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Volumn 288, Issue 4, 2013, Pages 2689-2699

The fidelity of transcription RPB1 (RPO21) mutations that increase transcriptional slippage in S. cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMICAL CHARACTERIZATION; ELEVATED LEVEL; POLYMERASE II; REGULATORY MECHANISM; REPORTER GENE; RNA POLYMERASE II; RNA SYNTHESIS; S.CEREVISIAE; SLIPPAGE RATES;

EID: 84873882874     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M112.429506     Document Type: Article
Times cited : (32)

References (36)
  • 1
    • 33845895536 scopus 로고    scopus 로고
    • The frequency of translational misreading errors in E. coli is largely determined by tRNA competition
    • Kramer, E. B., and Farabaugh, P. J. (2007) The frequency of translational misreading errors in E. coli is largely determined by tRNA competition. RNA 13, 87-96
    • (2007) RNA , vol.13 , pp. 87-96
    • Kramer, E.B.1    Farabaugh, P.J.2
  • 2
    • 0142186288 scopus 로고    scopus 로고
    • Transcription elongation factor S-II maintains transcriptional fidelity and confers oxidative stress resistance
    • Koyama, H., Ito, T., Nakanishi, T., Kawamura, N., and Sekimizu, K. (2003) Transcription elongation factor S-II maintains transcriptional fidelity and confers oxidative stress resistance. Genes Cells 8, 779-788
    • (2003) Genes Cells , vol.8 , pp. 779-788
    • Koyama, H.1    Ito, T.2    Nakanishi, T.3    Kawamura, N.4    Sekimizu, K.5
  • 3
    • 33644746221 scopus 로고    scopus 로고
    • RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo
    • Nesser, N. K., Peterson, D. O., and Hawley, D. K. (2006) RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo. Proc. Natl. Acad. Sci. U.S.A. 103, 3268-3273
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 3268-3273
    • Nesser, N.K.1    Peterson, D.O.2    Hawley, D.K.3
  • 4
    • 0037025387 scopus 로고    scopus 로고
    • Use of an in vivo reporter assay to test for transcriptional and translational fidelity in yeast
    • Shaw, R. J., Bonawitz, N. D., and Reines, D. (2002) Use of an in vivo reporter assay to test for transcriptional and translational fidelity in yeast. J. Biol. Chem. 277, 24420-24426
    • (2002) J. Biol. Chem. , vol.277 , pp. 24420-24426
    • Shaw, R.J.1    Bonawitz, N.D.2    Reines, D.3
  • 5
    • 33646188087 scopus 로고    scopus 로고
    • Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil
    • Malagon, F., Kireeva, M. L., Shafer, B. K., Lubkowska, L., Kashlev, M., and Strathern, J. N. (2006) Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil. Genetics 172, 2201-2209
    • (2006) Genetics , vol.172 , pp. 2201-2209
    • Malagon, F.1    Kireeva, M.L.2    Shafer, B.K.3    Lubkowska, L.4    Kashlev, M.5    Strathern, J.N.6
  • 7
    • 44449103640 scopus 로고    scopus 로고
    • The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by α-amanitin
    • Kaplan, C. D., Larsson, K. M., and Kornberg, R. D. (2008) The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by α-amanitin. Mol. Cell 30, 547-556
    • (2008) Mol. Cell , vol.30 , pp. 547-556
    • Kaplan, C.D.1    Larsson, K.M.2    Kornberg, R.D.3
  • 8
    • 0032524661 scopus 로고    scopus 로고
    • Transcriptional fidelity and proofreading by RNA polymerase II
    • Thomas, M. J., Platas, A. A., and Hawley, D. K. (1998) Transcriptional fidelity and proofreading by RNA polymerase II. Cell 93, 627-637
    • (1998) Cell , vol.93 , pp. 627-637
    • Thomas, M.J.1    Platas, A.A.2    Hawley, D.K.3
  • 10
    • 0027326224 scopus 로고
    • Termination and slippage by bacteriophage T7 RNA polymerase
    • Macdonald, L. E., Zhou, Y., and McAllister, W. T. (1993) Termination and slippage by bacteriophage T7 RNA polymerase. J. Mol. Biol. 232, 1030-1047
    • (1993) J. Mol. Biol. , vol.232 , pp. 1030-1047
    • MacDonald, L.E.1    Zhou, Y.2    McAllister, W.T.3
  • 11
    • 23744491110 scopus 로고    scopus 로고
    • Transcriptional slippage in bacteria: Distribution in sequenced genomes and utilization in IS element gene expression
    • Baranov, P. V., Hammer, A. W., Zhou, J., Gesteland, R. F., and Atkins, J. F. (2005) Transcriptional slippage in bacteria: distribution in sequenced genomes and utilization in IS element gene expression. Genome Biol. 6, R25
    • (2005) Genome Biol , vol.6
    • Baranov, P.V.1    Hammer, A.W.2    Zhou, J.3    Gesteland, R.F.4    Atkins, J.F.5
  • 12
    • 0034652208 scopus 로고    scopus 로고
    • Nonlinearity in genetic decoding. Homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting
    • Larsen, B., Wills, N. M., Nelson, C., Atkins, J. F., and Gesteland, R. F. (2000) Nonlinearity in genetic decoding. Homologous DNA replicase genes use alternatives of transcriptional slippage or translational frameshifting. Proc. Natl. Acad. Sci. U.S.A. 97, 1683-1688
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 1683-1688
    • Larsen, B.1    Wills, N.M.2    Nelson, C.3    Atkins, J.F.4    Gesteland, R.F.5
  • 13
    • 33750686268 scopus 로고    scopus 로고
    • Transcriptional slippage controls production of type III secretion apparatus components in Shigella flexneri
    • Penno, C., Hachani, A., Biskri, L., Sansonetti, P., Allaoui, A., and Parsot, C. (2006) Transcriptional slippage controls production of type III secretion apparatus components in Shigella flexneri. Mol. Microbiol. 62, 1460-1468
    • (2006) Mol. Microbiol. , vol.62 , pp. 1460-1468
    • Penno, C.1    Hachani, A.2    Biskri, L.3    Sansonetti, P.4    Allaoui, A.5    Parsot, C.6
  • 14
    • 0027169847 scopus 로고
    • Transcriptional slippage during the transcription initiation process at a mutant lac promoter in vivo
    • Xiong, X. F., and Reznikoff, W. S. (1993) Transcriptional slippage during the transcription initiation process at a mutant lac promoter in vivo. J. Mol. Biol. 231, 569-580
    • (1993) J. Mol. Biol. , vol.231 , pp. 569-580
    • Xiong, X.F.1    Reznikoff, W.S.2
  • 15
    • 48849117141 scopus 로고    scopus 로고
    • Transcriptional slippage prompts recoding in alternate reading frames in the hepatitis C virus (HCV) core sequence from strain HCV-1
    • Ratinier, M., Boulant, S., Combet, C., Targett-Adams, P., McLauchlan, J., and Lavergne, J. P. (2008) Transcriptional slippage prompts recoding in alternate reading frames in the hepatitis C virus (HCV) core sequence from strain HCV-1. J. Gen. Virol. 89, 1569-1578
    • (2008) J. Gen. Virol. , vol.89 , pp. 1569-1578
    • Ratinier, M.1    Boulant, S.2    Combet, C.3    Targett-Adams, P.4    McLauchlan, J.5    Lavergne, J.P.6
  • 16
    • 0026441153 scopus 로고
    • Reading-frame restoration with an apolipoprotein B gene frameshift mutation
    • Linton, M. F., Pierotti, V., and Young, S. G. (1992) Reading-frame restoration with an apolipoprotein B gene frameshift mutation. Proc. Natl. Acad. Sci. U.S.A. 89, 11431-11435
    • (1992) Proc. Natl. Acad. Sci. U.S.A. , vol.89 , pp. 11431-11435
    • Linton, M.F.1    Pierotti, V.2    Young, S.G.3
  • 17
    • 0031009123 scopus 로고    scopus 로고
    • Readingframe restoration by transcriptional slippage at long stretches of adenine residues in mammalian cells
    • Linton, M. F., Raabe, M., Pierotti, V., and Young, S. G. (1997) Readingframe restoration by transcriptional slippage at long stretches of adenine residues in mammalian cells. J. Biol. Chem. 272, 14127-14132
    • (1997) J. Biol. Chem. , vol.272 , pp. 14127-14132
    • Linton, M.F.1    Raabe, M.2    Pierotti, V.3    Young, S.G.4
  • 18
    • 0025329221 scopus 로고
    • Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli
    • Wagner, L. A., Weiss, R. B., Driscoll, R., Dunn, D. S., and Gesteland, R. F. (1990) Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli. Nucleic Acids Res. 18, 3529-3535
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3529-3535
    • Wagner, L.A.1    Weiss, R.B.2    Driscoll, R.3    Dunn, D.S.4    Gesteland, R.F.5
  • 25
    • 67049100283 scopus 로고    scopus 로고
    • Mechanism of sequence-specific pausing of bacterial RNA polymerase
    • Kireeva, M. L., and Kashlev, M. (2009) Mechanism of sequence-specific pausing of bacterial RNA polymerase. Proc. Natl. Acad. Sci. U.S.A. 106, 8900-8905
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 8900-8905
    • Kireeva, M.L.1    Kashlev, M.2
  • 26
    • 0037610786 scopus 로고    scopus 로고
    • The initiation-elongation transition. Lateral mobility of RNA in RNA polymerase II complexes is greatly reduced at +8/+9 and absent by +23
    • Pal, M., and Luse, D. S. (2003) The initiation-elongation transition. Lateral mobility of RNA in RNA polymerase II complexes is greatly reduced at +8/+9 and absent by +23. Proc. Natl. Acad. Sci. U.S.A. 100, 5700-5705
    • (2003) Proc. Natl. Acad. Sci. U.S.A. , vol.100 , pp. 5700-5705
    • Pal, M.1    Luse, D.S.2
  • 27
    • 45149097248 scopus 로고    scopus 로고
    • Regulation of bacterial gene expression by the NTP substrates of transcription initiation
    • Turnbough, C. L., Jr. (2008) Regulation of bacterial gene expression by the NTP substrates of transcription initiation. Mol. Microbiol. 69, 10-14
    • (2008) Mol. Microbiol. , vol.69 , pp. 10-14
    • Turnbough Jr., C.L.1
  • 28
    • 0037208811 scopus 로고    scopus 로고
    • Maltose-binding protein as a solubility enhancer
    • Fox, J. D., and Waugh, D. S. (2003) Maltose-binding protein as a solubility enhancer. Methods Mol. Biol. 205, 99-117
    • (2003) Methods Mol. Biol. , vol.205 , pp. 99-117
    • Fox, J.D.1    Waugh, D.S.2
  • 29
    • 0029858912 scopus 로고    scopus 로고
    • In vitro characterization of mutant yeast RNA polymerase II with reduced binding for elongation factor TFIIS
    • Wu, J., Awrey, D. E., Edwards, A. M., Archambault, J., and Friesen, J. D. (1996) In vitro characterization of mutant yeast RNA polymerase II with reduced binding for elongation factor TFIIS. Proc. Natl. Acad. Sci. U.S.A. 93, 11552-11557
    • (1996) Proc. Natl. Acad. Sci. U.S.A. , vol.93 , pp. 11552-11557
    • Wu, J.1    Awrey, D.E.2    Edwards, A.M.3    Archambault, J.4    Friesen, J.D.5
  • 30
    • 0021668558 scopus 로고
    • A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast. 5-Fluoro-orotic acid resistance
    • Boeke, J. D., LaCroute, F., and Fink, G. R. (1984) A positive selection for mutants lacking orotidine-5'-phosphate decarboxylase activity in yeast. 5-Fluoro-orotic acid resistance. Mol. Gen. Genet. 197, 345-346
    • (1984) Mol. Gen. Genet. , vol.197 , pp. 345-346
    • Boeke, J.D.1    Lacroute, F.2    Fink, G.R.3
  • 32
    • 0346515712 scopus 로고    scopus 로고
    • Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae
    • Kireeva, M. L., Lubkowska, L., Komissarova, N., and Kashlev, M. (2003) Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae. Methods in enzymology 370, 138-155
    • (2003) Methods in Enzymology , vol.370 , pp. 138-155
    • Kireeva, M.L.1    Lubkowska, L.2    Komissarova, N.3    Kashlev, M.4
  • 33
    • 84861900573 scopus 로고    scopus 로고
    • Isolation and characterization of transcription fidelity mutants
    • Strathern, J. N., Jin, D. J., Court, D. L., and Kashlev, M. (2012) Isolation and characterization of transcription fidelity mutants. Biochim. Biophys. Acta 1819, 694-699
    • (2012) Biochim. Biophys. Acta , vol.1819 , pp. 694-699
    • Strathern, J.N.1    Jin, D.J.2    Court, D.L.3    Kashlev, M.4
  • 35
    • 79954601990 scopus 로고    scopus 로고
    • Regulation of gene expression by reiterative transcription
    • Turnbough, C. L., Jr. (2011) Regulation of gene expression by reiterative transcription. Curr. Opin. Microbiol. 14, 142-147
    • (2011) Curr. Opin. Microbiol. , vol.14 , pp. 142-147
    • Turnbough Jr., C.L.1
  • 36
    • 73649143880 scopus 로고    scopus 로고
    • Transcription elongation complex stability. The topological lock
    • Liu, X., and Martin, C. T. (2009) Transcription elongation complex stability. The topological lock. J. Biol. Chem. 284, 36262-36270
    • (2009) J. Biol. Chem. , vol.284 , pp. 36262-36270
    • Liu, X.1    Martin, C.T.2


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