-
1
-
-
0037248593
-
A conserved RING finger protein required for histone H2B monoubiquitination and cell size control
-
Hwang, W. W., Venkatasubrahmanyam, S., Ianculescu, A. G., Tong, A., Boone, C., and Madhani, H. D. (2003) A conserved RING finger protein required for histone H2B monoubiquitination and cell size control. Mol. Cell 11, 261-266
-
(2003)
Mol. Cell
, vol.11
, pp. 261-266
-
-
Hwang, W.W.1
Venkatasubrahmanyam, S.2
Ianculescu, A.G.3
Tong, A.4
Boone, C.5
Madhani, H.D.6
-
2
-
-
65249105512
-
RAD6-mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells
-
Kim, J., Guermah, M., McGinty, R. K., Lee, J. S., Tang, Z., Milne, T. A., Shilatifard, A., Muir, T. W., and Roeder, R. G. (2009) RAD6-mediated transcription-coupled H2B ubiquitylation directly stimulates H3K4 methylation in human cells. Cell 137, 459-471
-
(2009)
Cell
, vol.137
, pp. 459-471
-
-
Kim, J.1
Guermah, M.2
McGinty, R.K.3
Lee, J.S.4
Tang, Z.5
Milne, T.A.6
Shilatifard, A.7
Muir, T.W.8
Roeder, R.G.9
-
3
-
-
0034695456
-
Rad6-dependent ubiquitination of histone H2B in yeast
-
Robzyk, K., Recht, J., and Osley, M. A. (2000) Rad6-dependent ubiquitination of histone H2B in yeast. Science 287, 501-504
-
(2000)
Science
, vol.287
, pp. 501-504
-
-
Robzyk, K.1
Recht, J.2
Osley, M.A.3
-
4
-
-
0037248944
-
Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter
-
Wood, A., Krogan, N. J., Dover, J., Schneider, J., Heidt, J., Boateng, M. A., Dean, K., Golshani, A., Zhang, Y., Greenblatt, J. F., Johnston, M., and Shilatifard, A. (2003) Bre1, an E3 ubiquitin ligase required for recruitment and substrate selection of Rad6 at a promoter. Mol. Cell 11, 267-274
-
(2003)
Mol. Cell
, vol.11
, pp. 267-274
-
-
Wood, A.1
Krogan, N.J.2
Dover, J.3
Schneider, J.4
Heidt, J.5
Boateng, M.A.6
Dean, K.7
Golshani, A.8
Zhang, Y.9
Greenblatt, J.F.10
Johnston, M.11
Shilatifard, A.12
-
5
-
-
11844297340
-
Histone H2B ubiquitylation is associated with elongating RNA polymerase II
-
Xiao, T., Kao, C. F., Krogan, N. J., Sun, Z. W., Greenblatt, J. F., Osley, M. A., and Strahl, B. D. (2005) Histone H2B ubiquitylation is associated with elongating RNA polymerase II. Mol. Cell. Biol. 25, 637-651
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 637-651
-
-
Xiao, T.1
Kao, C.F.2
Krogan, N.J.3
Sun, Z.W.4
Greenblatt, J.F.5
Osley, M.A.6
Strahl, B.D.7
-
6
-
-
27944454433
-
Monoubiquitination of human histone H2B: The factors involved and their roles in HOX gene regulation
-
Zhu, B., Zheng, Y., Pham, A. D., Mandal, S. S., Erdjument-Bromage, H., Tempst, P., and Reinberg, D. (2005) Monoubiquitination of human histone H2B: the factors involved and their roles in HOX gene regulation. Mol. Cell 20, 601-611
-
(2005)
Mol. Cell
, vol.20
, pp. 601-611
-
-
Zhu, B.1
Zheng, Y.2
Pham, A.D.3
Mandal, S.S.4
Erdjument-Bromage, H.5
Tempst, P.6
Reinberg, D.7
-
7
-
-
40849106789
-
Histone ubiquitination: Triggering gene activity
-
Weake, V. M., and Workman, J. L. (2008) Histone ubiquitination: triggering gene activity. Mol. Cell 29, 653-663
-
(2008)
Mol. Cell
, vol.29
, pp. 653-663
-
-
Weake, V.M.1
Workman, J.L.2
-
8
-
-
1842411320
-
Crystal structure of the nucleosome core particle at 2.8 A resolution
-
Luger, K., Mäder, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J. (1997) Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 389, 251-260
-
(1997)
Nature
, vol.389
, pp. 251-260
-
-
Luger, K.1
Mäder, A.W.2
Richmond, R.K.3
Sargent, D.F.4
Richmond, T.J.5
-
9
-
-
84863302006
-
Shaping the landscape: Mechanistic consequences of ubiquitin modification of chromatin
-
Braun, S., and Madhani, H. D. (2012) Shaping the landscape: mechanistic consequences of ubiquitin modification of chromatin. EMBO Rep. 13, 619-630
-
(2012)
EMBO Rep.
, vol.13
, pp. 619-630
-
-
Braun, S.1
Madhani, H.D.2
-
10
-
-
80155198826
-
Recognition of UbcH5c and the nucleosome by the Bmi1/Ring1b ubiquitin ligase complex
-
Bentley, M. L., Corn, J. E., Dong, K. C., Phung, Q., Cheung, T. K., and Cochran, A. G. (2011) Recognition of UbcH5c and the nucleosome by the Bmi1/Ring1b ubiquitin ligase complex. EMBO J. 30, 3285-3297
-
(2011)
EMBO J.
, vol.30
, pp. 3285-3297
-
-
Bentley, M.L.1
Corn, J.E.2
Dong, K.C.3
Phung, Q.4
Cheung, T.K.5
Cochran, A.G.6
-
11
-
-
33745753378
-
Structure and E3-ligase activity of the Ring-Ring complex of polycomb proteins Bmi1 and Ring1b
-
Buchwald, G., van der Stoop, P., Weichenrieder, O., Perrakis, A., van Lohuizen, M., and Sixma, T. K. (2006) Structure and E3-ligase activity of the Ring-Ring complex of polycomb proteins Bmi1 and Ring1b. EMBO J. 25, 2465-2474
-
(2006)
EMBO J.
, vol.25
, pp. 2465-2474
-
-
Buchwald, G.1
Van Der Stoop, P.2
Weichenrieder, O.3
Perrakis, A.4
Van Lohuizen, M.5
Sixma, T.K.6
-
12
-
-
7244234099
-
Role of histone H2A ubiquitination in Polycomb silencing
-
Wang, H., Wang, L., Erdjument-Bromage, H., Vidal, M., Tempst, P., Jones, R. S., and Zhang, Y. (2004) Role of histone H2A ubiquitination in Polycomb silencing. Nature 431, 873-878
-
(2004)
Nature
, vol.431
, pp. 873-878
-
-
Wang, H.1
Wang, L.2
Erdjument-Bromage, H.3
Vidal, M.4
Tempst, P.5
Jones, R.S.6
Zhang, Y.7
-
13
-
-
84866388311
-
RNF168 ubiquitinates Lys-13-15 on H2A/H2AX to drive DNA damage signaling
-
Mattiroli, F., Vissers, J. H., van Dijk, W. J., Ikpa, P., Citterio, E., Vermeulen, W., Marteijn, J. A., and Sixma, T. K. (2012) RNF168 ubiquitinates Lys-13-15 on H2A/H2AX to drive DNA damage signaling. Cell 150, 1182-1195
-
(2012)
Cell
, vol.150
, pp. 1182-1195
-
-
Mattiroli, F.1
Vissers, J.H.2
Van Dijk, W.J.3
Ikpa, P.4
Citterio, E.5
Vermeulen, W.6
Marteijn, J.A.7
Sixma, T.K.8
-
14
-
-
84898734084
-
Lysine-targeting specificity in ubiquitin and ubiquitin-like modification pathways
-
Mattiroli, F., and Sixma, T. K. (2014) Lysine-targeting specificity in ubiquitin and ubiquitin-like modification pathways. Nat. Struct. Mol. Biol. 21, 308-316
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 308-316
-
-
Mattiroli, F.1
Sixma, T.K.2
-
15
-
-
84898725334
-
The nucleosome acidic patch plays a critical role in RNF168-dependent ubiquitination of histone H2A
-
Mattiroli, F., Uckelmann, M., Sahtoe, D. D., van Dijk, W. J., and Sixma, T. K. (2014) The nucleosome acidic patch plays a critical role in RNF168-dependent ubiquitination of histone H2A. Nat. Commun. 5, 3291
-
(2014)
Nat. Commun.
, vol.5
, pp. 3291
-
-
Mattiroli, F.1
Uckelmann, M.2
Sahtoe, D.D.3
Van Dijk, W.J.4
Sixma, T.K.5
-
16
-
-
84908408859
-
Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome
-
McGinty, R. K., Henrici, R. C., and Tan, S. (2014) Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome. Nature 514, 591-596
-
(2014)
Nature
, vol.514
, pp. 591-596
-
-
McGinty, R.K.1
Henrici, R.C.2
Tan, S.3
-
18
-
-
84881478295
-
Essentiality of a non-RING element in priming donor ubiquitin for catalysis by a monomeric E3
-
Dou, H., Buetow, L., Sibbet, G. J., Cameron, K., and Huang, D. T. (2013) Essentiality of a non-RING element in priming donor ubiquitin for catalysis by a monomeric E3. Nat. Struct. Mol. Biol. 20, 982-986
-
(2013)
Nat. Struct. Mol. Biol.
, vol.20
, pp. 982-986
-
-
Dou, H.1
Buetow, L.2
Sibbet, G.J.3
Cameron, K.4
Huang, D.T.5
-
19
-
-
84865781586
-
Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis
-
Plechanovová, A., Jaffray, E. G., Tatham, M. H., Naismith, J. H., and Hay, R. T. (2012) Structure of a RING E3 ligase and ubiquitin-loaded E2 primed for catalysis. Nature 489, 115-120
-
(2012)
Nature
, vol.489
, pp. 115-120
-
-
Plechanovová, A.1
Jaffray, E.G.2
Tatham, M.H.3
Naismith, J.H.4
Hay, R.T.5
-
20
-
-
84866858702
-
Structure of an E3:E2∼Ub complex reveals an allosteric mechanism shared among RING/U-box ligases
-
Pruneda, J. N., Littlefield, P. J., Soss, S. E., Nordquist, K. A., Chazin, W. J., Brzovic, P. S., and Klevit, R. E. (2012) Structure of an E3:E2∼Ub complex reveals an allosteric mechanism shared among RING/U-box ligases. Mol. Cell 47, 933-942
-
(2012)
Mol. Cell
, vol.47
, pp. 933-942
-
-
Pruneda, J.N.1
Littlefield, P.J.2
Soss, S.E.3
Nordquist, K.A.4
Chazin, W.J.5
Brzovic, P.S.6
Klevit, R.E.7
-
21
-
-
78751498823
-
E2s: Structurally economical and functionally replete
-
Wenzel, D. M., Stoll, K. E., and Klevit, R. E. (2011) E2s: structurally economical and functionally replete. Biochem. J. 433, 31-42
-
(2011)
Biochem. J.
, vol.433
, pp. 31-42
-
-
Wenzel, D.M.1
Stoll, K.E.2
Klevit, R.E.3
-
22
-
-
79955027304
-
E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6
-
Hibbert, R. G., Huang, A., Boelens, R., and Sixma, T. K. (2011) E3 ligase Rad18 promotes monoubiquitination rather than ubiquitin chain formation by E2 enzyme Rad6. Proc. the Natl. Acad. Sci. U.S.A. 108, 5590-5595
-
(2011)
Proc. The Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 5590-5595
-
-
Hibbert, R.G.1
Huang, A.2
Boelens, R.3
Sixma, T.K.4
-
23
-
-
0033485869
-
The E2-E3 interaction in the N-end rule pathway: The RING-H2 finger of E3 is required for the synthesis of multiubiquitin chain
-
Xie, Y., and Varshavsky, A. (1999) The E2-E3 interaction in the N-end rule pathway: the RING-H2 finger of E3 is required for the synthesis of multiubiquitin chain. EMBO J. 18, 6832-6844
-
(1999)
EMBO J.
, vol.18
, pp. 6832-6844
-
-
Xie, Y.1
Varshavsky, A.2
-
24
-
-
0034600851
-
Two RING finger proteins mediate cooperation between ubiquitin-conjugating enzymes in DNA repair
-
Ulrich, H. D., and Jentsch, S. (2000) Two RING finger proteins mediate cooperation between ubiquitin-conjugating enzymes in DNA repair. EMBO J. 19, 3388-3397
-
(2000)
EMBO J.
, vol.19
, pp. 3388-3397
-
-
Ulrich, H.D.1
Jentsch, S.2
-
25
-
-
0030791425
-
Domains required for dimerization of yeast Rad6 ubiquitin-conjugating enzyme and Rad18 DNA binding protein
-
Bailly, V., Prakash, S., and Prakash, L. (1997) Domains required for dimerization of yeast Rad6 ubiquitin-conjugating enzyme and Rad18 DNA binding protein. Mol. Cell. Biol. 17, 4536-4543
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 4536-4543
-
-
Bailly, V.1
Prakash, S.2
Prakash, L.3
-
26
-
-
34848877881
-
Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification
-
Notenboom, V., Hibbert, R. G., van Rossum-Fikkert, S. E., Olsen, J. V., Mann, M., and Sixma, T. K. (2007) Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification. Nucleic Acids Res. 35, 5819-5830
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 5819-5830
-
-
Notenboom, V.1
Hibbert, R.G.2
Van Rossum-Fikkert, S.E.3
Olsen, J.V.4
Mann, M.5
Sixma, T.K.6
-
27
-
-
68949149115
-
Direct Bre1-Paf1 complex interactions and RING finger-independent Bre1-Rad6 interactions mediate histone H2B ubiquitylation in yeast
-
Kim, J., and Roeder, R. G. (2009) Direct Bre1-Paf1 complex interactions and RING finger-independent Bre1-Rad6 interactions mediate histone H2B ubiquitylation in yeast. J. Biol. Chem. 284, 20582-20592
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 20582-20592
-
-
Kim, J.1
Roeder, R.G.2
-
28
-
-
14844303376
-
The pST44 polycistronic expression system for producing protein complexes in Escherichia coli
-
Tan, S., Kern, R. C., and Selleck, W. (2005) The pST44 polycistronic expression system for producing protein complexes in Escherichia coli. Protein Expr. Purif. 40, 385-395
-
(2005)
Protein Expr. Purif.
, vol.40
, pp. 385-395
-
-
Tan, S.1
Kern, R.C.2
Selleck, W.3
-
29
-
-
0031587289
-
Characterization of nucleosome core particles containing histone proteins made in bacteria
-
Luger, K., Rechsteiner, T. J., Flaus, A. J., Waye, M. M., and Richmond, T. J. (1997) Characterization of nucleosome core particles containing histone proteins made in bacteria. J. Mol. Biol. 272, 301-311
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 301-311
-
-
Luger, K.1
Rechsteiner, T.J.2
Flaus, A.J.3
Waye, M.M.4
Richmond, T.J.5
-
30
-
-
0032512794
-
New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
-
Lowary, P. T., and Widom, J. (1998) New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. J. Mol. Biol. 276, 19-42
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 19-42
-
-
Lowary, P.T.1
Widom, J.2
-
31
-
-
49449118512
-
A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation
-
Nakanishi, S., Sanderson, B. W., Delventhal, K. M., Bradford, W. D., Staehling-Hampton, K., and Shilatifard, A. (2008) A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation. Nat. Struct. Mol. Biol. 15, 881-888
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 881-888
-
-
Nakanishi, S.1
Sanderson, B.W.2
Delventhal, K.M.3
Bradford, W.D.4
Staehling-Hampton, K.5
Shilatifard, A.6
-
32
-
-
77952519938
-
Structural basis for assembly and activation of the heterotetramericSAGA histone H2B deubiquitinase module
-
Köhler, A., Zimmerman, E., Schneider, M., Hurt, E., and Zheng, N. (2010) Structural basis for assembly and activation of the heterotetramericSAGA histone H2B deubiquitinase module. Cell 141, 606-617
-
(2010)
Cell
, vol.141
, pp. 606-617
-
-
Köhler, A.1
Zimmerman, E.2
Schneider, M.3
Hurt, E.4
Zheng, N.5
-
33
-
-
0023236126
-
The yeast DNA repair gene RAD6 encodes a ubiquitin-conjugating enzyme
-
Jentsch, S., McGrath, J. P., and Varshavsky, A. (1987) The yeast DNA repair gene RAD6 encodes a ubiquitin-conjugating enzyme. Nature 329, 131-134
-
(1987)
Nature
, vol.329
, pp. 131-134
-
-
Jentsch, S.1
McGrath, J.P.2
Varshavsky, A.3
-
34
-
-
28944435024
-
Mechanism of lysine 48-linked ubiquitin-chain synthesis by the cullin-RING ubiquitin-ligase complex SCF-Cdc34
-
Petroski, M. D., and Deshaies, R. J. (2005) Mechanism of lysine 48-linked ubiquitin-chain synthesis by the cullin-RING ubiquitin-ligase complex SCF-Cdc34. Cell 123, 1107-1120
-
(2005)
Cell
, vol.123
, pp. 1107-1120
-
-
Petroski, M.D.1
Deshaies, R.J.2
-
35
-
-
79952407243
-
Ubiquitin in motion: Structural studies of the ubiquitin-conjugating enzyme approximately ubiquitin conjugate
-
Pruneda, J. N., Stoll, K. E., Bolton, L. J., Brzovic, P. S., and Klevit, R. E. (2011) Ubiquitin in motion: structural studies of the ubiquitin-conjugating enzyme approximately ubiquitin conjugate. Biochemistry 50, 1624-1633
-
(2011)
Biochemistry
, vol.50
, pp. 1624-1633
-
-
Pruneda, J.N.1
Stoll, K.E.2
Bolton, L.J.3
Brzovic, P.S.4
Klevit, R.E.5
-
36
-
-
31044437051
-
The activity of a human endoplasmic reticulum-associated degradation E3, gp78, requires its Cue domain, RING finger, and an E2-binding site
-
Chen, B., Mariano, J., Tsai, Y. C., Chan, A. H., Cohen, M., and Weissman, A. M. (2006) The activity of a human endoplasmic reticulum-associated degradation E3, gp78, requires its Cue domain, RING finger, and an E2-binding site. Proc. Natl. Acad. Sci. U.S.A. 103, 341-346
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 341-346
-
-
Chen, B.1
Mariano, J.2
Tsai, Y.C.3
Chan, A.H.4
Cohen, M.5
Weissman, A.M.6
-
37
-
-
67449110736
-
Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78
-
Das, R., Mariano, J., Tsai, Y. C., Kalathur, R. C., Kostova, Z., Li, J., Tarasov, S. G., McFeeters, R. L., Altieri, A. S., Ji, X., Byrd, R. A., and Weissman, A. M. (2009) Allosteric activation of E2-RING finger-mediated ubiquitylation by a structurally defined specific E2-binding region of gp78. Mol. Cell 34, 674-685
-
(2009)
Mol. Cell
, vol.34
, pp. 674-685
-
-
Das, R.1
Mariano, J.2
Tsai, Y.C.3
Kalathur, R.C.4
Kostova, Z.5
Li, J.6
Tarasov, S.G.7
McFeeters, R.L.8
Altieri, A.S.9
Ji, X.10
Byrd, R.A.11
Weissman, A.M.12
-
38
-
-
84875056702
-
The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states
-
Tomson, B. N., and Arndt, K. M. (2013) The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states. Biochim. Biophys. Acta 1829, 116-126
-
(2013)
Biochim. Biophys. Acta
, vol.1829
, pp. 116-126
-
-
Tomson, B.N.1
Arndt, K.M.2
|