-
1
-
-
56649084961
-
New interacting partners of the F-box protein Ufo1 of yeast
-
K. Baranes-Bachar, K. Baranes-Bacher, I. Khalaila, Y. Ivantsiv, A. Lavut, O. Voloshin, and D. Raveh New interacting partners of the F-box protein Ufo1 of yeast Yeast 25 2008 733 743
-
(2008)
Yeast
, vol.25
, pp. 733-743
-
-
Baranes-Bachar, K.1
Baranes-Bacher, K.2
Khalaila, I.3
Ivantsiv, Y.4
Lavut, A.5
Voloshin, O.6
Raveh, D.7
-
2
-
-
0030052841
-
Surface hydrophobic residues of multiubiquitin chains essential for proteolytic targeting
-
R. Beal, Q. Deveraux, G. Xia, M. Rechsteiner, and C. Pickart Surface hydrophobic residues of multiubiquitin chains essential for proteolytic targeting Proc. Natl. Acad. Sci. USA 93 1996 861 866
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 861-866
-
-
Beal, R.1
Deveraux, Q.2
Xia, G.3
Rechsteiner, M.4
Pickart, C.5
-
3
-
-
0035834467
-
UBA domains mediate protein-protein interactions between two DNA damage-inducible proteins
-
B.L. Bertolaet, D.J. Clarke, M. Wolff, M.H. Watson, M. Henze, G. Divita, and S.I. Reed UBA domains mediate protein-protein interactions between two DNA damage-inducible proteins J. Mol. Biol. 313 2001 955 963
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 955-963
-
-
Bertolaet, B.L.1
Clarke, D.J.2
Wolff, M.3
Watson, M.H.4
Henze, M.5
Divita, G.6
Reed, S.I.7
-
4
-
-
0035034417
-
UBA domains of DNA damage-inducible proteins interact with ubiquitin
-
B.L. Bertolaet, D.J. Clarke, M. Wolff, M.H. Watson, M. Henze, G. Divita, and S.I. Reed UBA domains of DNA damage-inducible proteins interact with ubiquitin Nat. Struct. Biol. 8 2001 417 422
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 417-422
-
-
Bertolaet, B.L.1
Clarke, D.J.2
Wolff, M.3
Watson, M.H.4
Henze, M.5
Divita, G.6
Reed, S.I.7
-
5
-
-
0036277299
-
Rad23 promotes the targeting of proteolytic substrates to the proteasome
-
L. Chen, and K. Madura Rad23 promotes the targeting of proteolytic substrates to the proteasome Mol. Cell. Biol. 22 2002 4902 4913
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 4902-4913
-
-
Chen, L.1
Madura, K.2
-
6
-
-
0034762028
-
Ubiquitin-associated (UBA) domains in Rad23 bind ubiquitin and promote inhibition of multi-ubiquitin chain assembly
-
L. Chen, U. Shinde, T.G. Ortolan, and K. Madura Ubiquitin-associated (UBA) domains in Rad23 bind ubiquitin and promote inhibition of multi-ubiquitin chain assembly EMBO Rep. 2 2001 933 938
-
(2001)
EMBO Rep.
, vol.2
, pp. 933-938
-
-
Chen, L.1
Shinde, U.2
Ortolan, T.G.3
Madura, K.4
-
7
-
-
0028500556
-
The ubiquitin-mediated proteolytic pathway: Mechanisms of action and cellular physiology
-
A. Ciechanover The ubiquitin-mediated proteolytic pathway: mechanisms of action and cellular physiology Biol. Chem. Hoppe Seyler 375 1994 565 581
-
(1994)
Biol. Chem. Hoppe Seyler
, vol.375
, pp. 565-581
-
-
Ciechanover, A.1
-
8
-
-
0028018268
-
The ubiquitin-proteasome proteolytic pathway
-
A. Ciechanover The ubiquitin-proteasome proteolytic pathway Cell 79 1994 13 21
-
(1994)
Cell
, vol.79
, pp. 13-21
-
-
Ciechanover, A.1
-
9
-
-
0035024340
-
Dosage suppressors of pds1 implicate ubiquitin-associated domains in checkpoint control
-
D.J. Clarke, G. Mondesert, M. Segal, B.L. Bertolaet, S. Jensen, M. Wolff, M. Henze, and S.I. Reed Dosage suppressors of pds1 implicate ubiquitin-associated domains in checkpoint control Mol. Cell. Biol. 21 2001 1997 2007
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 1997-2007
-
-
Clarke, D.J.1
Mondesert, G.2
Segal, M.3
Bertolaet, B.L.4
Jensen, S.5
Wolff, M.6
Henze, M.7
Reed, S.I.8
-
10
-
-
0032879507
-
R-factor, free R, and complete cross-validation for dipolar coupling refinement of NMR structures
-
G. Clore, and D. Garrett R-factor, free R, and complete cross-validation for dipolar coupling refinement of NMR structures J. Am. Chem. Soc. 121 1999 9008 9012
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 9008-9012
-
-
Clore, G.1
Garrett, D.2
-
11
-
-
0037123605
-
Emerging roles of ubiquitin in transcription regulation
-
R.C. Conaway, C.S. Brower, and J.W. Conaway Emerging roles of ubiquitin in transcription regulation Science 296 2002 1254 1258
-
(2002)
Science
, vol.296
, pp. 1254-1258
-
-
Conaway, R.C.1
Brower, C.S.2
Conaway, J.W.3
-
12
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
G. Cornilescu, F. Delaglio, and A. Bax Protein backbone angle restraints from searching a database for chemical shift and sequence homology J. Biomol. NMR 13 1999 289 302
-
(1999)
J. Biomol. NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
13
-
-
77955391393
-
The HADDOCK web server for data-driven biomolecular docking
-
S.J. de Vries, M. van Dijk, and A.M. Bonvin The HADDOCK web server for data-driven biomolecular docking Nat. Protoc. 5 2010 883 897
-
(2010)
Nat. Protoc.
, vol.5
, pp. 883-897
-
-
De Vries, S.J.1
Van Dijk, M.2
Bonvin, A.M.3
-
14
-
-
34248390196
-
Yeast UBL-UBA proteins have partially redundant functions in cell cycle control
-
L.A. Díaz-Martínez, Y. Kang, K.J. Walters, and D.J. Clarke Yeast UBL-UBA proteins have partially redundant functions in cell cycle control Cell Div. 1 2006 28
-
(2006)
Cell Div.
, vol.1
, pp. 28
-
-
Díaz-Martínez, L.A.1
Kang, Y.2
Walters, K.J.3
Clarke, D.J.4
-
15
-
-
3242886771
-
PDB2PQR: An automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
-
T.J. Dolinsky, J.E. Nielsen, J.A. McCammon, and N.A. Baker PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations Nucleic Acids Res. 32 2004 W665 W667
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. W665-W667
-
-
Dolinsky, T.J.1
Nielsen, J.E.2
McCammon, J.A.3
Baker, N.A.4
-
16
-
-
23144449583
-
Delivery of ubiquitinated substrates to protein-unfolding machines
-
S. Elsasser, and D. Finley Delivery of ubiquitinated substrates to protein-unfolding machines Nat. Cell Biol. 7 2005 742 749
-
(2005)
Nat. Cell Biol.
, vol.7
, pp. 742-749
-
-
Elsasser, S.1
Finley, D.2
-
17
-
-
3042677641
-
Rad23 and Rpn10 serve as alternative ubiquitin receptors for the proteasome
-
S. Elsasser, D. Chandler-Militello, B. Müller, J. Hanna, and D. Finley Rad23 and Rpn10 serve as alternative ubiquitin receptors for the proteasome J. Biol. Chem. 279 2004 26817 26822
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 26817-26822
-
-
Elsasser, S.1
Chandler-Militello, D.2
Müller, B.3
Hanna, J.4
Finley, D.5
-
18
-
-
0037154160
-
Budding yeast Dsk2p is a polyubiquitin-binding protein that can interact with the proteasome
-
M. Funakoshi, T. Sasaki, T. Nishimoto, and H. Kobayashi Budding yeast Dsk2p is a polyubiquitin-binding protein that can interact with the proteasome Proc. Natl. Acad. Sci. USA 99 2002 745 750
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 745-750
-
-
Funakoshi, M.1
Sasaki, T.2
Nishimoto, T.3
Kobayashi, H.4
-
19
-
-
82955193293
-
Structure and recognition of polyubiquitin chains of different lengths and linkage
-
D. Fushman, and K.D. Wilkinson Structure and recognition of polyubiquitin chains of different lengths and linkage F1000 Biol. Rep. 3 2011 26
-
(2011)
F1000 Biol. Rep.
, vol.3
, pp. 26
-
-
Fushman, D.1
Wilkinson, K.D.2
-
20
-
-
55549084908
-
Different domains of the UBL-UBA ubiquitin receptor, Ddi1/Vsm1, are involved in its multiple cellular roles
-
G. Gabriely, R. Kama, R. Gelin-Licht, and J.E. Gerst Different domains of the UBL-UBA ubiquitin receptor, Ddi1/Vsm1, are involved in its multiple cellular roles Mol. Biol. Cell 19 2008 3625 3637
-
(2008)
Mol. Biol. Cell
, vol.19
, pp. 3625-3637
-
-
Gabriely, G.1
Kama, R.2
Gelin-Licht, R.3
Gerst, J.E.4
-
21
-
-
79957637389
-
Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1
-
T.A. Gomez, N. Kolawa, M. Gee, M.J. Sweredoski, and R.J. Deshaies Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1 BMC Biol. 9 2011 33
-
(2011)
BMC Biol.
, vol.9
, pp. 33
-
-
Gomez, T.A.1
Kolawa, N.2
Gee, M.3
Sweredoski, M.J.4
Deshaies, R.J.5
-
22
-
-
37349046664
-
Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins
-
A. Haririnia, R. Verma, N. Purohit, M.Z. Twarog, R.J. Deshaies, D. Bolon, and D. Fushman Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins J. Mol. Biol. 375 2008 979 996
-
(2008)
J. Mol. Biol.
, vol.375
, pp. 979-996
-
-
Haririnia, A.1
Verma, R.2
Purohit, N.3
Twarog, M.Z.4
Deshaies, R.J.5
Bolon, D.6
Fushman, D.7
-
23
-
-
1342300578
-
Integral UBL domain proteins: A family of proteasome interacting proteins
-
R. Hartmann-Petersen, and C. Gordon Integral UBL domain proteins: a family of proteasome interacting proteins Semin. Cell Dev. Biol. 15 2004 247 259
-
(2004)
Semin. Cell Dev. Biol.
, vol.15
, pp. 247-259
-
-
Hartmann-Petersen, R.1
Gordon, C.2
-
24
-
-
17044368771
-
The UBA2 domain functions as an intrinsic stabilization signal that protects Rad23 from proteasomal degradation
-
S. Heessen, M.G. Masucci, and N.P. Dantuma The UBA2 domain functions as an intrinsic stabilization signal that protects Rad23 from proteasomal degradation Mol. Cell 18 2005 225 235
-
(2005)
Mol. Cell
, vol.18
, pp. 225-235
-
-
Heessen, S.1
Masucci, M.G.2
Dantuma, N.P.3
-
25
-
-
0035823032
-
A new ticket for entry into budding vesicles-ubiquitin
-
L. Hicke A new ticket for entry into budding vesicles-ubiquitin Cell 106 2001 527 530
-
(2001)
Cell
, vol.106
, pp. 527-530
-
-
Hicke, L.1
-
26
-
-
0035293622
-
Protein regulation by monoubiquitin
-
L. Hicke Protein regulation by monoubiquitin Nat. Rev. Mol. Cell Biol. 2 2001 195 201
-
(2001)
Nat. Rev. Mol. Cell Biol.
, vol.2
, pp. 195-201
-
-
Hicke, L.1
-
28
-
-
0037068455
-
RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO
-
C. Hoege, B. Pfander, G.L. Moldovan, G. Pyrowolakis, and S. Jentsch RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO Nature 419 2002 135 141
-
(2002)
Nature
, vol.419
, pp. 135-141
-
-
Hoege, C.1
Pfander, B.2
Moldovan, G.L.3
Pyrowolakis, G.4
Jentsch, S.5
-
29
-
-
44349116590
-
Proteasome subunit Rpn13 is a novel ubiquitin receptor
-
K. Husnjak, S. Elsasser, N. Zhang, X. Chen, L. Randles, Y. Shi, K. Hofmann, K.J. Walters, D. Finley, and I. Dikic Proteasome subunit Rpn13 is a novel ubiquitin receptor Nature 453 2008 481 488
-
(2008)
Nature
, vol.453
, pp. 481-488
-
-
Husnjak, K.1
Elsasser, S.2
Zhang, N.3
Chen, X.4
Randles, L.5
Shi, Y.6
Hofmann, K.7
Walters, K.J.8
Finley, D.9
Dikic, I.10
-
30
-
-
33644513063
-
Unique role for the UbL-UbA protein Ddi1 in turnover of SCFUfo1 complexes
-
Y. Ivantsiv, L. Kaplun, R. Tzirkin-Goldin, N. Shabek, and D. Raveh Unique role for the UbL-UbA protein Ddi1 in turnover of SCFUfo1 complexes Mol. Cell. Biol. 26 2006 1579 1588
-
(2006)
Mol. Cell. Biol.
, vol.26
, pp. 1579-1588
-
-
Ivantsiv, Y.1
Kaplun, L.2
Tzirkin-Goldin, R.3
Shabek, N.4
Raveh, D.5
-
31
-
-
79961000536
-
Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin pools
-
S.E. Kaiser, B.E. Riley, T.A. Shaler, R.S. Trevino, C.H. Becker, H. Schulman, and R.R. Kopito Protein standard absolute quantification (PSAQ) method for the measurement of cellular ubiquitin pools Nat. Methods 8 2011 691 696
-
(2011)
Nat. Methods
, vol.8
, pp. 691-696
-
-
Kaiser, S.E.1
Riley, B.E.2
Shaler, T.A.3
Trevino, R.S.4
Becker, C.H.5
Schulman, H.6
Kopito, R.R.7
-
32
-
-
31344457298
-
UBL/UBA ubiquitin receptor proteins bind a common tetraubiquitin chain
-
Y. Kang, R.A. Vossler, L.A. Diaz-Martinez, N.S. Winter, D.J. Clarke, and K.J. Walters UBL/UBA ubiquitin receptor proteins bind a common tetraubiquitin chain J. Mol. Biol. 356 2006 1027 1035
-
(2006)
J. Mol. Biol.
, vol.356
, pp. 1027-1035
-
-
Kang, Y.1
Vossler, R.A.2
Diaz-Martinez, L.A.3
Winter, N.S.4
Clarke, D.J.5
Walters, K.J.6
-
33
-
-
0034730134
-
Functions of the DNA damage response pathway target Ho endonuclease of yeast for degradation via the ubiquitin-26S proteasome system
-
L. Kaplun, Y. Ivantsiv, D. Kornitzer, and D. Raveh Functions of the DNA damage response pathway target Ho endonuclease of yeast for degradation via the ubiquitin-26S proteasome system Proc. Natl. Acad. Sci. USA 97 2000 10077 10082
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 10077-10082
-
-
Kaplun, L.1
Ivantsiv, Y.2
Kornitzer, D.3
Raveh, D.4
-
34
-
-
1542467522
-
DNA damage response-mediated degradation of Ho endonuclease via the ubiquitin system involves its nuclear export
-
L. Kaplun, Y. Ivantsiv, A. Bakhrat, and D. Raveh DNA damage response-mediated degradation of Ho endonuclease via the ubiquitin system involves its nuclear export J. Biol. Chem. 278 2003 48727 48734
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 48727-48734
-
-
Kaplun, L.1
Ivantsiv, Y.2
Bakhrat, A.3
Raveh, D.4
-
35
-
-
20444417275
-
The DNA damage-inducible UbL-UbA protein Ddi1 participates in Mec1-mediated degradation of Ho endonuclease
-
L. Kaplun, R. Tzirkin, A. Bakhrat, N. Shabek, Y. Ivantsiv, and D. Raveh The DNA damage-inducible UbL-UbA protein Ddi1 participates in Mec1-mediated degradation of Ho endonuclease Mol. Cell. Biol. 25 2005 5355 5362
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 5355-5362
-
-
Kaplun, L.1
Tzirkin, R.2
Bakhrat, A.3
Shabek, N.4
Ivantsiv, Y.5
Raveh, D.6
-
36
-
-
3042764201
-
Multiple interactions of rad23 suggest a mechanism for ubiquitylated substrate delivery important in proteolysis
-
I. Kim, K. Mi, and H. Rao Multiple interactions of rad23 suggest a mechanism for ubiquitylated substrate delivery important in proteolysis Mol. Biol. Cell 15 2004 3357 3365
-
(2004)
Mol. Biol. Cell
, vol.15
, pp. 3357-3365
-
-
Kim, I.1
Mi, K.2
Rao, H.3
-
37
-
-
0033636785
-
The hPLIC proteins may provide a link between the ubiquitination machinery and the proteasome
-
M.F. Kleijnen, A.H. Shih, P. Zhou, S. Kumar, R.E. Soccio, N.L. Kedersha, G. Gill, and P.M. Howley The hPLIC proteins may provide a link between the ubiquitination machinery and the proteasome Mol. Cell 6 2000 409 419
-
(2000)
Mol. Cell
, vol.6
, pp. 409-419
-
-
Kleijnen, M.F.1
Shih, A.H.2
Zhou, P.3
Kumar, S.4
Soccio, R.E.5
Kedersha, N.L.6
Gill, G.7
Howley, P.M.8
-
38
-
-
0029881007
-
MOLMOL: A program for display and analysis of macromolecular structures
-
29-32
-
R. Koradi, M. Billeter, and K. Wuthrich MOLMOL: a program for display and analysis of macromolecular structures J. Mol. Graph. 14 1996 51 55 29-32
-
(1996)
J. Mol. Graph.
, vol.14
, pp. 51-55
-
-
Koradi, R.1
Billeter, M.2
Wuthrich, K.3
-
39
-
-
0032879814
-
Pleiotropic defects caused by loss of the proteasome-interacting factors Rad23 and Rpn10 of Saccharomyces cerevisiae
-
D. Lambertson, L. Chen, and K. Madura Pleiotropic defects caused by loss of the proteasome-interacting factors Rad23 and Rpn10 of Saccharomyces cerevisiae Genetics 153 1999 69 79
-
(1999)
Genetics
, vol.153
, pp. 69-79
-
-
Lambertson, D.1
Chen, L.2
Madura, K.3
-
40
-
-
84855443948
-
Noncovalent dimerization of ubiquitin
-
Z. Liu, W.P. Zhang, Q. Xing, X. Ren, M. Liu, and C. Tang Noncovalent dimerization of ubiquitin Angew. Chem. Int. Ed. Engl. 51 2012 469 472
-
(2012)
Angew. Chem. Int. Ed. Engl.
, vol.51
, pp. 469-472
-
-
Liu, Z.1
Zhang, W.P.2
Xing, Q.3
Ren, X.4
Liu, M.5
Tang, C.6
-
41
-
-
0037335034
-
How the ubiquitin-proteasome system controls transcription
-
M. Muratani, and W.P. Tansey How the ubiquitin-proteasome system controls transcription Nat. Rev. Mol. Cell Biol. 4 2003 192 201
-
(2003)
Nat. Rev. Mol. Cell Biol.
, vol.4
, pp. 192-201
-
-
Muratani, M.1
Tansey, W.P.2
-
42
-
-
17044420416
-
Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition
-
A. Ohno, J. Jee, K. Fujiwara, T. Tenno, N. Goda, H. Tochio, H. Kobayashi, H. Hiroaki, and M. Shirakawa Structure of the UBA domain of Dsk2p in complex with ubiquitin molecular determinants for ubiquitin recognition Structure 13 2005 521 532
-
(2005)
Structure
, vol.13
, pp. 521-532
-
-
Ohno, A.1
Jee, J.2
Fujiwara, K.3
Tenno, T.4
Goda, N.5
Tochio, H.6
Kobayashi, H.7
Hiroaki, H.8
Shirakawa, M.9
-
43
-
-
26944465404
-
Diverse polyubiquitin interaction properties of ubiquitin-associated domains
-
S. Raasi, R. Varadan, D. Fushman, and C.M. Pickart Diverse polyubiquitin interaction properties of ubiquitin-associated domains Nat. Struct. Mol. Biol. 12 2005 708 714
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 708-714
-
-
Raasi, S.1
Varadan, R.2
Fushman, D.3
Pickart, C.M.4
-
44
-
-
0037023716
-
Recognition of specific ubiquitin conjugates is important for the proteolytic functions of the ubiquitin-associated domain proteins Dsk2 and Rad23
-
H. Rao, and A. Sastry Recognition of specific ubiquitin conjugates is important for the proteolytic functions of the ubiquitin-associated domain proteins Dsk2 and Rad23 J. Biol. Chem. 277 2002 11691 11695
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 11691-11695
-
-
Rao, H.1
Sastry, A.2
-
45
-
-
0032971227
-
Degradation of cell proteins and the generation of MHC class I-presented peptides
-
K.L. Rock, and A.L. Goldberg Degradation of cell proteins and the generation of MHC class I-presented peptides Annu. Rev. Immunol. 17 1999 739 779
-
(1999)
Annu. Rev. Immunol.
, vol.17
, pp. 739-779
-
-
Rock, K.L.1
Goldberg, A.L.2
-
46
-
-
84860376787
-
Rpn1 and Rpn2 coordinate ubiquitin processing factors at proteasome
-
R. Rosenzweig, V. Bronner, D. Zhang, D. Fushman, and M.H. Glickman Rpn1 and Rpn2 coordinate ubiquitin processing factors at proteasome J. Biol. Chem. 287 2012 14659 14671
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 14659-14671
-
-
Rosenzweig, R.1
Bronner, V.2
Zhang, D.3
Fushman, D.4
Glickman, M.H.5
-
47
-
-
0141480905
-
Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a
-
K.S. Ryu, K.J. Lee, S.H. Bae, B.K. Kim, K.A. Kim, and B.S. Choi Binding surface mapping of intra- and interdomain interactions among hHR23B, ubiquitin, and polyubiquitin binding site 2 of S5a J. Biol. Chem. 278 2003 36621 36627
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 36621-36627
-
-
Ryu, K.S.1
Lee, K.J.2
Bae, S.H.3
Kim, B.K.4
Kim, K.A.5
Choi, B.S.6
-
48
-
-
0036295955
-
Ubiquitin-like proteins and Rpn10 play cooperative roles in ubiquitin-dependent proteolysis
-
Y. Saeki, A. Saitoh, A. Toh-e, and H. Yokosawa Ubiquitin-like proteins and Rpn10 play cooperative roles in ubiquitin-dependent proteolysis Biochem. Biophys. Res. Commun. 293 2002 986 992
-
(2002)
Biochem. Biophys. Res. Commun.
, vol.293
, pp. 986-992
-
-
Saeki, Y.1
Saitoh, A.2
Toh-E, A.3
Yokosawa, H.4
-
50
-
-
0034643336
-
Rapid degradation of a large fraction of newly synthesized proteins by proteasomes
-
U. Schubert, L.C. Antón, J. Gibbs, C.C. Norbury, J.W. Yewdell, and J.R. Bennink Rapid degradation of a large fraction of newly synthesized proteins by proteasomes Nature 404 2000 770 774
-
(2000)
Nature
, vol.404
, pp. 770-774
-
-
Schubert, U.1
Antón, L.C.2
Gibbs, J.3
Norbury, C.C.4
Yewdell, J.W.5
Bennink, J.R.6
-
51
-
-
68349093958
-
TALOS+: A hybrid method for predicting protein backbone torsion angles from NMR chemical shifts
-
Y. Shen, F. Delaglio, G. Cornilescu, and A. Bax TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts J. Biomol. NMR 44 2009 213 223
-
(2009)
J. Biomol. NMR
, vol.44
, pp. 213-223
-
-
Shen, Y.1
Delaglio, F.2
Cornilescu, G.3
Bax, A.4
-
52
-
-
84870704160
-
Recognition and cleavage of related to ubiquitin 1 (Rub1) and Rub1-ubiquitin chains by components of the ubiquitin-proteasome system
-
R.K. Singh, S. Zerath, O. Kleifeld, M. Scheffner, M.H. Glickman, and D. Fushman Recognition and cleavage of related to ubiquitin 1 (Rub1) and Rub1-ubiquitin chains by components of the ubiquitin-proteasome system Mol. Cell. Proteomics 11 2012 1595 1611
-
(2012)
Mol. Cell. Proteomics
, vol.11
, pp. 1595-1611
-
-
Singh, R.K.1
Zerath, S.2
Kleifeld, O.3
Scheffner, M.4
Glickman, M.H.5
Fushman, D.6
-
53
-
-
33750831567
-
Ddi1, a eukaryotic protein with the retroviral protease fold
-
R. Sirkis, J.E. Gerst, and D. Fass Ddi1, a eukaryotic protein with the retroviral protease fold J. Mol. Biol. 364 2006 376 387
-
(2006)
J. Mol. Biol.
, vol.364
, pp. 376-387
-
-
Sirkis, R.1
Gerst, J.E.2
Fass, D.3
-
54
-
-
0028847989
-
A ubiquitin mutant with specific defects in DNA repair and multiubiquitination
-
J. Spence, S. Sadis, A.L. Haas, and D. Finley A ubiquitin mutant with specific defects in DNA repair and multiubiquitination Mol. Cell. Biol. 15 1995 1265 1273
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 1265-1273
-
-
Spence, J.1
Sadis, S.2
Haas, A.L.3
Finley, D.4
-
55
-
-
25144507198
-
Mechanism of Lys48-linked polyubiquitin chain recognition by the Mud1 UBA domain
-
J.F. Trempe, N.R. Brown, E.D. Lowe, C. Gordon, I.D. Campbell, M.E. Noble, and J.A. Endicott Mechanism of Lys48-linked polyubiquitin chain recognition by the Mud1 UBA domain EMBO J. 24 2005 3178 3189
-
(2005)
EMBO J.
, vol.24
, pp. 3178-3189
-
-
Trempe, J.F.1
Brown, N.R.2
Lowe, E.D.3
Gordon, C.4
Campbell, I.D.5
Noble, M.E.6
Endicott, J.A.7
-
56
-
-
84923923313
-
The ubiquitin domain protein Ddi1 functions in DNA damage response mediated degradation of Ho endonuclease of yeast
-
R. Tzirkin, Y. Ivantsiv, E. Klyman, and D. Raveh The ubiquitin domain protein Ddi1 functions in DNA damage response mediated degradation of Ho endonuclease of yeast Yeast 20 2003 S144
-
(2003)
Yeast
, vol.20
, pp. S144
-
-
Tzirkin, R.1
Ivantsiv, Y.2
Klyman, E.3
Raveh, D.4
-
57
-
-
20444391345
-
Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain
-
R. Varadan, M. Assfalg, S. Raasi, C. Pickart, and D. Fushman Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain Mol. Cell 18 2005 687 698
-
(2005)
Mol. Cell
, vol.18
, pp. 687-698
-
-
Varadan, R.1
Assfalg, M.2
Raasi, S.3
Pickart, C.4
Fushman, D.5
-
58
-
-
3142566639
-
Multiubiquitin chain receptors define a layer of substrate selectivity in the ubiquitin-proteasome system
-
R. Verma, R. Oania, J. Graumann, and R.J. Deshaies Multiubiquitin chain receptors define a layer of substrate selectivity in the ubiquitin-proteasome system Cell 118 2004 99 110
-
(2004)
Cell
, vol.118
, pp. 99-110
-
-
Verma, R.1
Oania, R.2
Graumann, J.3
Deshaies, R.J.4
-
59
-
-
84864003919
-
Transfer of Ho endonuclease and Ufo1 to the proteasome by the UbL-UbA shuttle protein, Ddi1, analysed by complex formation in vitro
-
O. Voloshin, A. Bakhrat, S. Herrmann, and D. Raveh Transfer of Ho endonuclease and Ufo1 to the proteasome by the UbL-UbA shuttle protein, Ddi1, analysed by complex formation in vitro PLoS One 7 2012 e39210
-
(2012)
PLoS One
, vol.7
, pp. e39210
-
-
Voloshin, O.1
Bakhrat, A.2
Herrmann, S.3
Raveh, D.4
-
60
-
-
84901036068
-
Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin
-
E. Walinda, D. Morimoto, K. Sugase, T. Konuma, H. Tochio, and M. Shirakawa Solution structure of the ubiquitin-associated (UBA) domain of human autophagy receptor NBR1 and its interaction with ubiquitin and polyubiquitin J. Biol. Chem. 289 2014 13890 13902
-
(2014)
J. Biol. Chem.
, vol.289
, pp. 13890-13902
-
-
Walinda, E.1
Morimoto, D.2
Sugase, K.3
Konuma, T.4
Tochio, H.5
Shirakawa, M.6
-
61
-
-
9644260470
-
Ubiquitin family proteins and their relationship to the proteasome: A structural perspective
-
K.J. Walters, A.M. Goh, Q. Wang, G. Wagner, and P.M. Howley Ubiquitin family proteins and their relationship to the proteasome: a structural perspective Biochim. Biophys. Acta 1695 2004 73 87
-
(2004)
Biochim. Biophys. Acta
, vol.1695
, pp. 73-87
-
-
Walters, K.J.1
Goh, A.M.2
Wang, Q.3
Wagner, G.4
Howley, P.M.5
-
62
-
-
0034798985
-
Proteins containing the UBA domain are able to bind to multi-ubiquitin chains
-
C.R. Wilkinson, M. Seeger, R. Hartmann-Petersen, M. Stone, M. Wallace, C. Semple, and C. Gordon Proteins containing the UBA domain are able to bind to multi-ubiquitin chains Nat. Cell Biol. 3 2001 939 943
-
(2001)
Nat. Cell Biol.
, vol.3
, pp. 939-943
-
-
Wilkinson, C.R.1
Seeger, M.2
Hartmann-Petersen, R.3
Stone, M.4
Wallace, M.5
Semple, C.6
Gordon, C.7
-
63
-
-
0034715946
-
Proteasome inhibitors alter the orderly progression of DNA synthesis during S-phase in HeLa cells and lead to rereplication of DNA
-
R. Yamaguchi, and A. Dutta Proteasome inhibitors alter the orderly progression of DNA synthesis during S-phase in HeLa cells and lead to rereplication of DNA Exp. Cell Res. 261 2000 271 283
-
(2000)
Exp. Cell Res.
, vol.261
, pp. 271-283
-
-
Yamaguchi, R.1
Dutta, A.2
-
64
-
-
39649120317
-
Affinity makes the difference: Nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains
-
D. Zhang, S. Raasi, and D. Fushman Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains J. Mol. Biol. 377 2008 162 180
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 162-180
-
-
Zhang, D.1
Raasi, S.2
Fushman, D.3
-
65
-
-
72149114101
-
Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor
-
D. Zhang, T. Chen, I. Ziv, R. Rosenzweig, Y. Matiuhin, V. Bronner, M.H. Glickman, and D. Fushman Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor Mol. Cell 36 2009 1018 1033
-
(2009)
Mol. Cell
, vol.36
, pp. 1018-1033
-
-
Zhang, D.1
Chen, T.2
Ziv, I.3
Rosenzweig, R.4
Matiuhin, Y.5
Bronner, V.6
Glickman, M.H.7
Fushman, D.8
|