-
1
-
-
33845895536
-
The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
-
Kramer, E. B., and Farabaugh, P. J. (2007) The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA 13, 87-96
-
(2007)
RNA
, vol.13
, pp. 87-96
-
-
Kramer, E.B.1
Farabaugh, P.J.2
-
2
-
-
0142186288
-
Transcription elongation factor S-II maintains transcriptional fidelity and confers oxidative stress resistance
-
Koyama, H., Ito, T., Nakanishi, T., Kawamura, N., and Sekimizu, K. (2003) Transcription elongation factor S-II maintains transcriptional fidelity and confers oxidative stress resistance. Genes Cells 8, 779-788
-
(2003)
Genes Cells
, vol.8
, pp. 779-788
-
-
Koyama, H.1
Ito, T.2
Nakanishi, T.3
Kawamura, N.4
Sekimizu, K.5
-
3
-
-
33644746221
-
RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo
-
Nesser, N. K., Peterson, D. O., and Hawley, D. K. (2006) RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo. Proc. Natl. Acad. Sci. U.S.A. 103, 3268-3273
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 3268-3273
-
-
Nesser, N.K.1
Peterson, D.O.2
Hawley, D.K.3
-
4
-
-
0037025387
-
Use of an in vivo reporter assay to test for transcriptional and translational fidelity in yeast
-
Shaw, R. J., Bonawitz, N. D., and Reines, D. (2002) Use of an in vivo reporter assay to test for transcriptional and translational fidelity in yeast. J. Biol. Chem. 277, 24420-24426
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 24420-24426
-
-
Shaw, R.J.1
Bonawitz, N.D.2
Reines, D.3
-
5
-
-
33646188087
-
Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil
-
Malagon, F., Kireeva, M. L., Shafer, B. K., Lubkowska, L., Kashlev, M., and Strathern, J. N. (2006) Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil. Genetics 172, 2201-2209
-
(2006)
Genetics
, vol.172
, pp. 2201-2209
-
-
Malagon, F.1
Kireeva, M.L.2
Shafer, B.K.3
Lubkowska, L.4
Kashlev, M.5
Strathern, J.N.6
-
6
-
-
44449094019
-
Transient reversal ofRNApolymerase II active site closing controls fidelity of transcription elongation
-
Kireeva, M. L., Nedialkov, Y. A., Cremona, G. H., Purtov, Y. A., Lubkowska, L., Malagon, F., Burton, Z. F., Strathern, J. N., and Kashlev, M. (2008) Transient reversal ofRNApolymerase II active site closing controls fidelity of transcription elongation. Mol. Cell 30, 557-566
-
(2008)
Mol. Cell
, vol.30
, pp. 557-566
-
-
Kireeva, M.L.1
Nedialkov, Y.A.2
Cremona, G.H.3
Purtov, Y.A.4
Lubkowska, L.5
Malagon, F.6
Burton, Z.F.7
Strathern, J.N.8
Kashlev, M.9
-
7
-
-
44449103640
-
The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by α-amanitin
-
Kaplan, C. D., Larsson, K. M., and Kornberg, R. D. (2008) The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by α-amanitin. Mol. Cell 30, 547-556
-
(2008)
Mol. Cell
, vol.30
, pp. 547-556
-
-
Kaplan, C.D.1
Larsson, K.M.2
Kornberg, R.D.3
-
8
-
-
0032524661
-
Transcriptional fidelity and proofreading by RNA polymerase II
-
Thomas, M. J., Platas, A. A., and Hawley, D. K. (1998) Transcriptional fidelity and proofreading by RNA polymerase II. Cell 93, 627-637
-
(1998)
Cell
, vol.93
, pp. 627-637
-
-
Thomas, M.J.1
Platas, A.A.2
Hawley, D.K.3
-
9
-
-
79954592392
-
-
(Atkins, J F., and Gesteland, R. F., eds) Springer, New York
-
Anikin, M., Molodtsov, D., Temiakov, D., and McAllister. (2010) Transcript slippage and recoding, in Recoding: Expansion of Decoding Rules Enriches Gene Expression (Atkins, J. F., and Gesteland, R. F., eds) pp. 409-434, Springer, New York
-
(2010)
Transcript Slippage and Recoding, in Recoding: Expansion of Decoding Rules Enriches Gene Expression
, pp. 409-434
-
-
Anikin, M.1
Molodtsov, D.2
Temiakov, D.3
McAllister4
-
10
-
-
0027326224
-
Termination and slippage by bacteriophage T7 RNA polymerase
-
Macdonald, L. E., Zhou, Y., and McAllister, W. T. (1993) Termination and slippage by bacteriophage T7 RNA polymerase. J. Mol. Biol. 232, 1030-1047
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 1030-1047
-
-
MacDonald, L.E.1
Zhou, Y.2
McAllister, W.T.3
-
11
-
-
23744491110
-
Transcriptional slippage in bacteria: Distribution in sequenced genomes and utilization in IS element gene expression
-
Baranov, P. V., Hammer, A. W., Zhou, J., Gesteland, R. F., and Atkins, J. F. (2005) Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression. Genome Biol. 6, R25
-
(2005)
Genome Biol
, vol.6
-
-
Baranov, P.V.1
Hammer, A.W.2
Zhou, J.3
Gesteland, R.F.4
Atkins, J.F.5
-
12
-
-
0034652208
-
Nonlinearity in genetic decoding. Homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting
-
Larsen, B., Wills, N. M., Nelson, C., Atkins, J. F., and Gesteland, R. F. (2000) Nonlinearity in genetic decoding. Homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting. Proc. Natl. Acad. Sci. U.S.A. 97, 1683-1688
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 1683-1688
-
-
Larsen, B.1
Wills, N.M.2
Nelson, C.3
Atkins, J.F.4
Gesteland, R.F.5
-
13
-
-
33750686268
-
Transcriptional slippage controls production of type III secretion apparatus components in Shigella flexneri
-
Penno, C., Hachani, A., Biskri, L., Sansonetti, P., Allaoui, A., and Parsot, C. (2006) Transcriptional slippage controls production of type III secretion apparatus components in Shigella flexneri. Mol. Microbiol. 62, 1460-1468
-
(2006)
Mol. Microbiol.
, vol.62
, pp. 1460-1468
-
-
Penno, C.1
Hachani, A.2
Biskri, L.3
Sansonetti, P.4
Allaoui, A.5
Parsot, C.6
-
14
-
-
0027169847
-
Transcriptional slippage during the transcription initiation process at a mutant lac promoter in vivo
-
Xiong, X. F., and Reznikoff, W. S. (1993) Transcriptional slippage during the transcription initiation process at a mutant lac promoter in vivo. J. Mol. Biol. 231, 569-580
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 569-580
-
-
Xiong, X.F.1
Reznikoff, W.S.2
-
15
-
-
48849117141
-
Transcriptional slippage prompts recoding in alternate reading frames in the hepatitis C virus (HCV) core sequence from strain HCV-1
-
Ratinier, M., Boulant, S., Combet, C., Targett-Adams, P., McLauchlan, J., and Lavergne, J. P. (2008) Transcriptional slippage prompts recoding in alternate reading frames in the hepatitis C virus (HCV) core sequence from strain HCV-1. J. Gen. Virol. 89, 1569-1578
-
(2008)
J. Gen. Virol.
, vol.89
, pp. 1569-1578
-
-
Ratinier, M.1
Boulant, S.2
Combet, C.3
Targett-Adams, P.4
McLauchlan, J.5
Lavergne, J.P.6
-
16
-
-
0026441153
-
Reading-frame restoration with an apolipoprotein B gene frameshift mutation
-
Linton, M. F., Pierotti, V., and Young, S. G. (1992) Reading-frame restoration with an apolipoprotein B gene frameshift mutation. Proc. Natl. Acad. Sci. U.S.A. 89, 11431-11435
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 11431-11435
-
-
Linton, M.F.1
Pierotti, V.2
Young, S.G.3
-
17
-
-
0031009123
-
Readingframe restoration by transcriptional slippage at long stretches of adenine residues in mammalian cells
-
Linton, M. F., Raabe, M., Pierotti, V., and Young, S. G. (1997) Readingframe restoration by transcriptional slippage at long stretches of adenine residues in mammalian cells. J. Biol. Chem. 272, 14127-14132
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 14127-14132
-
-
Linton, M.F.1
Raabe, M.2
Pierotti, V.3
Young, S.G.4
-
18
-
-
0025329221
-
Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli
-
Wagner, L. A., Weiss, R. B., Driscoll, R., Dunn, D. S., and Gesteland, R. F. (1990) Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli. Nucleic Acids Res. 18, 3529-3535
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3529-3535
-
-
Wagner, L.A.1
Weiss, R.B.2
Driscoll, R.3
Dunn, D.S.4
Gesteland, R.F.5
-
19
-
-
84873819348
-
-
Zhou, Y. N., Lubkowska, L., Hui, M., Court, C., Chen, S., Court, D. L., Strathern, J. N., Jin, D. J., and Kashlev, M. (2013) J. Biol. Chem. 288, 2700-2710
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 2700-2710
-
-
Zhou, Y.N.1
Lubkowska, L.2
Hui, M.3
Court, C.4
Chen, S.5
Court, D.L.6
Strathern, J.N.7
Jin, D.J.8
Kashlev, M.9
-
20
-
-
27144464816
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Amberg, D. C., Burke, D., and Strathern, J. N. (eds). (2005) Methods in Yeast Genetics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
(2005)
Methods in Yeast Genetics
-
-
Amberg, D.C.1
Burke, D.2
Strathern, J.N.3
-
21
-
-
33847654324
-
Recombineering. In vivo genetic engineering in E. coli, S. enterica, and beyond
-
Sawitzke, J. A., Thomason, L. C., Costantino, N., Bubunenko, M., Datta, S., and Court, D. L. (2007) Recombineering. In vivo genetic engineering in E. coli, S. enterica, and beyond. Methods Enzymol. 421, 171-199
-
(2007)
Methods Enzymol.
, vol.421
, pp. 171-199
-
-
Sawitzke, J.A.1
Thomason, L.C.2
Costantino, N.3
Bubunenko, M.4
Datta, S.5
Court, D.L.6
-
22
-
-
3142536716
-
Exploration of essential gene functions via titratable promoter alleles
-
Mnaimneh, S., Davierwala, A. P., Haynes, J., Moffat, J., Peng, W. T., Zhang, W., Yang, X., Pootoolal, J., Chua, G., Lopez, A., Trochesset, M., Morse, D., Krogan, N. J., Hiley, S. L., Li, Z., Morris, Q., Grigull, J., Mitsakakis, N., Roberts, C. J., Greenblatt, J. F., Boone, C., Kaiser, C. A., Andrews, B. J., and Hughes, T. R. (2004) Exploration of essential gene functions via titratable promoter alleles. Cell 118, 31-44
-
(2004)
Cell
, vol.118
, pp. 31-44
-
-
Mnaimneh, S.1
Davierwala, A.P.2
Haynes, J.3
Moffat, J.4
Peng, W.T.5
Zhang, W.6
Yang, X.7
Pootoolal, J.8
Chua, G.9
Lopez, A.10
Trochesset, M.11
Morse, D.12
Krogan, N.J.13
Hiley, S.L.14
Li, Z.15
Morris, Q.16
Grigull, J.17
Mitsakakis, N.18
Roberts, C.J.19
Greenblatt, J.F.20
Boone, C.21
Kaiser, C.A.22
Andrews, B.J.23
Hughes, T.R.24
more..
-
23
-
-
0345907929
-
Engineering of elongation complexes of bacterial and yeast RNA polymerases
-
Komissarova, N., Kireeva, M. L., Becker, J., Sidorenkov, I., and Kashlev, M. (2003) Engineering of elongation complexes of bacterial and yeast RNA polymerases. Methods Enzymol. 371, 233-251
-
(2003)
Methods Enzymol.
, vol.371
, pp. 233-251
-
-
Komissarova, N.1
Kireeva, M.L.2
Becker, J.3
Sidorenkov, I.4
Kashlev, M.5
-
24
-
-
15944393126
-
Nature of the nucleosomal barrier to RNA polymerase II
-
Kireeva, M. L., Hancock, B., Cremona, G. H., Walter, W., Studitsky, V. M., and Kashlev, M. (2005) Nature of the nucleosomal barrier to RNA polymerase II. Mol. Cell 18, 97-108
-
(2005)
Mol. Cell
, vol.18
, pp. 97-108
-
-
Kireeva, M.L.1
Hancock, B.2
Cremona, G.H.3
Walter, W.4
Studitsky, V.M.5
Kashlev, M.6
-
25
-
-
67049100283
-
Mechanism of sequence-specific pausing of bacterial RNA polymerase
-
Kireeva, M. L., and Kashlev, M. (2009) Mechanism of sequence-specific pausing of bacterial RNA polymerase. Proc. Natl. Acad. Sci. U.S.A. 106, 8900-8905
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 8900-8905
-
-
Kireeva, M.L.1
Kashlev, M.2
-
26
-
-
0037610786
-
The initiation-elongation transition. Lateral mobility of RNA in RNA polymerase II complexes is greatly reduced at +8/+9 and absent by +23
-
Pal, M., and Luse, D. S. (2003) The initiation-elongation transition. Lateral mobility of RNA in RNA polymerase II complexes is greatly reduced at +8/+9 and absent by +23. Proc. Natl. Acad. Sci. U.S.A. 100, 5700-5705
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 5700-5705
-
-
Pal, M.1
Luse, D.S.2
-
27
-
-
45149097248
-
Regulation of bacterial gene expression by the NTP substrates of transcription initiation
-
Turnbough, C. L., Jr. (2008) Regulation of bacterial gene expression by the NTP substrates of transcription initiation. Mol. Microbiol. 69, 10-14
-
(2008)
Mol. Microbiol.
, vol.69
, pp. 10-14
-
-
Turnbough Jr., C.L.1
-
28
-
-
0037208811
-
Maltose-binding protein as a solubility enhancer
-
Fox, J. D., and Waugh, D. S. (2003) Maltose-binding protein as a solubility enhancer. Methods Mol. Biol. 205, 99-117
-
(2003)
Methods Mol. Biol.
, vol.205
, pp. 99-117
-
-
Fox, J.D.1
Waugh, D.S.2
-
29
-
-
0029858912
-
In vitro characterization of mutant yeast RNA polymerase II with reduced binding for elongation factor TFIIS
-
Wu, J., Awrey, D. E., Edwards, A. M., Archambault, J., and Friesen, J. D. (1996) In vitro characterization of mutant yeast RNA polymerase II with reduced binding for elongation factor TFIIS. Proc. Natl. Acad. Sci. U.S.A. 93, 11552-11557
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 11552-11557
-
-
Wu, J.1
Awrey, D.E.2
Edwards, A.M.3
Archambault, J.4
Friesen, J.D.5
-
30
-
-
0021668558
-
A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast. 5-Fluoro-orotic acid resistance
-
Boeke, J. D., LaCroute, F., and Fink, G. R. (1984) A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast. 5-Fluoro-orotic acid resistance. Mol. Gen. Genet. 197, 345-346
-
(1984)
Mol. Gen. Genet.
, vol.197
, pp. 345-346
-
-
Boeke, J.D.1
Lacroute, F.2
Fink, G.R.3
-
31
-
-
0034705144
-
An efficient recombination system for chromosome engineering in Escherichia coli
-
Yu, D., Ellis, H. M., Lee, E. C., Jenkins, N. A., Copeland, N. G., and Court, D. L. (2000) An efficient recombination system for chromosome engineering in Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 97, 5978-5983
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 5978-5983
-
-
Yu, D.1
Ellis, H.M.2
Lee, E.C.3
Jenkins, N.A.4
Copeland, N.G.5
Court, D.L.6
-
32
-
-
0346515712
-
Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae
-
Kireeva, M. L., Lubkowska, L., Komissarova, N., and Kashlev, M. (2003) Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae. Methods in enzymology 370, 138-155
-
(2003)
Methods in Enzymology
, vol.370
, pp. 138-155
-
-
Kireeva, M.L.1
Lubkowska, L.2
Komissarova, N.3
Kashlev, M.4
-
33
-
-
84861900573
-
Isolation and characterization of transcription fidelity mutants
-
Strathern, J. N., Jin, D. J., Court, D. L., and Kashlev, M. (2012) Isolation and characterization of transcription fidelity mutants. Biochim. Biophys. Acta 1819, 694-699
-
(2012)
Biochim. Biophys. Acta
, vol.1819
, pp. 694-699
-
-
Strathern, J.N.1
Jin, D.J.2
Court, D.L.3
Kashlev, M.4
-
34
-
-
0035868713
-
Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA: DNA
-
Sarafianos, S. G., Das, K., Tantillo, C., Clark, A. D., Jr., Ding, J., Whitcomb, J. M., Boyer, P. L., Hughes, S. H., and Arnold, E. (2001) Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA: DNA. EMBO J. 20, 1449-1461
-
(2001)
EMBO J.
, vol.20
, pp. 1449-1461
-
-
Sarafianos, S.G.1
Das, K.2
Tantillo, C.3
Clark Jr., A.D.4
Ding, J.5
Whitcomb, J.M.6
Boyer, P.L.7
Hughes, S.H.8
Arnold, E.9
-
35
-
-
79954601990
-
Regulation of gene expression by reiterative transcription
-
Turnbough, C. L., Jr. (2011) Regulation of gene expression by reiterative transcription. Curr. Opin. Microbiol. 14, 142-147
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 142-147
-
-
Turnbough Jr., C.L.1
-
36
-
-
73649143880
-
Transcription elongation complex stability. The topological lock
-
Liu, X., and Martin, C. T. (2009) Transcription elongation complex stability. The topological lock. J. Biol. Chem. 284, 36262-36270
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 36262-36270
-
-
Liu, X.1
Martin, C.T.2
|