Isolation and molecular characterization of 1-Aminocyclopropane-1-carboxylic acid synthase genes in Hevea brasiliensis

International Journal of Molecular Sciences

Volumn 16, Issue 2, 2015, Pages 4136-4149

  Zhu, Jia Hong ^a   Xu, Jing ^b   Chang, Wen Jun ^a   Zhang, Zhi Li ^a,b  

^a INSTITUTE OF TROPICAL BIOSCIENCE AND BIOTECHNOLOGY   (China)

^b Farm Produce Processing and Design Research Institute Hainan Academy of Agricultural Sciences   (China)

Author keywords

1 aminocyclopropane 1 carboxylic acid synthase; Ethylene; Gene expression; Hevea brasiliensis

Indexed keywords

1 AMINOCYCLOPROPANE 1 CARBOXYLIC ACID SYNTHASE; CAT BOX PROTEIN; CIS ACTING ELEMENT; ISOENZYME; MITOGEN ACTIVATED PROTEIN KINASE; PEPTIDES AND PROTEINS; PROTEIN; PROTEIN KINASE C; SKN 1 PROTEIN; TRANSCRIPTION FACTOR GCN4; UNCLASSIFIED DRUG; 1-AMINOCYCLOPROPANECARBOXYLATE SYNTHASE; ETHYLENE; ETHYLENE DERIVATIVE; LYASE; RECOMBINANT PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; ENZYME SPECIFICITY; ENZYME STRUCTURE; EXON; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE ISOLATION; GENE SEQUENCE; GENETIC TRAIT; HEVEA BRASILIENSIS; INTRON; MOLECULAR CLONING; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENY; PROMOTER REGION; PROTEIN PHOSPHORYLATION; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; BIOSYNTHESIS; CHEMISTRY; CLASSIFICATION; DRUG EFFECTS; ENZYMOLOGY; GENETICS; HEVEA; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; PLANT GENE; UPREGULATION;

HEVEA BRASILIENSIS;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; ETHYLENES; GENES, PLANT; HEVEA; LYASES; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROMOTER REGIONS, GENETIC; RECOMBINANT PROTEINS; SEQUENCE ALIGNMENT; UP-REGULATION;

EID: 84923113019     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms16024136     Document Type: Article

References (41)

1. Wang, F.; Cui, X.; Sun, Y.; Dong, C.H. Ethylene signaling and regulation in plant growth and stress responses. Plant Cell Rep. 2013, 32, 1099-1109.
2. Huang, S.J.; Chang, C.L.; Wang, P.H.; Tsai, M.C.; Hsu, P.H.; Chang, I.F. A type III ACC synthase, ACS7, is involved in root gravitropism in Arabidopsis thaliana. J. Exp. Bot. 2013, 64, 4343-4360.
3. Adams, D.O.; Yang, S.F. Ethylene biosynthesis: Identification of 1-aminocyclopropane-1-carboxylic acid as an intermediate in the conversion of methionine to ethylene. Proc. Natl. Acad. Sci. USA. 1979, 76, 170-174.
4. Lin, Z.F.; Zhong, S.L.; Grierson, D. Recent advances in ethylene research. J. Exp. Bot. 2009, 60, 3311-3336.
5. Liu, Y.; Zhang, S. Phosphorylation of 1-aminocyclopropane-1-carboxylic acid synthase by MPK6, a stress-responsive mitogen-activated protein kinase, induces ethylene biosynthesis in Arabidopsis. Plant Cell 2004, 16, 3386-3399.
6. Choudhury, S.R.; Roy, S.; Sengupta, D.N. C-Terminal phosphorylation is essential for regulation of ethylene synthesizing ACC synthase enzyme. Plant Signal. Behav. 2013, 8, 491-511.
7. Yamagami, T.; Tsuchisaka, A.; Yamada, K.; Haddon, W.F.; Harden, L.A.; Theologis, A. Biochemical diversity among the 1-amino-cyclopropane-1-carboxylate synthase isozymes encoded by the Arabidopsis gene family. J. Biol. Chem. 2003, 278, 49102-49112.
8. Peng, H.P.; Lin, T.Y.; Wang, N.N.; Shih, M.C. Differential expression of genes encoding 1-aminocyclopropane-1-carboxylate synthase in Arabidopsis during hypoxia. Plant Mol. Biol. 2005, 58, 15-25.
9. Wang, N.N.; Shih, M.C.; Li, N. The GUS reporter-aided analysis of the promoter activities of Arabidopsis ACC synthase genes AtACS4, AtACS5, and AtACS7 induced by hormones and stresses. J. Exp. Bot. 2005, 56, 909-920.
10. Sato, T.; Theologis, A. Cloning the mRNA encoding 1-aminocyclopropane-1-carboxylate synthase, the key enzyme for ethylene biosynthesis in plants. Proc. Natl. Acad. Sci. USA 1989, 86, 6621-6625.
11. El-Sharkawy, I.; Kim, W.S.; Jayasankar, S.; Svircev, A.M.; Brown, D.C. Differential regulation of four members of the ACC synthase gene family in plum. J. Exp. Bot. 2008, 59, 2009-2027.
12. Kamiyoshihara, Y.; Iwata, M.; Fukaya, T.; Tatsuki, M.; Mori, H. Turnover of LeACS2, a wound-inducible1-aminocyclopropane-1-carboxylic acid synthase in tomato, is regulated by phosphorylation/dephosphorylation. Plant J. 2010, 64, 140-150.
13. Harada, T.; Murakoshi, Y.; Torii, Y.; Tanase, K.; Onozaki, T.; Morita, S.; Masumura, T.; Satoh, S. Analysis of genomic DNA of DcACS1, a 1-aminocyclopropane-1-carboxylate synthase gene, expressed in senescing petals of carnation (Dianthus caryophyllus) and its orthologous genes in D. superbus var. longicalycinus. Plant Cell Rep. 2011, 30, 519-527.
14. D' Auzac, J.; Jacob, J.L.; Prevot, J.C.; Clement, A.; Gallois, R.; Crestin, H.; Lacote, R.; Pujade Renaud, V.; Gohet, E. The regulation of cis-polyisoprene production natural rubber from Hevea brasiliensis. Recent Res. Dev. Plant Physiol. 1997, 1, 273-332.
15. Hao, B.Z.; Wu, J.L. Laticifer differentiation in Hevea brasiliensis: Induction by exogenous jasmonic acid and linolenic acid. Ann. Bot. 2000, 85, 37-43.
16. Dusotoit-Coucaud, A.; Brunel, N.; Kongsawadworakul, P.; Viboonjun, U.; Lacointe, A.; Julien, J.L.; Chrestin, H.; Sakr, S. Sucrose importation into laticifers of Hevea brasiliensis, in relation to ethylene stimulation of latex production. Ann. Bot. 2009, 104, 635-647.
17. Fan, S.W.; Yang, S.Q. Ethylene physiology of Hevea brasiliensis. Trop. Crop Res. 1991, 12, 69-77.
18. Zhu, J.H., Zhang, Z.L. Ethylene stimulation of latex production in Hevea brasiliensis. Plant Signal. Behav. 2009, 4, 1-3.
19. Duan, C.; Argout, X.; Gébelin, V.; Summo, M.; Dufayard, J.F.; Leclercq, J.; Kuswanhadi; Piyatrakul, P.; Pirrello, J.; Rio, M.; et al. Identification of the Hevea brasiliensis AP2/ERF superfamily by RNA sequencing. BMC Genomics 2013, 14, 30.
20. Kuswanhadi Leclercq, J.; Rio, M.; Tregear, J.; Ducamp-Collin, M.N.; Montoro, P. Isolation of three members of the multigene family encoding ACC oxidases in Hevea brasiliensis and investigation of their responses to ethylene stimulation and wounding. J. Rubber Res. 2010, 13, 185-205.
21. Piyatrakul, P.; Putranto, R.A.; Martin, F.; Rio, M.; Dessailly, F.; Leclercq, J.; Dufayard, J.F.; Lardet, L.; Montoro, P. Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis. BMC Plant Biol. 2012, 12, 244.
22. Triwitayakorn, K.; Chatkulkawin, P.; Kanjanawattanawong, S.; Sraphet, S.; Yoocha, T.; Sangsrakru, D.; Chanprasert, J.; Ngamphiw, C.; Jomchai, N.; Therawattanasuk, K.; et al. Transcriptome sequencing of Hevea brasiliensis for development of microsatellite markers and construction of a genetic linkage map. DNA Res. 2011, 18, 471-482.
23. Xia, Z.; Xu, H.; Zhai, J.; Li, D.; Luo, H.; He, C.; Huang, X. RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis. Plant Mol. Biol. 2011, 77, 299-308.
24. Li, D.; Deng, Z.; Qin, B.; Liu, X.; Men, Z. De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.). BMC Genomics 2012, 13, 192.
25. Lertpanyasampatha, M.; Gao, L.; Kongsawadworakul, P.; Viboonjun, U.; Chrestin, H.; Liu, R.; Chen, X.; Narangajavana, J. Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing. Planta 2012, 236, 437-445.
26. Rahman, A.Y.; Usharraj, A.O.; Misra, B.B.; Thottathil, G.P.; Jayasekaran, K.; Feng, Y.; Hou, S.; Ong, S.Y.; Ng, F.L.; Lee, L.S.; et al. Draft genome sequence of the rubber tree Hevea brasiliensis. BMC Genomics 2013, 14, 75.
27. Tamura, K.; Stecher, G.; Peterson, D.; Filipski, A.; Kumar, S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 2013, 30, 2725-2729.
28. Hidalgo, M.S.P.; Tecson-Mendoza, E.M.; Laurena, A.C.; Botella, J.R. Hybrid "Sinta" Papaya exhibits unique ACC synthase 1 cDNA isoforms. J. Biochem. Mol. Biol. 2005, 38, 320-327.
29. Xu, M.H.; Wang, M.H. Genome-wide analysis of 1-amino-cyclopropane-1-carboxylate synthase gene family in Arabidopsis, rice, grapevine and poplar. Afr. J. Biotechnol. 2012, 11, 1106-1118.
30. Chae, H.S.; Kieber, J.J. Eto Brute? Role of ACS turnover in regulating ethylene biosynthesis. Trends Plant Sci. 2005, 10, 291-296.
31. Tatsuki, M.; Mori, H. Phosphorylation of tomato 1-aminocyclopropane-1-carboxylic acid synthase, LE-ACS2, at the C-terminal region. J. Biol. Chem. 2001, 276, 28051-28057.
32. Lyzenga, W.J.; Stone, S.L. Regulation of ethylene biosynthesis through protein degradation. Plant Signal. Behav. 2012, 7, 1438-1442.
33. Jones, M.L.; Woodson, W.R. Differential expression of three members of the 1-aminocyclopropane-1-carboxylate synthase gene family in carnation. Plant Physiol. 1999, 119, 755-764.
34. Luo, X.; Chen, Z.; Gao, J.; Gong, Z. Abscisic acid inhibits root growth in Arabidopsis through ethylene biosynthesis. Plant J. 2014 79, 44-55.
35. Joseph, R.E. Reentry of the ethylene MPK6 module. Plant Cell. 2004, 16, 3169-3173.
36. Van de Poel, B.; van der Straeten, D. 1-Aminocyclopropane-1-carboxylic acid (ACC) in plants: More than just theprecursor of ethylene. Front. Plant Sci. 2014, 5, 640.
37. Allen, G.C.; Flores-Vergara, M.A.; Krasynanski, S.; Kumar, S.; Thompson, W.F. A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. Nat. Protoc. 2006, 1, 2320-2325.
38. Tang, C.; Qi, J.; Li, H.; Zhang, C.; Wang, Y. A convenient and efficient protocol for isolating high quality RNA from latex of Hevea brasiliensis (para rubber tree). J. Biochem. Biophys. Methods 2007, 70, 749-754.
39. Deng, L.H.; Luo, M.W.; Zhang, C.F.; Zeng, H.C. Extraction of high-quality RNA from rubber tree leaves. Biosci. Biotechnol. Biochem. 2012, 76, 1394-1396. 40. Li, H.; Qin, Y.; Xiao, X.; Tang, C. Screening of valid reference genes for real-time RT-PCR data normalization in Hevea brasiliensis and expression validation of a sucrose transporter gene HbSUT3. Plant Sci. 2011, 181, 132-139.
40. Xiao, X.; Tang, C.; Fang, Y.; Yang, M.; Zhou, B.; Qi, J.; Zhang, Y. Structure and expression profile of the sucrose synthase gene family in the rubber tree: Indicative of roles in stress response and sucrose utilization in the laticifers. FEBS J. 2014, 281, 291-305.
41. Remans, T.; Smeets, K.; Opdenakker, K.; Mathijsen, D.; Vangronsveld, J.; Cuypers, A. Normalisation of real-time RT-PCR gene expression measurements in Arabidopsis thaliana exposed to increased metal concentrations. Planta 2008, 227, 1343-1349.