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Volumn 7, Issue 4, 2012, Pages

The origin of the 'mycoplasma mycoides cluster' coincides with domestication of ruminants

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BASE PAIRING; BOVIDS; DEMOGRAPHY; DOMESTICATION; GENE SEQUENCE; HOUSEKEEPING GENE; MOLECULAR EVOLUTION; MULTILOCUS SEQUENCE TYPING; MYCOPLASMA CAPRICOLUM; MYCOPLASMA LEACHII; MYCOPLASMA MYCOIDES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; UNINDEXED SEQUENCE; ANIMAL; DOMESTIC ANIMAL; GENETICS; GEOGRAPHY; MICROBIOLOGY; SEQUENCE ALIGNMENT;

EID: 84860479162     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0036150     Document Type: Article
Times cited : (65)

References (45)
  • 2
    • 84860493524 scopus 로고
    • Contagious Bovine Pleuropneumonia
    • In: Greig JR, Mohler JR, Eichhorn A, editors, London, Balliere, Tindal and Cox
    • Hutyra F, Marek J, Manninger R, (1938) Contagious Bovine Pleuropneumonia. In: Greig JR, Mohler JR, Eichhorn A, editors. London Balliere, Tindal and Cox.
    • (1938)
    • Hutyra, F.1    Marek, J.2    Manninger, R.3
  • 3
    • 33845304680 scopus 로고    scopus 로고
    • The origins, spread and disappearance of contagious bovine pleuro-pneumonia in New Zealand
    • Fisher J, (2006) The origins, spread and disappearance of contagious bovine pleuro-pneumonia in New Zealand. Aust Vet J 84: 439-444.
    • (2006) Aust Vet J , vol.84 , pp. 439-444
    • Fisher, J.1
  • 5
    • 67651123144 scopus 로고    scopus 로고
    • Mycoplasma leachii sp. nov. as a new species designation for Mycoplasma sp. bovine group 7 of Leach, and reclassification of Mycoplasma mycoides subsp. mycoides LC as a serovar of Mycoplasma mycoides subsp. capri
    • Manso-Silvan L, Vilei EM, Sachse K, Djordjevic SP, Thiaucourt F, et al. (2009) Mycoplasma leachii sp. nov. as a new species designation for Mycoplasma sp. bovine group 7 of Leach, and reclassification of Mycoplasma mycoides subsp. mycoides LC as a serovar of Mycoplasma mycoides subsp. capri. Int J Syst Evol Microbiol 59: 1353-1358.
    • (2009) Int J Syst Evol Microbiol , vol.59 , pp. 1353-1358
    • Manso-Silvan, L.1    Vilei, E.M.2    Sachse, K.3    Djordjevic, S.P.4    Thiaucourt, F.5
  • 6
    • 0642285654 scopus 로고    scopus 로고
    • Use of rpoB sequences for phylogenetic study of Mycoplasma species
    • Kim KS, Ko KS, Chang MW, Hahn TW, Hong SK, et al. (2003) Use of rpoB sequences for phylogenetic study of Mycoplasma species. FEMS Microbiol Lett 226: 299-305.
    • (2003) FEMS Microbiol Lett , vol.226 , pp. 299-305
    • Kim, K.S.1    Ko, K.S.2    Chang, M.W.3    Hahn, T.W.4    Hong, S.K.5
  • 7
    • 33845351192 scopus 로고    scopus 로고
    • Mycoplasma mycoides subsp. capri and Mycoplasma mycoides subsp. mycoides LC can be grouped into a single subspecies
    • Vilei EM, Korczak BM, Frey J, (2006) Mycoplasma mycoides subsp. capri and Mycoplasma mycoides subsp. mycoides LC can be grouped into a single subspecies. Vet Res 37: 779-790.
    • (2006) Vet Res , vol.37 , pp. 779-790
    • Vilei, E.M.1    Korczak, B.M.2    Frey, J.3
  • 8
    • 35648968090 scopus 로고    scopus 로고
    • Phylogeny of the Mycoplasma mycoides cluster based on analysis of five conserved protein-coding sequences and possible implications for the taxonomy of the group
    • Manso-Silvan L, Perrier X, Thiaucourt F, (2007) Phylogeny of the Mycoplasma mycoides cluster based on analysis of five conserved protein-coding sequences and possible implications for the taxonomy of the group. Int J Syst Evol Microbiol 57: 2247-2258.
    • (2007) Int J Syst Evol Microbiol , vol.57 , pp. 2247-2258
    • Manso-Silvan, L.1    Perrier, X.2    Thiaucourt, F.3
  • 9
    • 78650306441 scopus 로고    scopus 로고
    • Variable Number Tandem Repeat (VNTR) analysis reveals genetic diversity within Mycoplasma mycoides mycoides Small Colony isolates from Nigeria
    • Nwankpa ND, Manso-Silvan L, Lorenzon S, Yaya A, Lombin LH, et al. (2010) Variable Number Tandem Repeat (VNTR) analysis reveals genetic diversity within Mycoplasma mycoides mycoides Small Colony isolates from Nigeria. Vet Microbiol 146 (3-4): 354-355.
    • (2010) Vet Microbiol , vol.146 , Issue.3-4 , pp. 354-355
    • Nwankpa, N.D.1    Manso-Silvan, L.2    Lorenzon, S.3    Yaya, A.4    Lombin, L.H.5
  • 10
    • 39049092810 scopus 로고    scopus 로고
    • Genotyping of Mycoplasma mycoides subsp. mycoides SC by multilocus sequence analysis allows molecular epidemiology of contagious bovine pleuropneumonia
    • Yaya A, Manso-Silvan L, Blanchard A, Thiaucourt F, (2008) Genotyping of Mycoplasma mycoides subsp. mycoides SC by multilocus sequence analysis allows molecular epidemiology of contagious bovine pleuropneumonia. Vet Res 39: 14.
    • (2008) Vet Res , vol.39 , pp. 14
    • Yaya, A.1    Manso-Silvan, L.2    Blanchard, A.3    Thiaucourt, F.4
  • 11
    • 80053560335 scopus 로고    scopus 로고
    • Multi-locus sequence analysis of Mycoplasma capricolum subsp. capripneumoniae for the molecular epidemiology of contagious caprine pleuropneumonia
    • Manso-Silvan L, Dupuy V, Chu Y, Thiaucourt F, (2011) Multi-locus sequence analysis of Mycoplasma capricolum subsp. capripneumoniae for the molecular epidemiology of contagious caprine pleuropneumonia. Veterinary research 42: 86.
    • (2011) Veterinary Research , vol.42 , pp. 86
    • Manso-Silvan, L.1    Dupuy, V.2    Chu, Y.3    Thiaucourt, F.4
  • 12
    • 79952453160 scopus 로고    scopus 로고
    • Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective
    • Thiaucourt F, Manso-Silvan L, Salah W, Barbe V, Vacherie B, et al. (2011) Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective. BMC genomics 12: 114.
    • (2011) BMC Genomics , vol.12 , pp. 114
    • Thiaucourt, F.1    Manso-Silvan, L.2    Salah, W.3    Barbe, V.4    Vacherie, B.5
  • 14
    • 0037423837 scopus 로고    scopus 로고
    • Traces of human migrations in Helicobacter pylori populations
    • Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, et al. (2003) Traces of human migrations in Helicobacter pylori populations. Science 299: 1582-1585.
    • (2003) Science , vol.299 , pp. 1582-1585
    • Falush, D.1    Wirth, T.2    Linz, B.3    Pritchard, J.K.4    Stephens, M.5
  • 15
    • 0242354083 scopus 로고    scopus 로고
    • DNA markers reveal the complexity of livestock domestication
    • Bruford MW, Bradley DG, Luikart G, (2003) DNA markers reveal the complexity of livestock domestication. Nature reviews Genetics 4: 900-910.
    • (2003) Nature Reviews Genetics , vol.4 , pp. 900-910
    • Bruford, M.W.1    Bradley, D.G.2    Luikart, G.3
  • 18
    • 0034708628 scopus 로고    scopus 로고
    • The initial domestication of goats (Capra hircus) in the Zagros mountains 10,000 years ago
    • Zeder MA, Hesse B, (2000) The initial domestication of goats (Capra hircus) in the Zagros mountains 10,000 years ago. Science 287: 2254-2257.
    • (2000) Science , vol.287 , pp. 2254-2257
    • Zeder, M.A.1    Hesse, B.2
  • 19
    • 34249650773 scopus 로고    scopus 로고
    • Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome
    • Sirand-Pugnet P, Lartigue C, Marenda M, Jacob D, Barre A, et al. (2007) Being pathogenic, plastic, and sexual while living with a nearly minimal bacterial genome. PLoS Genet 3: e75.
    • (2007) PLoS Genet , vol.3
    • Sirand-Pugnet, P.1    Lartigue, C.2    Marenda, M.3    Jacob, D.4    Barre, A.5
  • 20
    • 17144426887 scopus 로고    scopus 로고
    • Mycoplasma bovis shares insertion sequences with Mycoplasma agalactiae and Mycoplasma mycoides subsp. mycoides SC: Evolutionary and developmental aspects
    • Thomas A, Linden A, Mainil J, Bischof DF, Frey J, et al. (2005) Mycoplasma bovis shares insertion sequences with Mycoplasma agalactiae and Mycoplasma mycoides subsp. mycoides SC: Evolutionary and developmental aspects. FEMS Microbiol Lett 245: 249-255.
    • (2005) FEMS Microbiol Lett , vol.245 , pp. 249-255
    • Thomas, A.1    Linden, A.2    Mainil, J.3    Bischof, D.F.4    Frey, J.5
  • 21
    • 0035801995 scopus 로고    scopus 로고
    • Molecular analysis of field strains of Mycoplasma capricolum subspecies capripneumoniae and Mycoplasma mycoides subspecies mycoides, small colony type isolated from goats in Tanzania
    • Kusiluka LJ, Ojeniyi B, Friis NF, Kokotovic B, Ahrens P, (2001) Molecular analysis of field strains of Mycoplasma capricolum subspecies capripneumoniae and Mycoplasma mycoides subspecies mycoides, small colony type isolated from goats in Tanzania. Vet Microbiol 82: 27-37.
    • (2001) Vet Microbiol , vol.82 , pp. 27-37
    • Kusiluka, L.J.1    Ojeniyi, B.2    Friis, N.F.3    Kokotovic, B.4    Ahrens, P.5
  • 22
    • 0034653425 scopus 로고    scopus 로고
    • Phylogeny of the Mycoplasma mycoides cluster as shown by sequencing of a putative membrane protein gene
    • Thiaucourt F, Lorenzon S, David A, Breard A, (2000) Phylogeny of the Mycoplasma mycoides cluster as shown by sequencing of a putative membrane protein gene. Vet Microbiol 72: 251-268.
    • (2000) Vet Microbiol , vol.72 , pp. 251-268
    • Thiaucourt, F.1    Lorenzon, S.2    David, A.3    Breard, A.4
  • 23
    • 0020711367 scopus 로고
    • Caprine mycoplasmosis: widespread infection in goats with Mycoplasma mycoides subsp mycoides (large-colony type)
    • DaMassa AJ, Brooks DL, Adler HE, (1983) Caprine mycoplasmosis: widespread infection in goats with Mycoplasma mycoides subsp mycoides (large-colony type). American journal of veterinary research 44: 322-325.
    • (1983) American Journal of Veterinary Research , vol.44 , pp. 322-325
    • DaMassa, A.J.1    Brooks, D.L.2    Adler, H.E.3
  • 26
    • 33745282930 scopus 로고    scopus 로고
    • Sex and virulence in Escherichia coli: an evolutionary perspective
    • Wirth T, Falush D, Lan R, Colles F, Mensa P, et al. (2006) Sex and virulence in Escherichia coli: an evolutionary perspective. Molecular microbiology 60: 1136-1151.
    • (2006) Molecular Microbiology , vol.60 , pp. 1136-1151
    • Wirth, T.1    Falush, D.2    Lan, R.3    Colles, F.4    Mensa, P.5
  • 27
    • 37249039556 scopus 로고    scopus 로고
    • Multilocus sequence typing (MLST) of Mycoplasma hyopneumoniae: a diverse pathogen with limited clonality
    • Mayor D, Jores J, Korczak BM, Kuhnert P, (2008) Multilocus sequence typing (MLST) of Mycoplasma hyopneumoniae: a diverse pathogen with limited clonality. Vet Microbiol 127: 63-72.
    • (2008) Vet Microbiol , vol.127 , pp. 63-72
    • Mayor, D.1    Jores, J.2    Korczak, B.M.3    Kuhnert, P.4
  • 28
    • 13144252236 scopus 로고    scopus 로고
    • Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms
    • Maiden MC, Bygraves JA, Feil E, Morelli G, Russell JE, et al. (1998) Multilocus sequence typing: a portable approach to the identification of clones within populations of pathogenic microorganisms. Proc Natl Acad Sci U S A 95: 3140-3145.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 3140-3145
    • Maiden, M.C.1    Bygraves, J.A.2    Feil, E.3    Morelli, G.4    Russell, J.E.5
  • 29
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 30
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • Watterson GA, (1975) On the number of segregating sites in genetical models without recombination. Theoretical population biology 7: 256-276.
    • (1975) Theoretical Population Biology , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 31
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F, (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 32
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu YX, (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 33
    • 0035692320 scopus 로고    scopus 로고
    • Two-locus sampling distributions and their application
    • Hudson RR, (2001) Two-locus sampling distributions and their application. Genetics 159: 1805-1817.
    • (2001) Genetics , vol.159 , pp. 1805-1817
    • Hudson, R.R.1
  • 34
    • 0036199914 scopus 로고    scopus 로고
    • A coalescent-based method for detecting and estimating recombination from gene sequences
    • McVean G, Awadalla P, Fearnhead P, (2002) A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160: 1231-1241.
    • (2002) Genetics , vol.160 , pp. 1231-1241
    • McVean, G.1    Awadalla, P.2    Fearnhead, P.3
  • 35
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard JK, Stephens M, Donnelly P, (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 36
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies
    • Falush D, Stephens M, Pritchard JK, (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164: 1567-1587.
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 37
    • 1342331102 scopus 로고    scopus 로고
    • DISTRUCT: a program for the graphical display of population structure
    • Rosenberg NA, (2004) DISTRUCT: a program for the graphical display of population structure. Molecular Ecology Notes 4: 137-138.
    • (2004) Molecular Ecology Notes , vol.4 , pp. 137-138
    • Rosenberg, N.A.1
  • 38
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: software package for data analysis in molecular biology and evolution
    • Xia X, Xie Z, (2001) DAMBE: software package for data analysis in molecular biology and evolution. The Journal of heredity 92: 371-373.
    • (2001) The Journal of Heredity , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 39
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F, Huelsenbeck JP, (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 40
    • 45849154165 scopus 로고    scopus 로고
    • jModelTest: phylogenetic model averaging
    • Posada D, (2008) jModelTest: phylogenetic model averaging. Mol Biol Evol 25: 1253-1256.
    • (2008) Mol Biol Evol , vol.25 , pp. 1253-1256
    • Posada, D.1
  • 42
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
    • Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic biology 59: 307-321.
    • (2010) Systematic Biology , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5
  • 43
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC evolutionary biology 7: 214.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 44
    • 0141782131 scopus 로고    scopus 로고
    • To kill or not to kill: the eradication of contagious bovine pleuro-pneumonia in western Europe
    • Fisher J, (2003) To kill or not to kill: the eradication of contagious bovine pleuro-pneumonia in western Europe. Med Hist 47: 314-331.
    • (2003) Med Hist , vol.47 , pp. 314-331
    • Fisher, J.1
  • 45


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