Computational methods toward accurate RNA structure prediction using coarse-grained and all-atom models

Methods in Enzymology

Volumn 553, Issue , 2015, Pages 65-89

  Krokhotin, Andrey ^a   Dokholyan, Nikolay V ^a  

^a UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

Author keywords

All atom model; Coarse grained model; DMD; Prediction; RNA; Structure

Indexed keywords

HYDROXYL RADICAL; PHOSPHATE; RNA;

ACCURACY; BASE PAIRING; COMPUTER SIMULATION; CRYSTAL STRUCTURE; DISCRETE MOLECULAR DYNAMICS; ENTROPY; HYDROGEN BOND; HYDROPHOBICITY; MACROMOLECULE; MATHEMATICAL ANALYSIS; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; REVIEW; RIBOSWITCH; RNA FOLDING; RNA PROBE; RNA SEQUENCE; RNA STRUCTURE; THERMODYNAMICS; THREE DIMENSIONAL IMAGING; CHEMICAL PHENOMENA; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; CONFORMATION;

BASE PAIRING; ENTROPY; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; MODELS, MOLECULAR; MOLECULAR DYNAMICS SIMULATION; NUCLEIC ACID CONFORMATION; PHOSPHATES; RNA; RNA FOLDING; SOFTWARE;

EID: 84923586605     PISSN: 00766879     EISSN: 15577988     Source Type: Book Series    
DOI: 10.1016/bs.mie.2014.10.052     Document Type: Chapter

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