaryot Cell
, vol.5
, pp. 2161-2173
-
-
Dementhon, K.1
Iyer, G.2
Glass, N.L.3
-
49
-
-
84867185148
-
Diversification of a protein kinase cascade: IME-2 is involved in nonself recognition and programmed cell death in Neurospora crassa
-
Hutchison EA, Bueche JA, Glass NL, (2012) Diversification of a protein kinase cascade: IME-2 is involved in nonself recognition and programmed cell death in Neurospora crassa. Genetics 192: 467–482.
-
(2012)
Genetics
, vol.192
, pp. 467-482
-
-
Hutchison, E.A.1
Bueche, J.A.2
Glass, N.L.3
-
50
-
-
0041472360
-
The Fungal Genetics Stock Center: from molds to molecules
-
McCluskey K, (2003) The Fungal Genetics Stock Center: from molds to molecules. Adv Appl Microbiol 52: 245–262.
-
(2003)
Adv Appl Microbiol
, vol.52
, pp. 245-262
-
-
McCluskey, K.1
-
51
-
-
84891763855
-
The carbohydrate-active enzymes database (CAZy) in 2013
-
Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, Henrissat B, (2013) The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res 42: D490–495.
-
(2013)
Nucleic Acids Res
, vol.42
, pp. 490-495
-
-
Lombard, V.1
Golaconda Ramulu, H.2
Drula, E.3
Coutinho, P.M.4
Henrissat, B.5
-
52
-
-
84884514833
-
Plant cell wall deconstruction by ascomycete fungi
-
Glass NL, Schmoll M, Cate JH, Coradetti S, (2013) Plant cell wall deconstruction by ascomycete fungi. Annu Rev Microbiol 67: 477–498.
-
(2013)
Annu Rev Microbiol
, vol.67
, pp. 477-498
-
-
Glass, N.L.1
Schmoll, M.2
Cate, J.H.3
Coradetti, S.4
-
53
-
-
77957347059
-
Cellodextrin transport in yeast for improved biofuel production
-
Galazka JM, Tian C, Beeson WT, Martinez B, Glass NL, et al. (2010) Cellodextrin transport in yeast for improved biofuel production. Science 330: 84–86.
-
(2010)
Science
, vol.330
, pp. 84-86
-
-
Galazka, J.M.1
Tian, C.2
Beeson, W.T.3
Martinez, B.4
Glass, N.L.5
-
54
-
-
84908550191
-
The proteome and phosphoproteome of Neurospora crassa in response to cellulose, sucrose and carbon starvation
-
Xiong Y, Coradetti ST, Li X, Gritsenko MA, Clauss T, et al. (2014) The proteome and phosphoproteome of Neurospora crassa in response to cellulose, sucrose and carbon starvation. Fungal Genet Biol (in press).
-
(2014)
Fungal Genet Biol
-
-
Xiong, Y.1
Coradetti, S.T.2
Li, X.3
Gritsenko, M.A.4
Clauss, T.5
-
56
-
-
0021136405
-
Characterization of the secreted cellulases of Trichoderma reesei wild type and mutants during controlled fermentations
-
Sheirneiss G, Montenecourt BS, (1984) Characterization of the secreted cellulases of Trichoderma reesei wild type and mutants during controlled fermentations. Appl Microbiol Biotechnol 20: 46–53.
-
(1984)
Appl Microbiol Biotechnol
, vol.20
, pp. 46-53
-
-
Sheirneiss, G.1
Montenecourt, B.S.2
-
57
-
-
0024568866
-
Deoxyglucose-resistant mutants of Neurospora crassa: isolation, mapping, and biochemical characterization
-
Allen KE, McNally MT, Lowendorf HS, Slayman CW, Free SJ, (1989) Deoxyglucose-resistant mutants of Neurospora crassa: isolation, mapping, and biochemical characterization. J Bacteriol 171: 53–58.
-
(1989)
J Bacteriol
, vol.171
, pp. 53-58
-
-
Allen, K.E.1
McNally, M.T.2
Lowendorf, H.S.3
Slayman, C.W.4
Free, S.J.5
-
58
-
-
8644278216
-
Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa
-
Xie X, Wilkinson HH, Correa A, Lewis ZA, Bell-Pedersen D, et al. (2004) Transcriptional response to glucose starvation and functional analysis of a glucose transporter of Neurospora crassa. Fungal Genet Biol 41: 1104–1119.
-
(2004)
Fungal Genet Biol
, vol.41
, pp. 1104-1119
-
-
Xie, X.1
Wilkinson, H.H.2
Correa, A.3
Lewis, Z.A.4
Bell-Pedersen, D.5
-
59
-
-
84866145069
-
Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing
-
Delmas S, Pullan ST, Gaddipati S, Kokolski M, Malla S, et al. (2012) Uncovering the genome-wide transcriptional responses of the filamentous fungus Aspergillus niger to lignocellulose using RNA sequencing. PLoS Genet 8: e1002875.
-
(2012)
PLoS Genet
, vol.8
, pp. 1002875
-
-
Delmas, S.1
Pullan, S.T.2
Gaddipati, S.3
Kokolski, M.4
Malla, S.5
-
61
-
-
0031810672
-
Yeast carbon catabolite repression
-
Gancedo JM, (1998) Yeast carbon catabolite repression. Microbiol Mol Biol Rev 62: 334–361.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 334-361
-
-
Gancedo, J.M.1
-
62
-
-
79956259724
-
The effects of disruption of phosphoglucose isomerase gene on carbon utilisation and cellulase production in Trichoderma reesei Rut-C30
-
Limon MC, Pakula T, Saloheimo M, Penttila M, (2011) The effects of disruption of phosphoglucose isomerase gene on carbon utilisation and cellulase production in Trichoderma reesei Rut-C30. Microbial Cell Factories 10: 40.
-
(2011)
Microbial Cell Factories
, vol.10
, pp. 40
-
-
Limon, M.C.1
Pakula, T.2
Saloheimo, M.3
Penttila, M.4
-
63
-
-
84876377014
-
Single nucleotide polymorphism analysis of a Trichoderma reesei hyper-cellulolytic mutant developed in Japan
-
Porciuncula Jde O, Furukawa T, Mori K, Shida Y, Hirakawa H, et al. (2013) Single nucleotide polymorphism analysis of a Trichoderma reesei hyper-cellulolytic mutant developed in Japan. Biosci Biotechnol Biochem 77: 534–543.
-
(2013)
Biosci Biotechnol Biochem
, vol.77
, pp. 534-543
-
-
Porciuncula Jde, O.1
Furukawa, T.2
Mori, K.3
Shida, Y.4
Hirakawa, H.5
-
64
-
-
70349482673
-
Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
-
Le Crom S, Schackwitz W, Pennacchio L, Magnuson JK, Culley DE, et al. (2009) Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing. Proc Natl Acad Sci U S A 106: 16151–16156.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 16151-16156
-
-
Le Crom, S.1
Schackwitz, W.2
Pennacchio, L.3
Magnuson, J.K.4
Culley, D.E.5
-
65
-
-
77954676864
-
Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties
-
Vitikainen M, Arvas M, Pakula T, Oja M, Penttila M, et al. (2010) Array comparative genomic hybridization analysis of Trichoderma reesei strains with enhanced cellulase production properties. BMC Genomics 11: 441.
-
(2010)
BMC Genomics
, vol.11
, pp. 441
-
-
Vitikainen, M.1
Arvas, M.2
Pakula, T.3
Oja, M.4
Penttila, M.5
-
66
-
-
0029940951
-
Mutations affecting extracellular protease production in the filamentous fungus Aspergillus nidulans
-
Katz ME, Flynn PK, vanKuyk PA, Cheetham BF, (1996) Mutations affecting extracellular protease production in the filamentous fungus Aspergillus nidulans. Mol Gen Genet 250: 715–724.
-
(1996)
Mol Gen Genet
, vol.250
, pp. 715-724
-
-
Katz, M.E.1
Flynn, P.K.2
vanKuyk, P.A.3
Cheetham, B.F.4
-
67
-
-
47249132823
-
The interaction of induction, repression and starvation in the regulation of extracellular proteases in Aspergillus nidulans: evidence for a role for CreA in the response to carbon starvation
-
Katz ME, Bernardo SM, Cheetham BF, (2008) The interaction of induction, repression and starvation in the regulation of extracellular proteases in Aspergillus nidulans: evidence for a role for CreA in the response to carbon starvation. Curr Genet 54: 47–55.
-
(2008)
Curr Genet
, vol.54
, pp. 47-55
-
-
Katz, M.E.1
Bernardo, S.M.2
Cheetham, B.F.3
-
68
-
-
33644828993
-
The Aspergillus nidulans xprG (phoG) gene encodes a putative transcriptional activator involved in the response to nutrient limitation
-
Katz ME, Gray KA, Cheetham BF, (2006) The Aspergillus nidulans xprG (phoG) gene encodes a putative transcriptional activator involved in the response to nutrient limitation. Fungal Genet Biol 43: 190–199.
-
(2006)
Fungal Genet Biol
, vol.43
, pp. 190-199
-
-
Katz, M.E.1
Gray, K.A.2
Cheetham, B.F.3
-
69
-
-
34247329338
-
Characterization of regulatory non-catalytic hexokinases in Aspergillus nidulans
-
Bernardo SM, Gray KA, Todd RB, Cheetham BF, Katz ME, (2007) Characterization of regulatory non-catalytic hexokinases in Aspergillus nidulans. Mol Genet Genomics 277: 519–532.
-
(2007)
Mol Genet Genomics
, vol.277
, pp. 519-532
-
-
Bernardo, S.M.1
Gray, K.A.2
Todd, R.B.3
Cheetham, B.F.4
Katz, M.E.5
-
70
-
-
78751607188
-
Meiotic regulators Ndt80 and ime2 have different roles in Saccharomyces and Neurospora
-
Hutchison EA, Glass NL, (2010) Meiotic regulators Ndt80 and ime2 have different roles in Saccharomyces and Neurospora. Genetics 185: 1271–1282.
-
(2010)
Genetics
, vol.185
, pp. 1271-1282
-
-
Hutchison, E.A.1
Glass, N.L.2
-
71
-
-
0002113552
-
Nitrogen and carbon starvation regulate conidia and protoperithecia formation in Neurospora crassa grown on solid media
-
Ricci M, Krappmann D, Russo VEA, (1991) Nitrogen and carbon starvation regulate conidia and protoperithecia formation in Neurospora crassa grown on solid media. Fungal Genet Newslett 38: 87–88.
-
(1991)
Fungal Genet Newslett
, vol.38
, pp. 87-88
-
-
Ricci, M.1
Krappmann, D.2
Russo, V.E.A.3
-
72
-
-
8644249912
-
The control of mating type heterokaryon incompatibility by vib-1, a locus involved in het-c heterokaryon incompatibility in Neurospora crassa
-
Xiang Q, Glass NL, (2004) The control of mating type heterokaryon incompatibility by vib-1, a locus involved in het-c heterokaryon incompatibility in Neurospora crassa. Fungal Genet Biol 41: 1063–1076.
-
(2004)
Fungal Genet Biol
, vol.41
, pp. 1063-1076
-
-
Xiang, Q.1
Glass, N.L.2
-
73
-
-
85082442488
-
A p53-like transcription factor similar to Ndt80 controls the response to nutrient stress in the filamentous fungus, Aspergillus nidulans
-
Katz ME, Braunberger K, Yi G, Cooper S, Nonhebel HM, et al. (2013) A p53-like transcription factor similar to Ndt80 controls the response to nutrient stress in the filamentous fungus, Aspergillus nidulans. F1000Res 2: 72.
-
(2013)
F1000Res
, vol.2
, pp. 72
-
-
Katz, M.E.1
Braunberger, K.2
Yi, G.3
Cooper, S.4
Nonhebel, H.M.5
-
74
-
-
0036217404
-
The autolysis of industrial filamentous fungi
-
White S, McIntyre M, Berry DR, McNeil B, (2002) The autolysis of industrial filamentous fungi. Crit Rev Biotechnol 22: 1–14.
-
(2002)
Crit Rev Biotechnol
, vol.22
, pp. 1-14
-
-
White, S.1
McIntyre, M.2
Berry, D.R.3
McNeil, B.4
-
75
-
-
80053036165
-
The role of p53 in metabolic regulation
-
Puzio-Kuter AM, (2011) The role of p53 in metabolic regulation. Genes Cancer 2: 385–391.
-
(2011)
Genes Cancer
, vol.2
, pp. 385-391
-
-
Puzio-Kuter, A.M.1
-
76
-
-
79955751752
-
Metabolic regulation by p53
-
Maddocks OD, Vousden KH, (2011) Metabolic regulation by p53. J Mol Med 89: 237–245.
-
(2011)
J Mol Med
, vol.89
, pp. 237-245
-
-
Maddocks, O.D.1
Vousden, K.H.2
-
77
-
-
0002468736
-
Gene replacements at the his-3 locus of Neurospora crassa
-
Aramayo R, Metzenberg RL, (1996) Gene replacements at the his-3 locus of Neurospora crassa. Fungal Genet Newsl 43: 9–13.
-
(1996)
Fungal Genet Newsl
, vol.43
, pp. 9-13
-
-
Aramayo, R.1
Metzenberg, R.L.2
-
78
-
-
0001963674
-
A convenient growth medium for Neurospora
-
Vogel H, (1956) A convenient growth medium for Neurospora. Microb Genet Bull 13: 2–43.
-
(1956)
Microb Genet Bull
, vol.13
, pp. 2-43
-
-
Vogel, H.1
-
79
-
-
0001355008
-
Neurospora V. A synthetic medium favoring sexual reproduction
-
Westergaard M, Mitchell HK, (1947) Neurospora V. A synthetic medium favoring sexual reproduction. Am J Botany 34: 573–577.
-
(1947)
Am J Botany
, vol.34
, pp. 573-577
-
-
Westergaard, M.1
Mitchell, H.K.2
-
80
-
-
77956995235
-
Genetic and microbiological research techniques for Neurospora crassa
-
Davis RH, Serres FJd, (1970) Genetic and microbiological research techniques for Neurospora crassa. Meth Enzymol 17: 79–143.
-
(1970)
Meth Enzymol
, vol.17
, pp. 79-143
-
-
Davis, R.H.1
Serres, F.J.2
-
81
-
-
0037464589
-
The genome sequence of the filamentous fungus Neurospora crassa
-
Galagan JE, Calvo SE, Borkovich KA, Selker EU, Read ND, et al. (2003) The genome sequence of the filamentous fungus Neurospora crassa. Nature 422: 859–868.
-
(2003)
Nature
, vol.422
, pp. 859-868
-
-
Galagan, J.E.1
Calvo, S.E.2
Borkovich, K.A.3
Selker, E.U.4
Read, N.D.5
-
82
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead B, Trapnell C, Pop M, Salzberg SL, (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25.
-
(2009)
Genome Biol
, vol.10
, pp. 25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
83
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
-
Trapnell C, Roberts A, Goff L, Pertea G, Kim D, et al. (2012) Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat Protoc 7: 562–578.
-
(2012)
Nat Protoc
, vol.7
, pp. 562-578
-
-
Trapnell, C.1
Roberts, A.2
Goff, L.3
Pertea, G.4
Kim, D.5
-
84
-
-
3142756502
-
Open source clustering software
-
de Hoon MJ, Imoto S, Nolan J, Miyano S, (2004) Open source clustering software. Bioinformatics 20: 1453–1454.
-
(2004)
Bioinformatics
, vol.20
, pp. 1453-1454
-
-
de Hoon, M.J.1
Imoto, S.2
Nolan, J.3
Miyano, S.4
-
85
-
-
9144257282
-
The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes
-
Ruepp A, Zollner A, Maier D, Albermann K, Hani J, et al. (2004) The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes. Nucleic Acids Res 32: 5539–5545.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5539-5545
-
-
Ruepp, A.1
Zollner, A.2
Maier, D.3
Albermann, K.4
Hani, J.5
-
86
-
-
77953484190
-
Single-step affinity purification for Fungal Proteomics
-
Liu H, Osmani AH, Ukil L, Son S, Markossian S, et al. (2010) Single-step affinity purification for Fungal Proteomics. Eukayot Cell 9: 831–833.
-
(2010)
Eukayot Cell
, vol.9
, pp. 831-833
-
-
Liu, H.1
Osmani, A.H.2
Ukil, L.3
Son, S.4
Markossian, S.5
|