IFoldRNA: Three-dimensional RNA structure prediction and folding

Bioinformatics

Volumn 24, Issue 17, 2008, Pages 1951-1952

  Sharma, Shantanu ^a   Ding, Feng ^a   Dokholyan, Nikolay V ^a  

^a UNIVERSITY OF NORTH CAROLINA SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA;

ANALYTIC METHOD; ARTICLE; COMPUTER PREDICTION; COMPUTER PROGRAM; COMPUTER SIMULATION; INFORMATION RETRIEVAL; MOLECULAR DYNAMICS; NUCLEIC ACID STRUCTURE; PRIORITY JOURNAL; RNA ANALYSIS; RNA CONFORMATION; RNA FOLDING; RNA STRUCTURE; THERMODYNAMICS; THREE DIMENSIONAL IMAGING;

EID: 50549096615     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn328     Document Type: Article

References (8)

1. Das,R. and Baker,D. (2007) Automated de novo prediction of native-like RNA tertiary structures. Proc. Natl Acad. Sci. USA, 104, 14664-9.
2. Ding,F. and Dokholyan,N.V. (2006) Emergence of protein fold families through rational design. PLoS. Comput. Biol., 2, e85.
3. Ding,F. et al. (2008) Ab initio RNA folding by discrete molecular dynamics: From structure prediction to folding mechanisms. RNA, 14, 1164-73
4. Dokholyan,N.V. et al. (1998) Discrete molecular dynamics studies of the folding of a protein-like model. Fold. Des., 3, 577-587.
5. Parisien,M. and Major,F. (2008) The MC-fold and MC-sym pipeline infers RNA structure from sequence data. Nature, 452, 51-55.
6. Shapiro,B.A. et al. (2007) Bridging the gap in RNA structure prediction. Curr. Opin. Struct. Biol., 17, 157-165.
7. Sharma,S. et al. (2006) iFold: A platform for interactive folding simulations of proteins. Bioinformatics, 22, 2693-2694.
8. Wilkinson,K.A. et al. (2005) RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts. J. Am. Chem. Soc., 127, 4659-4667.