-
1
-
-
77956310020
-
Effects of gut microbiota on obesity and atherosclerosis via modulation of inflammation and lipid metabolism
-
PMID: 21050286
-
Caesar R, Fak F, Backhed F (2010) Effects of gut microbiota on obesity and atherosclerosis via modulation of inflammation and lipid metabolism. J Intern Med 268: 320-328. doi: 10.1111/j.1365-2796. 2010.02270.x PMID: 21050286
-
(2010)
J Intern Med
, vol.268
, pp. 320-328
-
-
Caesar, R.1
Fak, F.2
Backhed, F.3
-
2
-
-
84860569299
-
The human microbiome and its potential importance to pediatrics
-
PMID: 22473366
-
Johnson CL, Versalovic J (2012) The human microbiome and its potential importance to pediatrics. Pediatrics 129: 950-960. doi: 10.1542/peds.2011-2736 PMID: 22473366
-
(2012)
Pediatrics
, vol.129
, pp. 950-960
-
-
Johnson, C.L.1
Versalovic, J.2
-
3
-
-
72449145776
-
Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses
-
PMID: 19735274
-
Sjogren YM, Tomicic S, Lundberg A, Bottcher MF, Bjorksten B, et al. (2009) Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses. Clin Exp Allergy 39: 1842-1851. doi: 10.1111/j.1365-2222.2009.03326.x PMID: 19735274
-
(2009)
Clin Exp Allergy
, vol.39
, pp. 1842-1851
-
-
Sjogren, Y.M.1
Tomicic, S.2
Lundberg, A.3
Bottcher, M.F.4
Bjorksten, B.5
-
4
-
-
77951109198
-
Medically important bacterial-fungal interactions
-
PMID: 20348933
-
Peleg AY, Hogan DA, Mylonakis E (2010) Medically important bacterial-fungal interactions. Nature reviews Microbiology 8: 340-349. doi: 10.1038/nrmicro2313 PMID: 20348933
-
(2010)
Nature Reviews Microbiology
, vol.8
, pp. 340-349
-
-
Peleg, A.Y.1
Hogan, D.A.2
Mylonakis, E.3
-
5
-
-
84861964286
-
Interactions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis
-
PMID: 22674328
-
Iliev ID, Funari VA, Taylor KD, Nguyen Q, Reyes CN, et al. (2012) Interactions between commensal fungi and the C-type lectin receptor Dectin-1 influence colitis. Science 336: 1314-1317. doi: 10.1126/science.1221789 PMID: 22674328
-
(2012)
Science
, vol.336
, pp. 1314-1317
-
-
Iliev, I.D.1
Funari, V.A.2
Taylor, K.D.3
Nguyen, Q.4
Reyes, C.N.5
-
6
-
-
84902469583
-
Dysbiosis of gut fungal microbiota is associated with mucosal inflammation in Crohn's disease
-
PMID: 24275714
-
Li Q, Wang C, Tang C, He Q, Li N, et al. (2014) Dysbiosis of gut fungal microbiota is associated with mucosal inflammation in Crohn's disease. J Clin Gastroenterol. 48: 513-523. doi: 10.1097/MCG.0000000000000035 PMID: 24275714
-
(2014)
J Clin Gastroenterol
, vol.48
, pp. 513-523
-
-
Li, Q.1
Wang, C.2
Tang, C.3
He, Q.4
Li, N.5
-
7
-
-
84897392010
-
Oral mycobiome analysis of HIV-infected patients: Identification of Pichia as an antagonist of opportunistic fungi
-
PMID: 24626467
-
Mukherjee PK, Chandra J, Retuerto M, Sikaroodi M, Brown RE, et al. (2014) Oral mycobiome analysis of HIV-infected patients: identification of Pichia as an antagonist of opportunistic fungi. PLoS pathogens 10: e1003996. doi: 10.1371/journal.ppat.1003996 PMID: 24626467
-
(2014)
PLoS Pathogens
, vol.10
, pp. e1003996
-
-
Mukherjee, P.K.1
Chandra, J.2
Retuerto, M.3
Sikaroodi, M.4
Brown, R.E.5
-
8
-
-
84878360700
-
Fungal community analysis by high-throughput sequencing of amplified markers - A user's guide
-
PMID: 23534863
-
Lindahl BD, Nilsson RH, Tedersoo L, Abarenkov K, Carlsen T, et al. (2013) Fungal community analysis by high-throughput sequencing of amplified markers - a user's guide. New Phytol199: 288-299. doi: 10.1111/nph.12243 PMID: 23534863
-
(2013)
New Phytol
, vol.199
, pp. 288-299
-
-
Lindahl, B.D.1
Nilsson, R.H.2
Tedersoo, L.3
Abarenkov, K.4
Carlsen, T.5
-
9
-
-
84876187622
-
Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities
-
PMID: 23377949
-
Bokulich NA, Mills DA (2013) Improved selection of internal transcribed spacer-specific primers enables quantitative, ultra-high-throughput profiling of fungal communities. Appl Environ Microbiol 79: 2519-2526. doi: 10.1128/AEM.03870-12 PMID: 23377949
-
(2013)
Appl Environ Microbiol
, vol.79
, pp. 2519-2526
-
-
Bokulich, N.A.1
Mills, D.A.2
-
10
-
-
77954336858
-
ITS as an environmental DNA barcode for fungi: An in silico approach reveals potential PCR biases
-
PMID: 20618939
-
Bellemain E, Carlsen T, Brochmann C, Coissac E, Taberlet P, et al. (2010) ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases. BMC Microbiol 10: 189. doi: 10.1186/1471-2180-10-189 PMID: 20618939
-
(2010)
BMC Microbiol
, vol.10
, pp. 189
-
-
Bellemain, E.1
Carlsen, T.2
Brochmann, C.3
Coissac, E.4
Taberlet, P.5
-
11
-
-
84878344210
-
Meeting report: Fungal its workshop (October 2012)
-
PMID: 23961317
-
Bates ST, Ahrendt S, Bik HM, Bruns TD, Caporaso JG, et al. (2013) Meeting report: fungal its workshop (October 2012). Standards in Genomic Sciences 8: 118-123. doi: 10.4056/sigs.3737409 PMID: 23961317
-
(2013)
Standards in Genomic Sciences
, vol.8
, pp. 118-123
-
-
Bates, S.T.1
Ahrendt, S.2
Bik, H.M.3
Bruns, T.D.4
Caporaso, J.G.5
-
12
-
-
57649155508
-
Is there a molecular key to the level of 'biological species' in eukaryotes? A DNA guide
-
PMID: 18992828
-
Coleman AW (2009) Is there a molecular key to the level of 'biological species' in eukaryotes? A DNA guide. Mol Phylogenet Evol 50: 197-203. doi: 10.1016/j.ympev.2008.10.008 PMID: 18992828
-
(2009)
Mol Phylogenet Evol
, vol.50
, pp. 197-203
-
-
Coleman, A.W.1
-
13
-
-
75549088448
-
The ITS2 Database III - Sequences and structures for phylogeny
-
PMID: 19920122
-
Koetschan C, Forster F, Keller A, Schleicher T, Ruderisch B, et al. (2010) The ITS2 Database III - sequences and structures for phylogeny. Nucleic Acids Res 38: D275-279. doi: 10.1093/nar/gkp966 PMID: 19920122
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D275-D279
-
-
Koetschan, C.1
Forster, F.2
Keller, A.3
Schleicher, T.4
Ruderisch, B.5
-
14
-
-
84869886141
-
New primers to amplify the fungal ITS2 region - Evaluation by 454-sequencing of artificial and natural communities
-
PMID: 22738186
-
Ihrmark K, Bodeker IT, Cruz-Martinez K, Friberg H, Kubartova A, et al. (2012) New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities. FEMS Microbiol Ecol 82: 666-677. doi: 10.1111/j.1574-6941.2012.01437.x PMID: 22738186
-
(2012)
FEMS Microbiol Ecol
, vol.82
, pp. 666-677
-
-
Ihrmark, K.1
Bodeker, I.T.2
Cruz-Martinez, K.3
Friberg, H.4
Kubartova, A.5
-
15
-
-
67149109995
-
The ITS region as a target for characterization of fungal communities using emerging sequencing technologies
-
PMID: 19459974
-
Nilsson RH, Ryberg M, Abarenkov K, Sjokvist E, Kristiansson E (2009) The ITS region as a target for characterization of fungal communities using emerging sequencing technologies. FEMS Microbiol Lett 296: 97-101. doi: 10.1111/j.1574-6968.2009.01618.x PMID: 19459974
-
(2009)
FEMS Microbiol Lett
, vol.296
, pp. 97-101
-
-
Nilsson, R.H.1
Ryberg, M.2
Abarenkov, K.3
Sjokvist, E.4
Kristiansson, E.5
-
16
-
-
0001889290
-
Systemic candidiasis and other fungal infections in the newborn
-
Bendel CM, Hostetter MK (1994) Systemic candidiasis and other fungal infections in the newborn. Semin Pediat Infect Dis 5: 35-41.
-
(1994)
Semin Pediat Infect Dis
, vol.5
, pp. 35-41
-
-
Bendel, C.M.1
Hostetter, M.K.2
-
17
-
-
33644633064
-
Distinctive distribution of pathogens associated with peritonitis in neonates with focal intestinal perforation compared with necrotizing enterocolitis
-
PMID: 15995004
-
Coates EW, Karlowicz MG, Croitoru DP, Buescher ES (2005) Distinctive distribution of pathogens associated with peritonitis in neonates with focal intestinal perforation compared with necrotizing enterocolitis. Pediatrics 116: e241-246. PMID: 15995004
-
(2005)
Pediatrics
, vol.116
, pp. e241-e246
-
-
Coates, E.W.1
Karlowicz, M.G.2
Croitoru, D.P.3
Buescher, E.S.4
-
18
-
-
79954590796
-
Candida species differ in their interactions with immature human gastrointestinal epithelial cells
-
PMID: 21283049
-
Falgier C, Kegley S, Podgorski H, Heisel T, Storey K, et al. (2011) Candida species differ in their interactions with immature human gastrointestinal epithelial cells. Pediatr Res 69: 384-389. doi: 10.1203/PDR.0b013e31821269d5 PMID: 21283049
-
(2011)
Pediatr Res
, vol.69
, pp. 384-389
-
-
Falgier, C.1
Kegley, S.2
Podgorski, H.3
Heisel, T.4
Storey, K.5
-
19
-
-
55949102931
-
Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people
-
PMID: 18974948
-
Nam YD, Chang HW, Kim KH, Roh SW, Kim MS, et al. (2008) Bacterial, archaeal, and eukaryal diversity in the intestines of Korean people. J Microbiol 46: 491-501. doi: 10.1007/s12275-008-0199-7 PMID: 18974948
-
(2008)
J Microbiol
, vol.46
, pp. 491-501
-
-
Nam, Y.D.1
Chang, H.W.2
Kim, K.H.3
Roh, S.W.4
Kim, M.S.5
-
20
-
-
57349131283
-
Micro-eukaryotic diversity of the human distal gut microbiota: Qualitative assessment using culture-dependent and-independent analysis of faeces
-
PMID: 18670396
-
Scanlan PD, Marchesi JR (2008) Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and-independent analysis of faeces. Isme J 2: 1183-1193. doi: 10.1038/ismej.2008.76 PMID: 18670396
-
(2008)
Isme J
, vol.2
, pp. 1183-1193
-
-
Scanlan, P.D.1
Marchesi, J.R.2
-
21
-
-
0030037019
-
The role of the gastrointestinal tract in hematogenous candidiasis: From the laboratory to the bedside
-
PMID: 8722833
-
Cole GT, Halawa AA, Anaissie EJ (1996) The role of the gastrointestinal tract in hematogenous candidiasis: from the laboratory to the bedside. Clin Infect Dis 22 Suppl 2: S73-88. PMID: 8722833
-
(1996)
Clin Infect Dis
, vol.22
, pp. S73-S88
-
-
Cole, G.T.1
Halawa, A.A.2
Anaissie, E.J.3
-
22
-
-
0025989934
-
Putative virulence factors of Candida albicans
-
PMID: 1741614
-
Cutler JE (1991) Putative virulence factors of Candida albicans. Annu Rev Microbiol 45: 187-218. PMID: 1741614
-
(1991)
Annu Rev Microbiol
, vol.45
, pp. 187-218
-
-
Cutler, J.E.1
-
23
-
-
0028050465
-
Pathogenesis of Candida infections
-
PMID: 8077502
-
Odds FC (1994) Pathogenesis of Candida infections. J Am Acad Dermatol 31: S2-5. PMID: 8077502
-
(1994)
J Am Acad Dermatol
, vol.31
, pp. S2-S5
-
-
Odds, F.C.1
-
24
-
-
84868459501
-
FungiQuant: A broad-coverage fungal quantitative real-time PCR assay
-
PMID: 23136846
-
Liu CM, Kachur S, Dwan MG, Abraham AG, Aziz M, et al. (2012) FungiQuant: a broad-coverage fungal quantitative real-time PCR assay. BMC Microbiol 12: 255. doi: 10.1186/1471-2180-12-255 PMID: 23136846
-
(2012)
BMC Microbiol
, vol.12
, pp. 255
-
-
Liu, C.M.1
Kachur, S.2
Dwan, M.G.3
Abraham, A.G.4
Aziz, M.5
-
25
-
-
33847114442
-
Trends in the epidemiology of invasive fungal infections
-
Warnock DW (2007) Trends in the epidemiology of invasive fungal infections. Jpn J Med Mycol 48: 1-12.
-
(2007)
Jpn J Med Mycol
, vol.48
, pp. 1-12
-
-
Warnock, D.W.1
-
26
-
-
36549082029
-
Multiplex PCR identification of eight clinically relevant Candida species
-
PMID: 17885953
-
Carvalho A, Costa-De-Oliveira S, Martins ML, Pina-Vaz C, Rodrigues AG, et al. (2007) Multiplex PCR identification of eight clinically relevant Candida species. Med Mycol 45: 619-627. PMID: 17885953
-
(2007)
Med Mycol
, vol.45
, pp. 619-627
-
-
Carvalho, A.1
Costa-De-Oliveira, S.2
Martins, M.L.3
Pina-Vaz, C.4
Rodrigues, A.G.5
-
28
-
-
34250186544
-
Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes
-
PMID: 17419877
-
van het Hoog M, Rast TJ, Martchenko M, Grindle S, Dignard D, et al. (2007) Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes. Genome Biol 8: R52. PMID: 17419877
-
(2007)
Genome Biol
, vol.8
, pp. R52
-
-
Van Het Hoog, M.1
Rast, T.J.2
Martchenko, M.3
Grindle, S.4
Dignard, D.5
-
29
-
-
2442629464
-
The diploid genome sequence of Candida albicans
-
PMID: 15123810
-
Jones T, Federspiel NA, Chibana H, Dungan J, Kalman S, et al. (2004) The diploid genome sequence of Candida albicans. Proc Natl Acad Sci USA 101: 7329-7334. PMID: 15123810
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 7329-7334
-
-
Jones, T.1
Federspiel, N.A.2
Chibana, H.3
Dungan, J.4
Kalman, S.5
-
30
-
-
0027373419
-
Variations in the number of ribosomal DNA units in morphological mutants and normal strains of Candida albicans and in normal strains of Saccharomyces cerevisiae
-
PMID: 8226665
-
Rustchenko EP, Curran TM, Sherman F (1993) Variations in the number of ribosomal DNA units in morphological mutants and normal strains of Candida albicans and in normal strains of Saccharomyces cerevisiae. J Bacteriol 175: 7189-7199. PMID: 8226665
-
(1993)
J Bacteriol
, vol.175
, pp. 7189-7199
-
-
Rustchenko, E.P.1
Curran, T.M.2
Sherman, F.3
-
31
-
-
84887176578
-
Evaluation of molecular community analysis methods for discerning fecal sources and human waste
-
PMID: 23880215
-
Cao Y, Van De Werfhorst LC, Dubinsky EA, Badgley BD, Sadowsky MJ, et al. (2013) Evaluation of molecular community analysis methods for discerning fecal sources and human waste. Water Res 47: 6862-6872. doi: 10.1016/j.watres.2013.02.061 PMID: 23880215
-
(2013)
Water Res
, vol.47
, pp. 6862-6872
-
-
Cao, Y.1
Van De Werfhorst, L.C.2
Dubinsky, E.A.3
Badgley, B.D.4
Sadowsky, M.J.5
-
32
-
-
84866429095
-
Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant
-
PMID: 22798321
-
Charlson ES, Diamond JM, Bittinger K, Fitzgerald AS, Yadav A, et al. (2012) Lung-enriched organisms and aberrant bacterial and fungal respiratory microbiota after lung transplant. Am J Resp Crit Care 186: 536-545. doi: 10.1164/rccm.201204-0693OC PMID: 22798321
-
(2012)
Am J Resp Crit Care
, vol.186
, pp. 536-545
-
-
Charlson, E.S.1
Diamond, J.M.2
Bittinger, K.3
Fitzgerald, A.S.4
Yadav, A.5
-
33
-
-
82955201588
-
Beyond bacteria: A study of the enteric microbial consortium in extremely low birth weight infants
-
PMID: 22174751
-
LaTuga MS, Ellis JC, Cotton CM, Goldberg RN, Wynn JL, et al. (2011) Beyond bacteria: a study of the enteric microbial consortium in extremely low birth weight infants. PLOS ONE 6: e27858. doi: 10.1371/journal.pone.0027858 PMID: 22174751
-
(2011)
PLOS ONE
, vol.6
, pp. e27858
-
-
LaTuga, M.S.1
Ellis, J.C.2
Cotton, C.M.3
Goldberg, R.N.4
Wynn, J.L.5
-
34
-
-
79960602955
-
Candida africana and its closest relatives
-
PMID: 20667001
-
Romeo O, Criseo G (2011) Candida africana and its closest relatives. Mycoses 54: 475-486. doi: 10.1111/j.1439-0507.2010.01939.x PMID: 20667001
-
(2011)
Mycoses
, vol.54
, pp. 475-486
-
-
Romeo, O.1
Criseo, G.2
-
35
-
-
0036200361
-
Trends in antifungal susceptibility of Candida spp. isolated from pediatric and adult patients with bloodstream infections: SENTRY Antimicrobial Surveillance Program, 1997 to 2000
-
PMID: 11880404
-
Pfaller MA, Diekema DJ, Jones RN, Messer SA, Hollis RJ (2002) Trends in antifungal susceptibility of Candida spp. isolated from pediatric and adult patients with bloodstream infections: SENTRY Antimicrobial Surveillance Program, 1997 to 2000. J Clin Microbiol 40: 852-856. PMID: 11880404
-
(2002)
J Clin Microbiol
, vol.40
, pp. 852-856
-
-
Pfaller, M.A.1
Diekema, D.J.2
Jones, R.N.3
Messer, S.A.4
Hollis, R.J.5
-
36
-
-
0008105903
-
Species of Leptosphaerulina on forage plants
-
Graham JH, Luttrell ES (1961) Species of Leptosphaerulina on forage plants. Phytopathology 51: 680-693.
-
(1961)
Phytopathology
, vol.51
, pp. 680-693
-
-
Graham, J.H.1
Luttrell, E.S.2
-
37
-
-
84876020288
-
Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation
-
PMID: 23303777
-
Costello M, Pugh TJ, Fennell TJ, Stewart C, Lichtenstein L, et al. (2013) Discovery and characterization of artifactual mutations in deep coverage targeted capture sequencing data due to oxidative DNA damage during sample preparation. Nucleic Acids Res 41: e67. doi: 10.1093/nar/gks1443 PMID: 23303777
-
(2013)
Nucleic Acids Res
, vol.41
, pp. e67
-
-
Costello, M.1
Pugh, T.J.2
Fennell, T.J.3
Stewart, C.4
Lichtenstein, L.5
-
38
-
-
84866065801
-
Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing
-
PMID: 22970184
-
Lee CK, Herbold CW, Polson SW, Wommack KE, Williamson SJ, et al. (2012) Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing. PLOS ONE 7: e44224. doi: 10.1371/journal.pone.0044224 PMID: 22970184
-
(2012)
PLOS ONE
, vol.7
, pp. e44224
-
-
Lee, C.K.1
Herbold, C.W.2
Polson, S.W.3
Wommack, K.E.4
Williamson, S.J.5
-
39
-
-
80052226692
-
Sequence-specific error profile of Illumina sequencers
-
PMID: 21576222
-
Nakamura K, Oshima T, Morimoto T, Ikeda S, Yoshikawa H, et al. (2011) Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res 39: e90. doi: 10.1093/nar/gkr344 PMID: 21576222
-
(2011)
Nucleic Acids Res
, vol.39
, pp. e90
-
-
Nakamura, K.1
Oshima, T.2
Morimoto, T.3
Ikeda, S.4
Yoshikawa, H.5
-
40
-
-
84922778461
-
Parsing ecological signal from noise in next generation amplicon sequencing
-
PMID: 25557489
-
Nguyen NH, Smith D, Peay K, Kennedy P (2014) Parsing ecological signal from noise in next generation amplicon sequencing. New Phytol. doi: 10.1111/nph.12923 PMID: 25557489
-
(2014)
New Phytol
-
-
Nguyen, N.H.1
Smith, D.2
Peay, K.3
Kennedy, P.4
-
41
-
-
19344368762
-
Representative sampling for reliable data analysis: Theory of sampling
-
Petersen L, Minkkinen P, H EK (2005) Representative sampling for reliable data analysis: theory of sampling. Chemometr Intell Lab 77: 261-277.
-
(2005)
Chemometr Intell Lab
, vol.77
, pp. 261-277
-
-
Petersen, L.1
Minkkinen, P.2
H, E.K.3
-
42
-
-
33646539781
-
Multilocus sequence typing reveals intrafamilial transmission and microevolutions of Candida albicans isolates from the human digestive tract
-
PMID: 16672411
-
Bougnoux ME, Diogo D, Francois N, Sendid B, Veirmeire S, et al. (2006) Multilocus sequence typing reveals intrafamilial transmission and microevolutions of Candida albicans isolates from the human digestive tract. J Clin Microbiol 44: 1810-1820. PMID: 16672411
-
(2006)
J Clin Microbiol
, vol.44
, pp. 1810-1820
-
-
Bougnoux, M.E.1
Diogo, D.2
Francois, N.3
Sendid, B.4
Veirmeire, S.5
-
43
-
-
0016357857
-
Effect of diet on human fecal flora: Comparison of Japanese and American diets
-
PMID: 4432829
-
Finegold SM, Attebery HR, Sutter VL (1974) Effect of diet on human fecal flora: comparison of Japanese and American diets. Am J Clin Nutr 27: 1456-1469. PMID: 4432829
-
(1974)
Am J Clin Nutr
, vol.27
, pp. 1456-1469
-
-
Finegold, S.M.1
Attebery, H.R.2
Sutter, V.L.3
-
44
-
-
39349107697
-
Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea
-
PMID: 18199029
-
Chang JY, Antonopoulos DA, Kalra A, Tonelli A, Khalife WT, et al. (2008) Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. J Infect Dis 197: 435-438. doi: 10.1086/525047 PMID: 18199029
-
(2008)
J Infect Dis
, vol.197
, pp. 435-438
-
-
Chang, J.Y.1
Antonopoulos, D.A.2
Kalra, A.3
Tonelli, A.4
Khalife, W.T.5
-
45
-
-
78049494788
-
Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome
-
PMID: 20352091
-
Jakobsson HE, Jernberg C, Andersson AF, Sjolund-Karlsson M, Jansson JK, et al. (2010) Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLOS ONE 5: e9836. doi: 10.1371/journal.pone.0009836 PMID: 20352091
-
(2010)
PLOS ONE
, vol.5
, pp. e9836
-
-
Jakobsson, H.E.1
Jernberg, C.2
Andersson, A.F.3
Sjolund-Karlsson, M.4
Jansson, J.K.5
-
46
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
PMID: 19043404
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, et al. (2009) A core gut microbiome in obese and lean twins. Nature 457: 480-484. doi: 10.1038/nature07540 PMID: 19043404
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
-
47
-
-
84875150368
-
Gut microbiota of healthy Canadian infants: Profiles by mode of delivery and infant diet at 4 months
-
Azad MB, Konya T, Maughan H, Guttman DS, Field CJ, et al. (2013) Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months. Can Med Assoc J 185: 385-394.
-
(2013)
Can Med Assoc J
, vol.185
, pp. 385-394
-
-
Azad, M.B.1
Konya, T.2
Maughan, H.3
Guttman, D.S.4
Field, C.J.5
-
48
-
-
77149168462
-
Yeast species associated with wine grapes in China
-
PMID: 20116124
-
Li SS, Cheng C, Li Z, Chen JY, Yan B, et al. (2010) Yeast species associated with wine grapes in China. Int J Food Microbiol 138: 85-90. doi: 10.1016/j.ijfoodmicro.2010.01.009 PMID: 20116124
-
(2010)
Int J Food Microbiol
, vol.138
, pp. 85-90
-
-
Li, S.S.1
Cheng, C.2
Li, Z.3
Chen, J.Y.4
Yan, B.5
-
49
-
-
84905266526
-
Three clustered cases of candidemia caused by Candida quercitrusa and mycological characteristics of this novel species
-
PMID: 24696025
-
Xiao M, Wang H, Lu J, Chen SC, Kong F, et al. (2014) Three clustered cases of candidemia caused by Candida quercitrusa and mycological characteristics of this novel species. J Clin Microbiol 52: 3044-3048. doi: 10.1128/JCM.00246-14 PMID: 24696025
-
(2014)
J Clin Microbiol
, vol.52
, pp. 3044-3048
-
-
Xiao, M.1
Wang, H.2
Lu, J.3
Chen, S.C.4
Kong, F.5
-
50
-
-
83655193494
-
Microbial influences on epithelial integrity and immune function as a basis for inflammatory diseases
-
PMID: 22168419
-
Macia L, Thorburn AN, Binge LC, Marino E, Rogers KE, et al. (2012) Microbial influences on epithelial integrity and immune function as a basis for inflammatory diseases. Immunol Rev 245: 164-176. doi: 10.1111/j.1600-065X.2011.01080.x PMID: 22168419
-
(2012)
Immunol Rev
, vol.245
, pp. 164-176
-
-
Macia, L.1
Thorburn, A.N.2
Binge, L.C.3
Marino, E.4
Rogers, K.E.5
-
51
-
-
84866167497
-
Reciprocal interactions of the intestinal microbiota and immune system
-
PMID: 22972296
-
Maynard CL, Elson CO, Hatton RD, Weaver CT (2012) Reciprocal interactions of the intestinal microbiota and immune system. Nature 489: 231-241. doi: 10.1038/nature11551 PMID: 22972296
-
(2012)
Nature
, vol.489
, pp. 231-241
-
-
Maynard, C.L.1
Elson, C.O.2
Hatton, R.D.3
Weaver, C.T.4
-
52
-
-
0035893122
-
Revisiting the source of candidemia: Skin or gut?
-
PMID: 11702290
-
Nucci M, Anaissie E (2001) Revisiting the source of candidemia: skin or gut? Clin Infect Dis 33: 1959-1967. PMID: 11702290
-
(2001)
Clin Infect Dis
, vol.33
, pp. 1959-1967
-
-
Nucci, M.1
Anaissie, E.2
-
53
-
-
0030040830
-
Microbial translocation in neonates and infants receiving long-term parenteral nutrition
-
PMID: 8611075
-
Pierro A, van Saene HK, Donnell SC, Hughes J, Ewan C, et al. (1996) Microbial translocation in neonates and infants receiving long-term parenteral nutrition. Arch Surg 131: 176-179. PMID: 8611075
-
(1996)
Arch Surg
, vol.131
, pp. 176-179
-
-
Pierro, A.1
Van Saene, H.K.2
Donnell, S.C.3
Hughes, J.4
Ewan, C.5
-
54
-
-
78149287622
-
The surface protein HvgA mediates group B streptococcus hypervirulence and meningeal tropism in neonates
-
PMID: 20956545
-
Tazi A, Disson O, Bellais S, Bouaboud A, Dmytruk N, et al. (2010) The surface protein HvgA mediates group B streptococcus hypervirulence and meningeal tropism in neonates. J Exp Med 207: 2313-2322. doi: 10.1084/jem.20092594 PMID: 20956545
-
(2010)
J Exp Med
, vol.207
, pp. 2313-2322
-
-
Tazi, A.1
Disson, O.2
Bellais, S.3
Bouaboud, A.4
Dmytruk, N.5
-
55
-
-
0034001629
-
Risk factors for candidemia in neonatal intensive care unit patients. The national epidemiology of mycosis survey study group
-
PMID: 10783022
-
Saiman L, Ludington E, Pfaller M, Rangel-Frausto S, Wiblin RT, et al. (2000) Risk factors for candidemia in neonatal intensive care unit patients. The national epidemiology of mycosis survey study group. Pediatr Infect Dis J 19: 319-324. PMID: 10783022
-
(2000)
Pediatr Infect Dis J
, vol.19
, pp. 319-324
-
-
Saiman, L.1
Ludington, E.2
Pfaller, M.3
Rangel-Frausto, S.4
Wiblin, R.T.5
-
56
-
-
0035007355
-
Hypothesis: Inappropriate colonization of the premature intestine can cause neonatal necrotizing enterocolitis
-
PMID: 11387237
-
Claud EC, Walker WA (2001) Hypothesis: inappropriate colonization of the premature intestine can cause neonatal necrotizing enterocolitis. Faseb J 15: 1398-1403. PMID: 11387237
-
(2001)
Faseb J
, vol.15
, pp. 1398-1403
-
-
Claud, E.C.1
Walker, W.A.2
-
57
-
-
4344632902
-
Early intestinal bacterial colonization and necrotizing enterocolitis in premature infants: The putative role of Clostridium
-
PMID: 15201403
-
de la Cochetiere MF, Piloquet H, des Robert C, Darmaun D, Galmiche JP, et al. (2004) Early intestinal bacterial colonization and necrotizing enterocolitis in premature infants: the putative role of Clostridium. Pediatr Res 56: 366-370. PMID: 15201403
-
(2004)
Pediatr Res
, vol.56
, pp. 366-370
-
-
De La Cochetiere, M.F.1
Piloquet, H.2
Des Robert, C.3
Darmaun, D.4
Galmiche, J.P.5
-
58
-
-
36849024430
-
Maternal factors in extremely low birth weight infants who develop spontaneous intestinal perforation
-
PMID: 17998314
-
Ragouilliaux CJ, Keeney SE, Hawkins HK, Rowen JL (2007) Maternal factors in extremely low birth weight infants who develop spontaneous intestinal perforation. Pediatrics 120: e1458-1464. PMID: 17998314
-
(2007)
Pediatrics
, vol.120
, pp. e1458-e1464
-
-
Ragouilliaux, C.J.1
Keeney, S.E.2
Hawkins, H.K.3
Rowen, J.L.4
-
59
-
-
46349085971
-
Fungi and inflammatory bowel diseases: Alterations of composition and diversity
-
PMID: 18584522
-
Ott SJ, Kuhbacher T, Musfeldt M, Rosenstiel P, Hellmig S, et al. (2008) Fungi and inflammatory bowel diseases: Alterations of composition and diversity. Scand J Gastroentero 43: 831-841. doi: 10.1080/00365520801935434 PMID: 18584522
-
(2008)
Scand J Gastroentero
, vol.43
, pp. 831-841
-
-
Ott, S.J.1
Kuhbacher, T.2
Musfeldt, M.3
Rosenstiel, P.4
Hellmig, S.5
-
60
-
-
77949396850
-
Yeasts in the gut: From commensals to infectious agents
-
PMID: 20062581
-
Schulze J, Sonnenborn U (2009) Yeasts in the gut: from commensals to infectious agents. Dtsch Arztebl Int 106: 837-842. doi: 10.3238/arztebl.2009.0837 PMID: 20062581
-
(2009)
Dtsch Arztebl Int
, vol.106
, pp. 837-842
-
-
Schulze, J.1
Sonnenborn, U.2
-
61
-
-
0001083002
-
Getting Started with Yeast. Guide to Yeast Genetics and Molecular Biology
-
Fink GR and Guthrie C (editors). Harcourt Brace Jovanovich (publisher)
-
Sherman F (1991) Getting Started with Yeast. Guide to Yeast Genetics and Molecular Biology. Method Enzymol. Fink GR and Guthrie C (editors). Harcourt Brace Jovanovich (publisher).
-
(1991)
Method Enzymol
-
-
Sherman, F.1
-
62
-
-
0032836267
-
Importance of selective media for recovery of yeasts from clinical specimens
-
PMID: 10523586
-
Sandven P, Lassen J (1999) Importance of selective media for recovery of yeasts from clinical specimens. J Clinical Microbiol 37: 3731-3732. PMID: 10523586
-
(1999)
J Clinical Microbiol
, vol.37
, pp. 3731-3732
-
-
Sandven, P.1
Lassen, J.2
-
63
-
-
0021742042
-
Isolation of the Candida albicans gene for orotidine-5′-phosphate decarboxylase by complementation of S. cerevisiae ura3 and E. coli pyrF mutations
-
PMID: 6394964
-
Gillum AM, Tsay EY, Kirsch DR (1984) Isolation of the Candida albicans gene for orotidine-5′-phosphate decarboxylase by complementation of S. cerevisiae ura3 and E. coli pyrF mutations. Mol Gen Genet 198: 179-182. PMID: 6394964
-
(1984)
Mol Gen Genet
, vol.198
, pp. 179-182
-
-
Gillum, A.M.1
Tsay, E.Y.2
Kirsch, D.R.3
-
64
-
-
0025976158
-
The Tn3 beta-lactamase gene acts as a hotspot for meiotic recombination in yeast
-
PMID: 1849855
-
Stapleton A, Petes TD (1991) The Tn3 beta-lactamase gene acts as a hotspot for meiotic recombination in yeast. Genetics 127: 39-51. PMID: 1849855
-
(1991)
Genetics
, vol.127
, pp. 39-51
-
-
Stapleton, A.1
Petes, T.D.2
-
65
-
-
0029817219
-
Human fetal enterocytes in vitro: Modulation of the phenotype by extracellular matrix
-
PMID: 8755542
-
Sanderson IR, Ezzell RM, Kedinger M, Erlanger M, Xu ZX, et al. (1996) Human fetal enterocytes in vitro: modulation of the phenotype by extracellular matrix. Proc Natl Acad Sci USA 93: 7717-7722. PMID: 8755542
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 7717-7722
-
-
Sanderson, I.R.1
Ezzell, R.M.2
Kedinger, M.3
Erlanger, M.4
Xu, Z.X.5
-
66
-
-
64149097786
-
The MIQE guidelines: Minimum information for publication of quantitative real-time PCR experiments
-
PMID: 19246619
-
Bustin SA, Benes V, Garson JA, Hellemans J, Huggett J, et al. (2009) The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin Chem 55: 611-622. doi: 10. 1373/clinchem.2008.112797 PMID: 19246619
-
(2009)
Clin Chem
, vol.55
, pp. 611-622
-
-
Bustin, S.A.1
Benes, V.2
Garson, J.A.3
Hellemans, J.4
Huggett, J.5
-
67
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
PMID: 16820507
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, et al. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microb 72: 5069-5072. PMID: 16820507
-
(2006)
Appl Environ Microb
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
-
68
-
-
77957244650
-
Search and clustering orders of magnitude faster than BLAST
-
PMID: 20709691
-
Edgar RC (2010) Search and clustering orders of magnitude faster than BLAST. Bioinformatics 26: 2460-2461. doi: 10.1093/bioinformatics/btq461 PMID: 20709691
-
(2010)
Bioinformatics
, vol.26
, pp. 2460-2461
-
-
Edgar, R.C.1
-
69
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
PMID: 15034147
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797. PMID: 15034147
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
70
-
-
80053651587
-
GenBank
-
PMID: 23193287
-
Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, et al. (2013) GenBank. Nucleic Acids Res 41: D36-42. doi: 10.1093/nar/gks1195 PMID: 23193287
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D36-D42
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
-
71
-
-
84875098273
-
Comparison of sequencing utility programs
-
Aronesty E (2013) Comparison of sequencing utility programs. The Open Bioinformatics Journal 7: 1-8.
-
(2013)
The Open Bioinformatics Journal
, vol.7
, pp. 1-8
-
-
Aronesty, E.1
-
72
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
PMID: 19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microb 75: 7537-7541. doi: 10.1128/AEM.01541-09 PMID: 19801464
-
(2009)
Appl Environ Microb
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
-
73
-
-
77955251092
-
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
-
PMID: 20236171
-
Huse SM, Welch D, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12: 1889-1898. doi: 10.1111/j.1462-2920.2010.02193.x PMID: 20236171
-
(2010)
Environ Microbiol
, vol.12
, pp. 1889-1898
-
-
Huse, S.M.1
Welch, D.2
Morrison, H.G.3
Sogin, M.L.4
|