-
1
-
-
84872589843
-
Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
-
Shih PM, Wu D, Latifi A, Axen SD, Fewer DP, Talla E, Calteau A, Cai F, Tandeau de Marsac N, Rippka R, Herdman M, Sivonen K, Coursin T, Laurent T, Goodwin L, Nolan M, Davenport KW, Han CS, Rubin EM, Eisen JA, Woyke T, Gugger M, Kerfeld CA: Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing. Proc Natl Acad Sci U S A 2013, 110:1053-1058. 10.1073/pnas.1217107110.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 1053-1058
-
-
Shih, P.M.1
Wu, D.2
Latifi, A.3
Axen, S.D.4
Fewer, D.P.5
Talla, E.6
Calteau, A.7
Cai, F.8
Tandeau de Marsac, N.9
Rippka, R.10
Herdman, M.11
Sivonen, K.12
Coursin, T.13
Laurent, T.14
Goodwin, L.15
Nolan, M.16
Davenport, K.W.17
Han, C.S.18
Rubin, E.M.19
Eisen, J.A.20
Woyke, T.21
Gugger, M.22
Kerfeld, C.A.23
more..
-
2
-
-
0026614460
-
The antiquity of oxygenic photosynthesis: evidence from stromatolites in sulfate-deficient Archaean lakes
-
Buick R: The antiquity of oxygenic photosynthesis: evidence from stromatolites in sulfate-deficient Archaean lakes. Science 1992, 255:74-77. 10.1126/science.11536492.
-
(1992)
Science
, vol.255
, pp. 74-77
-
-
Buick, R.1
-
3
-
-
84870854383
-
Cyanobacterial toxins: biosynthetic routes and evolutionary roots
-
Dittmann E, Fewer DP, Neilan BA: Cyanobacterial toxins: biosynthetic routes and evolutionary roots. FEMS Microbiol Rev 2013, 37:23-43. 10.1111/j.1574-6976.2012.12000.x.
-
(2013)
FEMS Microbiol Rev
, vol.37
, pp. 23-43
-
-
Dittmann, E.1
Fewer, D.P.2
Neilan, B.A.3
-
4
-
-
0030484901
-
Bioactive compounds produced by cyanobacteria
-
Namikoshi M, Rinehart K: Bioactive compounds produced by cyanobacteria. J Ind Microbiol 1996, 17:373-384. 10.1007/BF01574768.
-
(1996)
J Ind Microbiol
, vol.17
, pp. 373-384
-
-
Namikoshi, M.1
Rinehart, K.2
-
5
-
-
0035851234
-
Marine cyanobacteria - a prolific source of natural products
-
Burja A, Banaigs B, Abou-Mansour E, Burgess J, Wright P: Marine cyanobacteria - a prolific source of natural products. Tetrahedron 2001, 57:9347-9377. 10.1016/S0040-4020(01)00931-0.
-
(2001)
Tetrahedron
, vol.57
, pp. 9347-9377
-
-
Burja, A.1
Banaigs, B.2
Abou-Mansour, E.3
Burgess, J.4
Wright, P.5
-
6
-
-
33744965454
-
Cyanobacterial peptides-nature's own nonribosomal combinatorial biosynthesis
-
Welker M, von Döhren H: Cyanobacterial peptides-nature's own nonribosomal combinatorial biosynthesis. FEMS Microbiol Rev 2006, 30:530-563. 10.1111/j.1574-6976.2006.00022.x.
-
(2006)
FEMS Microbiol Rev
, vol.30
, pp. 530-563
-
-
Welker, M.1
von Döhren, H.2
-
7
-
-
38949176836
-
Characterization of the gene cluster responsible for cylindrospermopsin biosynthesis
-
Mihali TK, Kellmann R, Muenchhoff J, Barrow KD, Neilan BA: Characterization of the gene cluster responsible for cylindrospermopsin biosynthesis. Appl Environ Microbiol 2008, 74:716-722. 10.1128/AEM.01988-07.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 716-722
-
-
Mihali, T.K.1
Kellmann, R.2
Muenchhoff, J.3
Barrow, K.D.4
Neilan, B.A.5
-
8
-
-
67650519382
-
Evidence that biosynthesis of the neurotoxic alkaloids anatoxin-a and homoanatoxin-a in the cyanobacterium Oscillatoria PCC 6506 occurs on a modular polyketide synthase initiated by L-proline
-
Mejean A, Mann S, Maldiney T, Vassiliadis G, Lequin O, Ploux O: Evidence that biosynthesis of the neurotoxic alkaloids anatoxin-a and homoanatoxin-a in the cyanobacterium Oscillatoria PCC 6506 occurs on a modular polyketide synthase initiated by L-proline. J Am Chem Soc 2009, 131:7512-7513. 10.1021/ja9024353.
-
(2009)
J Am Chem Soc
, vol.131
, pp. 7512-7513
-
-
Mejean, A.1
Mann, S.2
Maldiney, T.3
Vassiliadis, G.4
Lequin, O.5
Ploux, O.6
-
9
-
-
0033780306
-
Structural organization of microcystin biosynthesis in Microcystis aeruginosa PCC7806: an integrated peptide-polyketide synthetase system
-
Tillett D, Dittmann E, Erhard M, von Döhren H, Börner T, Neilan BA: Structural organization of microcystin biosynthesis in Microcystis aeruginosa PCC7806: an integrated peptide-polyketide synthetase system. Chem Biol 2000, 7:753-764. 10.1016/S1074-5521(00)00021-1.
-
(2000)
Chem Biol
, vol.7
, pp. 753-764
-
-
Tillett, D.1
Dittmann, E.2
Erhard, M.3
von Döhren, H.4
Börner, T.5
Neilan, B.A.6
-
10
-
-
46949108154
-
Biosynthetic intermediate analysis and functional homology reveal a saxitoxin gene cluster in cyanobacteria
-
Kellmann R, Mihali TK, Jeon YJ, Pickford R, Pomati F, Neilan BA: Biosynthetic intermediate analysis and functional homology reveal a saxitoxin gene cluster in cyanobacteria. Appl Environ Microbiol 2008, 74:4044-4053. 10.1128/AEM.00353-08.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4044-4053
-
-
Kellmann, R.1
Mihali, T.K.2
Jeon, Y.J.3
Pickford, R.4
Pomati, F.5
Neilan, B.A.6
-
11
-
-
4344645019
-
Biosynthetic pathway and gene cluster analysis of curacin A, an antitubulin natural product from the tropical marine cyanobacterium Lyngbya majuscula
-
Chang Z, Sitachitta N, Rossi JV, Roberts MA, Flatt PM, Jia J, Sherman DH, Gerwick WH: Biosynthetic pathway and gene cluster analysis of curacin A, an antitubulin natural product from the tropical marine cyanobacterium Lyngbya majuscula. J Nat Prod 2004, 67:1356-1367. 10.1021/np0499261.
-
(2004)
J Nat Prod
, vol.67
, pp. 1356-1367
-
-
Chang, Z.1
Sitachitta, N.2
Rossi, J.V.3
Roberts, M.A.4
Flatt, P.M.5
Jia, J.6
Sherman, D.H.7
Gerwick, W.H.8
-
12
-
-
3042551455
-
Structure and biosynthesis of the jamaicamides, new mixed polyketide-peptide neurotoxins from the marine cyanobacterium Lyngbya majuscula
-
Edwards DJ, Marquez BL, Nogle LM, McPhail K, Goeger DE, Roberts MA, Gerwick WH: Structure and biosynthesis of the jamaicamides, new mixed polyketide-peptide neurotoxins from the marine cyanobacterium Lyngbya majuscula. Chem Biol 2004, 11:817-833. 10.1016/j.chembiol.2004.03.030.
-
(2004)
Chem Biol
, vol.11
, pp. 817-833
-
-
Edwards, D.J.1
Marquez, B.L.2
Nogle, L.M.3
McPhail, K.4
Goeger, D.E.5
Roberts, M.A.6
Gerwick, W.H.7
-
13
-
-
79957668932
-
Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula
-
Jones AC, Monroe EA, Podell S, Hess WR, Klages S, Esquenazi E, Niessen S, Hoover H, Rothmann M, Lasken RS, Yates JR 3rd, Reinhardt R, Kube M, Burkart MD, Allen EE, Dorrestein PC, Gerwick WH, Gerwick L: Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula. Proc Natl Acad Sci U S A 2011, 108:8815-8820. 10.1073/pnas.1101137108.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 8815-8820
-
-
Jones, A.C.1
Monroe, E.A.2
Podell, S.3
Hess, W.R.4
Klages, S.5
Esquenazi, E.6
Niessen, S.7
Hoover, H.8
Rothmann, M.9
Lasken, R.S.10
Yates, J.R.11
Reinhardt, R.12
Kube, M.13
Burkart, M.D.14
Allen, E.E.15
Dorrestein, P.C.16
Gerwick, W.H.17
Gerwick, L.18
-
14
-
-
65449131192
-
Metamorphic enzyme assembly in polyketide diversification
-
Gu L, Wang B, Kulkarni A, Geders T, Grindberg R, Gerwick L, Håkansson K, Wipf P, Smith J, Gerwick W, Sherman D: Metamorphic enzyme assembly in polyketide diversification. Nature 2009, 459:731-735. 10.1038/nature07870.
-
(2009)
Nature
, vol.459
, pp. 731-735
-
-
Gu, L.1
Wang, B.2
Kulkarni, A.3
Geders, T.4
Grindberg, R.5
Gerwick, L.6
Håkansson, K.7
Wipf, P.8
Smith, J.9
Gerwick, W.10
Sherman, D.11
-
15
-
-
0347635514
-
Phylogenetic evidence for the early evolution of microcystin synthesis
-
Rantala A, Fewer DP, Hisbergues M, Rouhiainen L, Vaitomaa J, Börner T, Sivonen K: Phylogenetic evidence for the early evolution of microcystin synthesis. Proc Natl Acad Sci U S A 2004, 101:568-573. 10.1073/pnas.0304489101.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 568-573
-
-
Rantala, A.1
Fewer, D.P.2
Hisbergues, M.3
Rouhiainen, L.4
Vaitomaa, J.5
Börner, T.6
Sivonen, K.7
-
16
-
-
66749091566
-
Origin of saxitoxin biosynthetic genes in Cyanobacteria
-
Moustafa A, Loram JE, Hackett JD, Anderson DM, Plumley FG, Bhattacharya D: Origin of saxitoxin biosynthetic genes in Cyanobacteria. PLoS One 2009, 4:e578.
-
(2009)
PLoS One
, vol.4
, pp. e578
-
-
Moustafa, A.1
Loram, J.E.2
Hackett, J.D.3
Anderson, D.M.4
Plumley, F.G.5
Bhattacharya, D.6
-
17
-
-
21244455575
-
Type I polyketide synthases may have evolved through horizontal gene transfer
-
Ginolhac A, Jarrin C, Robe P, Perriere G, Vogel TM, Simonet P, Nalin R: Type I polyketide synthases may have evolved through horizontal gene transfer. J Mol Evol 2005, 60:716-725. 10.1007/s00239-004-0161-1.
-
(2005)
J Mol Evol
, vol.60
, pp. 716-725
-
-
Ginolhac, A.1
Jarrin, C.2
Robe, P.3
Perriere, G.4
Vogel, T.M.5
Simonet, P.6
Nalin, R.7
-
18
-
-
24744433982
-
Evolutionary implications of bacterial polyketide synthases
-
Jenke-Kodama H, Sandmann A, Müller R, Dittmann E: Evolutionary implications of bacterial polyketide synthases. Mol Biol Evol 2005, 22:2027-2039. 10.1093/molbev/msi193.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2027-2039
-
-
Jenke-Kodama, H.1
Sandmann, A.2
Müller, R.3
Dittmann, E.4
-
19
-
-
33750428183
-
Natural biocombinatorics in the polyketide synthase genes of the actinobacterium Streptomyces avermitilis
-
Jenke-Kodama H, Börner T, Dittmann E: Natural biocombinatorics in the polyketide synthase genes of the actinobacterium Streptomyces avermitilis. PLoS Comput Biol 2006, 2:e132. 10.1371/journal.pcbi.0020132.
-
(2006)
PLoS Comput Biol
, vol.2
, pp. e132
-
-
Jenke-Kodama, H.1
Börner, T.2
Dittmann, E.3
-
20
-
-
42449155111
-
The evolution of gene collectives: how natural selection drives chemical innovation
-
Fischbach M, Walsh CT, Clardy J: The evolution of gene collectives: how natural selection drives chemical innovation. Proc Natl Acad Sci U S A 2008, 105:4601-4608. 10.1073/pnas.0709132105.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 4601-4608
-
-
Fischbach, M.1
Walsh, C.T.2
Clardy, J.3
-
21
-
-
69249202590
-
The biosynthetic logic of polyketide diversity
-
Hertweck C: The biosynthetic logic of polyketide diversity. Angew Chem-Int Edit 2009, 48:4688-4716. 10.1002/anie.200806121.
-
(2009)
Angew Chem-Int Edit
, vol.48
, pp. 4688-4716
-
-
Hertweck, C.1
-
22
-
-
77957378085
-
The genetic and molecular basis for sunscreen biosynthesis in cyanobacteria
-
Balskus EP, Walsh CT: The genetic and molecular basis for sunscreen biosynthesis in cyanobacteria. Science 2010, 329:1653-1656. 10.1126/science.1193637.
-
(2010)
Science
, vol.329
, pp. 1653-1656
-
-
Balskus, E.P.1
Walsh, C.T.2
-
23
-
-
64249155091
-
Nonribosomal peptide synthetases: mechanistic and structural aspects of essential domains
-
Marahiel M, Essen L-O: Nonribosomal peptide synthetases: mechanistic and structural aspects of essential domains. Method Enzymol 2009, 458:337-351.
-
(2009)
Method Enzymol
, vol.458
, pp. 337-351
-
-
Marahiel, M.1
Essen, L.-O.2
-
24
-
-
77949546759
-
Two alternative starter modules for the non-ribosomal biosynthesis of specific anabaenopeptin variants in Anabaena (Cyanobacteria)
-
Rouhiainen L, Jokela J, Fewer DP, Urmann M, Sivonen K: Two alternative starter modules for the non-ribosomal biosynthesis of specific anabaenopeptin variants in Anabaena (Cyanobacteria). Chem Biol 2010, 17:265-273. 10.1016/j.chembiol.2010.01.017.
-
(2010)
Chem Biol
, vol.17
, pp. 265-273
-
-
Rouhiainen, L.1
Jokela, J.2
Fewer, D.P.3
Urmann, M.4
Sivonen, K.5
-
25
-
-
33749709837
-
Nodularin, microcystin, and the configuration of Adda
-
Rinehart K, Harada K, Namikoshi M, Chen C, Harvis CA, Munro MHG, Blunt JW, Mulligan P, Beasley V, Dahlem A, Carmichael W: Nodularin, microcystin, and the configuration of Adda. J Am Chem Soc 1988, 110:8557-8558. 10.1021/ja00233a049.
-
(1988)
J Am Chem Soc
, vol.110
, pp. 8557-8558
-
-
Rinehart, K.1
Harada, K.2
Namikoshi, M.3
Chen, C.4
Harvis, C.A.5
Munro, M.H.G.6
Blunt, J.W.7
Mulligan, P.8
Beasley, V.9
Dahlem, A.10
Carmichael, W.11
-
26
-
-
82955194437
-
Anatoxin-a synthetase gene cluster of the cyanobacterium Anabaena sp. strain 37 and molecular methods to detect potential producers
-
Rantala-Ylinen A, Kana S, Wang H, Rouhiainen L, Wahlsten M, Rizzi E, Berg K, Gugger M, Sivonen K: Anatoxin-a synthetase gene cluster of the cyanobacterium Anabaena sp. strain 37 and molecular methods to detect potential producers. Appl Environ Microbiol 2011, 77:7271-7278. 10.1128/AEM.06022-11.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 7271-7278
-
-
Rantala-Ylinen, A.1
Kana, S.2
Wang, H.3
Rouhiainen, L.4
Wahlsten, M.5
Rizzi, E.6
Berg, K.7
Gugger, M.8
Sivonen, K.9
-
27
-
-
17644409017
-
Neurotoxins in axenic oscillatorian cyanobacteria: coexistence of anatoxin-a and homoanatoxin-a determined by ligand-binding assay and GC/MS
-
Araoz R, Nghiem H-O, Rippka R, Palibroda N, Tandeau de Marsac N, Herdman M: Neurotoxins in axenic oscillatorian cyanobacteria: coexistence of anatoxin-a and homoanatoxin-a determined by ligand-binding assay and GC/MS. Microbiology 2005, 151:1263-1273. 10.1099/mic.0.27660-0.
-
(2005)
Microbiology
, vol.151
, pp. 1263-1273
-
-
Araoz, R.1
Nghiem, H.-O.2
Rippka, R.3
Palibroda, N.4
Tandeau de Marsac, N.5
Herdman, M.6
-
28
-
-
66049129630
-
Marine sponges: potential sources of new antimicrobial drugs
-
Laport M, Santos O, Muricy G: Marine sponges: potential sources of new antimicrobial drugs. Curr Pharm Biotechnol 2009, 10:86-105. 10.2174/138920109787048625.
-
(2009)
Curr Pharm Biotechnol
, vol.10
, pp. 86-105
-
-
Laport, M.1
Santos, O.2
Muricy, G.3
-
29
-
-
84874051724
-
A genomic approach to the cryptic secondary metabolome of the anaerobic world
-
Letzel A-C, Pidot S, Hertweck C: A genomic approach to the cryptic secondary metabolome of the anaerobic world. Nat Prod Rep 2013, 30:377-476.
-
(2013)
Nat Prod Rep
, vol.30
, pp. 377-476
-
-
Letzel, A.-C.1
Pidot, S.2
Hertweck, C.3
-
30
-
-
0032173634
-
Global dinucleotide signatures and analysis of genomic heterogeneity
-
Karlin S: Global dinucleotide signatures and analysis of genomic heterogeneity. Curr Opin Microbiol 1998, 1:598-610. 10.1016/S1369-5274(98)80095-7.
-
(1998)
Curr Opin Microbiol
, vol.1
, pp. 598-610
-
-
Karlin, S.1
-
31
-
-
26244435952
-
Clustered genes required for synthesis and deposition of envelope glycolipids in Anabaena sp. strain PCC 7120
-
Fan Q, Huang G, Lechno-Yossef S, Wolk CP, Kaneko T, Tabata S: Clustered genes required for synthesis and deposition of envelope glycolipids in Anabaena sp. strain PCC 7120. Mol Microbiol 2005, 58:227-243. 10.1111/j.1365-2958.2005.04818.x.
-
(2005)
Mol Microbiol
, vol.58
, pp. 227-243
-
-
Fan, Q.1
Huang, G.2
Lechno-Yossef, S.3
Wolk, C.P.4
Kaneko, T.5
Tabata, S.6
-
33
-
-
79956266058
-
Widespread occurrence of secondary lipid biosynthesis potential in microbial lineages
-
Shulse C, Allen E: Widespread occurrence of secondary lipid biosynthesis potential in microbial lineages. PLoS One 2011, 6:e20146. 10.1371/journal.pone.0020146.
-
(2011)
PLoS One
, vol.6
, pp. e20146
-
-
Shulse, C.1
Allen, E.2
-
34
-
-
0021023955
-
Siderophore-mediated iron uptake in different strains of Anabaena sp
-
Goldman S, Lammers P, Berman M, Sanders-Loehr J: Siderophore-mediated iron uptake in different strains of Anabaena sp. J Bacteriol 1983, 156:1144-1150.
-
(1983)
J Bacteriol
, vol.156
, pp. 1144-1150
-
-
Goldman, S.1
Lammers, P.2
Berman, M.3
Sanders-Loehr, J.4
-
35
-
-
0033728391
-
Anachelin, the siderophore of the cyanobacterium Anabaena cylindrica CCAP 1403/2A
-
Beiderbeck H, Taraz K, Budzikiewicz H, Walsby A: Anachelin, the siderophore of the cyanobacterium Anabaena cylindrica CCAP 1403/2A. Z Naturforsch C 2000, 55:681-687.
-
(2000)
Z Naturforsch C
, vol.55
, pp. 681-687
-
-
Beiderbeck, H.1
Taraz, K.2
Budzikiewicz, H.3
Walsby, A.4
-
36
-
-
0035968876
-
Two structural isomeric siderophores from the freshwater cyanobacterium Anabaena cylindrica (NIES-19)
-
Itou Y, Okada S, Murakami M: Two structural isomeric siderophores from the freshwater cyanobacterium Anabaena cylindrica (NIES-19). Tetrahedron 2001, 57:9093-9099. 10.1016/S0040-4020(01)00934-6.
-
(2001)
Tetrahedron
, vol.57
, pp. 9093-9099
-
-
Itou, Y.1
Okada, S.2
Murakami, M.3
-
37
-
-
4444281880
-
The absolute stereochemistry of anachelins, siderophores from the cyanobacterium Anabaena cylindrica
-
Ito Y, Ishida K, Okada S, Murakami M: The absolute stereochemistry of anachelins, siderophores from the cyanobacterium Anabaena cylindrica. Tetrahedron 2004, 60:9075-9080. 10.1016/j.tet.2004.07.105.
-
(2004)
Tetrahedron
, vol.60
, pp. 9075-9080
-
-
Ito, Y.1
Ishida, K.2
Okada, S.3
Murakami, M.4
-
38
-
-
51649098972
-
A large gene cluster encoding peptide synthetases and polyketide synthases is involved in production of siderophores and oxidative stress response in the cyanobacterium Anabaena sp. strain PCC 7120
-
Jeanjean R, Talla E, Latifi A, Havaux M, Janicki A, Zhang CC: A large gene cluster encoding peptide synthetases and polyketide synthases is involved in production of siderophores and oxidative stress response in the cyanobacterium Anabaena sp. strain PCC 7120. Environ Microbiol 2008, 10:2574-2585. 10.1111/j.1462-2920.2008.01680.x.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2574-2585
-
-
Jeanjean, R.1
Talla, E.2
Latifi, A.3
Havaux, M.4
Janicki, A.5
Zhang, C.C.6
-
39
-
-
9144265841
-
Identification and analysis of a siderophore biosynthetic gene cluster from Agrobacterium tumefaciens C58
-
Rondon M, Ballering K, Thomas M: Identification and analysis of a siderophore biosynthetic gene cluster from Agrobacterium tumefaciens C58. Microbiology 2004, 150:3857-3866. 10.1099/mic.0.27319-0.
-
(2004)
Microbiology
, vol.150
, pp. 3857-3866
-
-
Rondon, M.1
Ballering, K.2
Thomas, M.3
-
40
-
-
77954679917
-
The unique mechanistic transformations involved in the biosynthesis of modular natural products from marine cyanobacteria
-
Jones A, Monroe E, Eisman E, Gerwick L, Sherman D, Gerwick WH: The unique mechanistic transformations involved in the biosynthesis of modular natural products from marine cyanobacteria. Nat Prod Rep 2010, 27:1048-1065. 10.1039/c000535e.
-
(2010)
Nat Prod Rep
, vol.27
, pp. 1048-1065
-
-
Jones, A.1
Monroe, E.2
Eisman, E.3
Gerwick, L.4
Sherman, D.5
Gerwick, W.H.6
-
41
-
-
84881507586
-
A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa
-
Humbert JF, Barbe V, Latifi A, Gugger M, Calteau A, Coursin T, Lajus A, Castelli V, Oztas S, Samson G, Longin C, Medigue C, de Marsac NT: A tribute to disorder in the genome of the bloom-forming freshwater cyanobacterium Microcystis aeruginosa. PLoS One 2013, 8:e70747. 10.1371/journal.pone.0070747.
-
(2013)
PLoS One
, vol.8
, pp. e70747
-
-
Humbert, J.F.1
Barbe, V.2
Latifi, A.3
Gugger, M.4
Calteau, A.5
Coursin, T.6
Lajus, A.7
Castelli, V.8
Oztas, S.9
Samson, G.10
Longin, C.11
Medigue, C.12
de Marsac, N.T.13
-
42
-
-
84871912445
-
Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix freshwater strains
-
Sogge H, Rohrlack T, Rounge TB, Sonstebo JH, Tooming-Klunderud A, Kristensen T, Jakobsen KS: Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix freshwater strains. Appl Environ Microbiol 2013, 79:508-515. 10.1128/AEM.02417-12.
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 508-515
-
-
Sogge, H.1
Rohrlack, T.2
Rounge, T.B.3
Sonstebo, J.H.4
Tooming-Klunderud, A.5
Kristensen, T.6
Jakobsen, K.S.7
-
43
-
-
84896918327
-
Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora
-
Ziemert N, Lechner A, Wietz M, Millan-Aguinaga N, Chavarria KL, Jensen PR: Diversity and evolution of secondary metabolism in the marine actinomycete genus Salinispora. Proc Natl Acad Sci U S A 2014, 111:E1130-E1139. 10.1073/pnas.1324161111.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. E1130-E1139
-
-
Ziemert, N.1
Lechner, A.2
Wietz, M.3
Millan-Aguinaga, N.4
Chavarria, K.L.5
Jensen, P.R.6
-
44
-
-
47149092637
-
Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria
-
Dufresne A, Ostrowski M, Scanlan DJ, Garczarek L, Mazard S, Palenik BP, Paulsen IT, Tandeau de Marsac N, Wincker P, Dossat C, Ferriera S, Johnson J, Post AF, Hess WR, Partensky F: Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria. Genome Biol 2008, 9:R90. 10.1186/gb-2008-9-5-r90.
-
(2008)
Genome Biol
, vol.9
, pp. R90
-
-
Dufresne, A.1
Ostrowski, M.2
Scanlan, D.J.3
Garczarek, L.4
Mazard, S.5
Palenik, B.P.6
Paulsen, I.T.7
Tandeau de Marsac, N.8
Wincker, P.9
Dossat, C.10
Ferriera, S.11
Johnson, J.12
Post, A.F.13
Hess, W.R.14
Partensky, F.15
-
45
-
-
84867904826
-
Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations
-
Szöllosi G, Boussau B, Abby S, Tannier E, Daubin V: Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations. Proc Natl Acad Sci U S A 2012, 109:17513-17518. 10.1073/pnas.1202997109.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 17513-17518
-
-
Szöllosi, G.1
Boussau, B.2
Abby, S.3
Tannier, E.4
Daubin, V.5
-
46
-
-
84906943195
-
Secondary metabolite gene expression and interplay of bacterial functions in a tropical freshwater cyanobacterial bloom
-
Penn K, Wang J, Fernando SC, Thompson JR: Secondary metabolite gene expression and interplay of bacterial functions in a tropical freshwater cyanobacterial bloom. ISME J 2014, 8:1866-1878. 10.1038/ismej.2014.27.
-
(2014)
ISME J
, vol.8
, pp. 1866-1878
-
-
Penn, K.1
Wang, J.2
Fernando, S.C.3
Thompson, J.R.4
-
47
-
-
0033607001
-
Competition among marine phytoplankton for different chelated iron species
-
Hutchins D, Witter A, Butler A, Luther G III: Competition among marine phytoplankton for different chelated iron species. Nature 1999, 400:858-861. 10.1038/23680.
-
(1999)
Nature
, vol.400
, pp. 858-861
-
-
Hutchins, D.1
Witter, A.2
Butler, A.3
Luther, G.4
-
48
-
-
84882447063
-
Metagenomic natural product discovery in lichen provides evidence for a family of biosynthetic pathways in diverse symbioses
-
Kampa A, Gagunashvili A, Gulder T, Morikana B, Daolio C, Godejohann M, Miao V, Piel J, Andrésson O: Metagenomic natural product discovery in lichen provides evidence for a family of biosynthetic pathways in diverse symbioses. Proc Natl Acad Sci U S A 2013, 110:E3129-E3137. 10.1073/pnas.1305867110.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E3129-E3137
-
-
Kampa, A.1
Gagunashvili, A.2
Gulder, T.3
Morikana, B.4
Daolio, C.5
Godejohann, M.6
Miao, V.7
Piel, J.8
Andrésson, O.9
-
49
-
-
84883178802
-
Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides
-
Leikoski N, Liu L, Jokela J, Wahlsten M, Gugger M, Calteau A, Permi P, Kerfeld C, Sivonen K, Fewer D: Genome mining expands the chemical diversity of the cyanobactin family to include highly modified linear peptides. Chem Biol 2013, 20:1033-1043. 10.1016/j.chembiol.2013.06.015.
-
(2013)
Chem Biol
, vol.20
, pp. 1033-1043
-
-
Leikoski, N.1
Liu, L.2
Jokela, J.3
Wahlsten, M.4
Gugger, M.5
Calteau, A.6
Permi, P.7
Kerfeld, C.8
Sivonen, K.9
Fewer, D.10
-
50
-
-
84861624891
-
Structural characterization of four prochlorosins: a novel class of lantipeptides produced by planktonic marine cyanobacteria
-
Tang W, van der Donk WA: Structural characterization of four prochlorosins: a novel class of lantipeptides produced by planktonic marine cyanobacteria. Biochemistry 2012, 51:4271-4279. 10.1021/bi300255s.
-
(2012)
Biochemistry
, vol.51
, pp. 4271-4279
-
-
Tang, W.1
van der Donk, W.A.2
-
51
-
-
43749113148
-
A global assembly line for cyanobactins
-
Donia MS, Ravel J, Schmidt EW: A global assembly line for cyanobactins. Nat Chem Biol 2008, 4:341-343. 10.1038/nchembio.84.
-
(2008)
Nat Chem Biol
, vol.4
, pp. 341-343
-
-
Donia, M.S.1
Ravel, J.2
Schmidt, E.W.3
-
52
-
-
84893460683
-
Challenges and triumphs to genomics-based natural product discovery
-
Jensen PR, Chavarria KL, Fenical W, Moore BS, Ziemert N: Challenges and triumphs to genomics-based natural product discovery. J Ind Microbiol Biotechnol 2014, 41:203-209. 10.1007/s10295-013-1353-8.
-
(2014)
J Ind Microbiol Biotechnol
, vol.41
, pp. 203-209
-
-
Jensen, P.R.1
Chavarria, K.L.2
Fenical, W.3
Moore, B.S.4
Ziemert, N.5
-
53
-
-
84893096673
-
Quantitative molecular networking to profile marine cyanobacterial metabolomes
-
Winnikoff JR, Glukhov E, Watrous J, Dorrestein PC, Gerwick WH: Quantitative molecular networking to profile marine cyanobacterial metabolomes. J Antibiot 2014, 67:105-112. 10.1038/ja.2013.120.
-
(2014)
J Antibiot
, vol.67
, pp. 105-112
-
-
Winnikoff, J.R.1
Glukhov, E.2
Watrous, J.3
Dorrestein, P.C.4
Gerwick, W.H.5
-
54
-
-
84862999012
-
Mass spectral molecular networking of living microbial colonies
-
Watrous J, Roach P, Alexandrov T, Heath BS, Yang JY, Kersten RD, van der Voort M, Pogliano K, Gross H, Raaijmakers JM, Moore BS, Laskin J, Bandeira N, Dorrestein PC: Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci U S A 2012, 109:E1743-E1752. 10.1073/pnas.1203689109.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. E1743-E1752
-
-
Watrous, J.1
Roach, P.2
Alexandrov, T.3
Heath, B.S.4
Yang, J.Y.5
Kersten, R.D.6
van der Voort, M.7
Pogliano, K.8
Gross, H.9
Raaijmakers, J.M.10
Moore, B.S.11
Laskin, J.12
Bandeira, N.13
Dorrestein, P.C.14
-
55
-
-
84879908779
-
MS/MS networking guided analysis of molecule and gene cluster families
-
Nguyen DD, Wu CH, Moree WJ, Lamsa A, Medema MH, Zhao X, Gavilan RG, Aparicio M, Atencio L, Jackson C, Ballesteros J, Sanchez J, Watrous JD, Phelan VV, van de Wiel C, Kersten RD, Mehnaz S, De Mot R, Shank EA, Charusanti P, Nagarajan H, Duggan BM, Moore BS, Bandeira N, Palsson BO, Pogliano K, Gutierrez M, Dorrestein PC: MS/MS networking guided analysis of molecule and gene cluster families. Proc Natl Acad Sci U S A 2013, 110:E2611-E2620. 10.1073/pnas.1303471110.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. E2611-E2620
-
-
Nguyen, D.D.1
Wu, C.H.2
Moree, W.J.3
Lamsa, A.4
Medema, M.H.5
Zhao, X.6
Gavilan, R.G.7
Aparicio, M.8
Atencio, L.9
Jackson, C.10
Ballesteros, J.11
Sanchez, J.12
Watrous, J.D.13
Phelan, V.V.14
van de Wiel, C.15
Kersten, R.D.16
Mehnaz, S.17
De Mot, R.18
Shank, E.A.19
Charusanti, P.20
Nagarajan, H.21
Duggan, B.M.22
Moore, B.S.23
Bandeira, N.24
Palsson, B.O.25
Pogliano, K.26
Gutierrez, M.27
Dorrestein, P.C.28
more..
-
56
-
-
84876580700
-
MicroScope-an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data
-
Vallenet D, Belda E, Calteau A, Cruveiller S, Engelen S, Lajus A, Le Fèvre F, Longin C, Mornico D, Roche D, Rouy Z, Salvignol G, Scarpelli C, Thil Smith A, Weiman M, Médigue C: MicroScope-an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data. Nucleic Acids Res 2013, 41:D636-D647. 10.1093/nar/gks1194.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D636-D647
-
-
Vallenet, D.1
Belda, E.2
Calteau, A.3
Cruveiller, S.4
Engelen, S.5
Lajus, A.6
Le Fèvre, F.7
Longin, C.8
Mornico, D.9
Roche, D.10
Rouy, Z.11
Salvignol, G.12
Scarpelli, C.13
Thil Smith, A.14
Weiman, M.15
Médigue, C.16
-
57
-
-
64249084052
-
Chapter 8. Methods for in silico prediction of microbial secondary metabolic pathways from DNA sequence data
-
Bachmann B, Ravel J: Chapter 8. Methods for in silico prediction of microbial secondary metabolic pathways from DNA sequence data. Method Enzymol 2009, 458:181-217.
-
(2009)
Method Enzymol
, vol.458
, pp. 181-217
-
-
Bachmann, B.1
Ravel, J.2
-
58
-
-
79959920872
-
antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences
-
Medema M, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach M, Weber T, Takano E, Breitling R: antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res 2011, 39:W339-W346. 10.1093/nar/gkr466.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W339-W346
-
-
Medema, M.1
Blin, K.2
Cimermancic, P.3
de Jager, V.4
Zakrzewski, P.5
Fischbach, M.6
Weber, T.7
Takano, E.8
Breitling, R.9
-
59
-
-
84859078407
-
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity
-
Ziemert N, Podell S, Penn K, Badger J, Allen E, Jensen P: The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity. PLoS One 2012, 7:e34064. 10.1371/journal.pone.0034064.
-
(2012)
PLoS One
, vol.7
, pp. e34064
-
-
Ziemert, N.1
Podell, S.2
Penn, K.3
Badger, J.4
Allen, E.5
Jensen, P.6
-
60
-
-
79959936207
-
NRPSpredictor2-a web server for predicting NRPS adenylation domain specificity
-
Röttig M, Medema M, Blin K, Weber T, Rausch C, Kohlbacher O: NRPSpredictor2-a web server for predicting NRPS adenylation domain specificity. Nucleic Acids Res 2011, 39:w362-w367. 10.1093/nar/gkr323.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. w362-w367
-
-
Röttig, M.1
Medema, M.2
Blin, K.3
Weber, T.4
Rausch, C.5
Kohlbacher, O.6
-
61
-
-
3242887157
-
CD-Search: protein domain annotations on the fly
-
Marchler-Bauer A, Bryant S: CD-Search: protein domain annotations on the fly. Nucleic Acids Res 2004, 32:W327-W331. 10.1093/nar/gkh454.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. W327-W331
-
-
Marchler-Bauer, A.1
Bryant, S.2
-
62
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S, Madden T, Schäffer A, Zhang J, Zhang Z, Miller W, Lipman D: Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
Madden, T.2
Schäffer, A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.7
-
63
-
-
36549003965
-
InterPro and InterProScan: tools for protein sequence classification and comparison
-
Mulder N, Apweiler R: InterPro and InterProScan: tools for protein sequence classification and comparison. Methods Mol Biol 2007, 369:59-70.
-
(2007)
Methods Mol Biol
, vol.369
, pp. 59-70
-
-
Mulder, N.1
Apweiler, R.2
-
64
-
-
55649110049
-
A simple, fast, and accurate method of phylogenomic inference
-
Wu M, Eisen J: A simple, fast, and accurate method of phylogenomic inference. Genome Biol 2008, 9:R151. 10.1186/gb-2008-9-10-r151.
-
(2008)
Genome Biol
, vol.9
, pp. R151
-
-
Wu, M.1
Eisen, J.2
-
65
-
-
13744252890
-
MAFFT version 5: improvement in accuracy of multiple sequence alignment
-
Katoh K, Kuma K, Toh H, Miyata T: MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 2005, 33:511-518. 10.1093/nar/gki198.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 511-518
-
-
Katoh, K.1
Kuma, K.2
Toh, H.3
Miyata, T.4
-
66
-
-
77954403053
-
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
-
Criscuolo A, Gribaldo S: BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments. BMC Evol Biol 2010, 10:201. 10.1186/1471-2148-10-201.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 201
-
-
Criscuolo, A.1
Gribaldo, S.2
-
67
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard J, Lefort V, Anisimova M, Hordijk W, Gascuel O: New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59:307-321. 10.1093/sysbio/syq010.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
68
-
-
68149087480
-
Microcystin production in the tripartite cyanolichen Peltigera leucophlebia
-
Kaasalainen U, Jokela J, Fewer D, Sivonen K, Rikkinen J: Microcystin production in the tripartite cyanolichen Peltigera leucophlebia. Mol Plant Microbe Interact 2009, 22:695-702. 10.1094/MPMI-22-6-0695.
-
(2009)
Mol Plant Microbe Interact
, vol.22
, pp. 695-702
-
-
Kaasalainen, U.1
Jokela, J.2
Fewer, D.3
Sivonen, K.4
Rikkinen, J.5
|