Some ethylene biosynthesis and AP2/ERF genes reveal a specific pattern of expression during somatic embryogenesis in Hevea brasiliensis

BMC Plant Biology

Volumn 12, Issue , 2012, Pages

  Piyatrakul, Piyanuch ^a,b   Putranto, Riza Arief ^a,c   Martin, Florence ^a   Rio, Maryannick ^a   Dessailly, Florence ^a   Leclercq, Julie ^a   Dufayard, Jean François ^a   Lardet, Ludovic ^a   Montoro, Pascal ^a  

^a UMR AGAP   (France)

^b Rubber Research Institute   (Thailand)

^c Indonesian Biotechnology Research Institute for Estate Crops   (Indonesia)

Author keywords

Gene expression; Plant hormone; Plant regeneration; Recalcitrant; Rubber; Signalling; Transcription factor

Indexed keywords

ARABIDOPSIS; HEVEA; HEVEA BRASILIENSIS;

ETHYLENE; ETHYLENE DERIVATIVE; PLANT RNA; TRANSCRIPTION FACTOR; TRANSCRIPTOME; VEGETABLE PROTEIN;

ARABIDOPSIS; ARTICLE; BIOSYNTHESIS; GENE EXPRESSION REGULATION; GENETICS; HEVEA; MULTIGENE FAMILY; PHYLOGENY; PLANT GENE; SOMATIC EMBRYOGENESIS;

ARABIDOPSIS; ETHYLENES; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; HEVEA; MULTIGENE FAMILY; PHYLOGENY; PLANT PROTEINS; PLANT SOMATIC EMBRYOGENESIS TECHNIQUES; RNA, PLANT; TRANSCRIPTION FACTORS; TRANSCRIPTOME;

MLCS; MLOWN;

EID: 84871486643     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-12-244     Document Type: Article

References (91)

1. Mc Cown BH. Recalcitrance of woody and herbaceous prennial plants: dealing with genetic predeterminism. In Vitro Cell Dev Biol-Plant 2000, 36:149-154.
2. Benson E. In vitro plant recalcitrance. Do free radicals have a role in plant tissue culture recalcitrance. In Vitro Cell Dev Biol-Plant 2000, 36:163-170.
3. Benson E. In vitro plant recalcitrance: an introduction. In Vitro Cell Dev Biol-Plant 2000, 36:141-148.
4. Michaux-Ferrière N, Carron M-P. Histology of early somatic embryogenesis in Hevea brasiliensis: the importance of the timing of subculturing. Plant Cell Tissue and Organ Culture 1989, 19:243-256.
5. Tisserat B, Murashige T. Effects of ethephon, ethylene, and 2,4-dichlorophenoxyacetic Acid on asexual embryogenesis in vitro. Plant Physiol 1977, 60(3):437-439. 10.1104/pp.60.3.437, 542632, 16660109.
6. Imin N, Goffard N, Nizamidin M, Rolfe BG. Genome-wide transcriptional analysis of super-embryogenic Medicago truncatula explant cultures. BMC Plant Biol 2008, 8:110. 10.1186/1471-2229-8-110, 2605756, 18950541.
7. Feng BH, Wu B, Zhang CR, Huang X, Chen YF, Huang XL. Cloning and expression of 1-aminocyclopropane-1-carboxylate oxidase cDNA induced by thidiazuron during somatic embryogenesis of alfalfa (Medicago sativa). J Plant Physiol 2012, 169(2):176-182. 10.1016/j.jplph.2011.08.016, 22118816.
8. Karami O, Saidi A. The molecular basis for stress-induced acquisition of somatic embryogenesis. Mol Biol Rep 2010, 37(5):2493-2507. 10.1007/s11033-009-9764-3, 19705297.
9. Mantiri FR, Kurdyukov S, Lohar DP, Sharopova N, Saeed NA, Wang XD, Vandenbosch KA, Rose RJ. The transcription factor MtSERF1 of the ERF subfamily identified by transcriptional profiling is required for somatic embryogenesis induced by auxin plus cytokinin in Medicago truncatula. Plant Physiol 2008, 146(4):1622-1636. 10.1104/pp.107.110379, 2287338, 18235037.
10. El Meskaoui A, Tremblay FM. Involvement of ethylene in the maturation of black spruce embryogenic cell lines with different maturation capacities. J Exp Bot 2001, 52(357):761-769.
11. Ke{ogonek}pczyńska E, Ruduś I, Ke{ogonek}pczyński J. Abscisic acid and methyl jasmonate as regulators of ethylene biosynthesis during somatic embryogenesis of Medicago sativa L. Acta Physiol Plant 2009, 31(6):1263-1270.
12. Mantiri FR, Kurdyukov S, Chen SK, Rose RJ. The transcription factor MtSERF1 may function as a nexus between stress and development in somatic embryogenesis in Medicago truncatula. Plant Signal Behav 2008, 3(7):498-500. 10.4161/psb.3.7.6049, 2634442, 19704498.
13. Banno H, Ikeda Y, Niu QW, Chua NH. Overexpression of Arabidopsis ESR1 induces initiation of shoot regeneration. Plant Cell 2001, 13(12):2609-2618. 139476, 11752375.
14. Kirch T, Simon R, Grunewald M, Werr W. The DORNROSCHEN/ENHANCER OF SHOOT REGENERATION1 gene of Arabidopsis acts in the control of meristem ccll fate and lateral organ development. Plant Cell 2003, 15(3):694-705. 10.1105/tpc.009480, 150023, 12615942.
15. Ikeda Y, Banno H, Niu QW, Howell SH, Chua NH. The ENHANCER OF SHOOT REGENERATION 2 gene in Arabidopsis regulates CUP-SHAPED COTYLEDON 1 at the transcriptional level and controls cotyledon development. Plant Cell Physiol 2006, 47(11):1443-1456. 10.1093/pcp/pcl023, 17056621.
16. Lau S, Slane D, Herud O, Kong J, Jurgens G. Early embryogenesis in flowering plants: setting up the basic body pattern. Annu Rev Plant Biol 2012, 63(1):483-506. 10.1146/annurev-arplant-042811-105507, 22224452.
17. El Ouakfaoui S, Schnell J, Abdeen A, Colville A, Labbe H, Han S, Baum B, Laberge S, Miki B. Control of somatic embryogenesis and embryo development by AP2 transcription factors. Plant Mol Biol 2010, 74(4-5):313-326. 10.1007/s11103-010-9674-8, 2952763, 20798978.
18. Boutilier K, Offringa R. Ectopic expression of BABY BOOM triggers a conversion from vegetative to embryonic growth. Plant Cell 2002, 14:1737-1749. 10.1105/tpc.001941, 151462, 12172019.
19. Elliott RC, Betzner AS, Huttner E, Oakes MP, Tucker WQ, Gerentes D, Perez P, Smyth DR. AINTEGUMENTA, an APETALA2-like gene of Arabidopsis with pleiotropic roles in ovule development and floral organ growth. Plant Cell 1996, 8(2):155-168. 161088, 8742707.
20. Cernac A, Andre C, Hoffmann-Benning S, Benning C. WRI1 is required for seed germination and seedling establishment. Plant Physiol 2006, 141(2):745-757. 10.1104/pp.106.079574, 1475460, 16632590.
21. Cernac A, Benning C. WRINKLED1 encodes an AP2/EREB domain protein involved in the control of storage compound biosynthesis in Arabidopsis. Plant J 2004, 40(4):575-585. 10.1111/j.1365-313X.2004.02235.x, 15500472.
22. Mudunkothge JS, Krizek BA. Three Arabidopsis AIL/PLT genes act in combination to regulate shoot apical meristem function. Plant J 2012, 71(1):108-121. 10.1111/j.1365-313X.2012.04975.x, 22380923.
23. Montoro P, Carron MP, Granet F, Lardet L, Leclercq J. Development of new varietal types based on rejuvenation by somatic embryogenesis and propagation by conventional budding or microcutting in Hevea brasiliensis. Acta Horticulturae 2012, 961:547.
24. Carron M-P, Etienne H, Michaux-Ferrière N, Montoro P. Somatic embryogenesis in rubber tree (Hevea brasiliensis Muell. Arg.). Somatic embryogenesis and synthetic seed 1, Volume 30 1995, 353-369. Berlin, Germany: Springer, Bajaj YPS.
25. Carron M-P, d'Auzac J, Etienne H, El Hadrami I, Housti F, Michaux-Ferrière N, Montoro P. Biochemical and histological features of somatic embryogenesis in Hevea brasiliensis. Indian J Natural Rubber Research 1992, 5:7-17.
26. Wang Z, Zeng C, Chen C, Wu H, Li Q, Fan G, Lu W. Induction of rubber plantlets from anther of Hevea brasiliensis. Chinese J Tropical Crops 1980, 1:25-26.
27. Chen Z. Rubber (Hevea). Handbook of Plant Cell Culture - Crop Species, Volume 2 1984, 546-571. Hants, England: Macmillan Publishing Company, Sharp E.
28. Carron M-P, Enjalric F. Embryogenese somatique à partir du tégument interne de la graine d'Hevea brasiliensis (Kunth., Muell. Arg.). Comptes Rendus des Séances de l'Académie des Sciences 1985, 300(17):653-658.
29. Lardet L, Dessailly F, Carron MP, Rio MA, Ferriere N, Montoro P. Secondary somatic embryogenesis in Hevea brasiliensis (Mull. Arg.): an alternative process for long-term somatic embryogenesis. J Rubber Research 2009, 12(4):215-228.
30. Auboiron E, Carron MP, Michaux-Ferrière N. Influence of atmospheric gases, particularly ethylene, on somatic embryogenesis of Hevea brasiliensis. IRCA/CIRAD Montpellier 1990, 21:31-37.
31. Carron MP, Lardet L, Granet F, Julien J, Teerawatanasuk K, Keli J, Dea BG, Leconte A, Montoro P. Field trials network emphasizes the improvement of growth and yield through micropropagation in rubber tree (Hevea brasiliensis Müll. ARG.). Acta Horticulturae 2009, 812:485-492.
32. Lardet L, Dessailly F, Carron MP, Montoro P, Monteuuis O. Influences of aging and cloning methods on the capacity for somatic embryogenesis of a mature Hevea brasiliensis genotype. Tree Physiol 2009, 29(2):291-298.
33. Lardet L, Martin F, Dessailly F, Carron MP, Montoro P. Effect of exogenous calcium on post-thaw growth recovery and subsequent plant regeneration of cryopreserved embryogenic calli of Hevea brasiliensis (Mull. Arg.). Plant Cell Rep 2007, 26(5):559-569. 10.1007/s00299-006-0278-3, 17186244.
34. Charbit E, Legavre T, Lardet L, Bourgeois E, Ferrière N, Carron MP. Identification of differentially expressed cDNA sequences and histological characteristics of #Hevea brasiliensis# calli in relation to their embryogenic and regenerative capacities. Plant Cell Rep 2004, 22:539-548. 10.1007/s00299-003-0737-z, 14625785.
35. Duan C, Argout X, Gébelin V, Summo M, Dufayard JF, Leclercq J, Rio M, Champion A, Montoro P. Identification of the Hevea brasiliensis AP2/ERF superfamily in latex. BMC Genomics 2013, 2013:2013. in press.
36. Putranto R, Sanier C, Leclercq J, Duan C, Rio M, Sabau X, Argout X, Montoro P. Differential spatial gene expression in different types of Hevea brasiliensis roots. Plant Sci 2012, 183:149-158.
37. Kuswanhadi, Leclercq J, Rio M, Tregear J, Ducamp-Collin MN, Montoro P. Isolation of three members of the multigene family encoding ACC oxidases in Hevea brasiliensis and investigation of their responses to ethylene stimulation and wounding. J Rubber Research 2010, 13(3):185-205.
38. Duan C, Rio M, Leclercq J, Bonnot F, Oliver G, Montoro P. Gene expression pattern in response to wounding, methyl jasmonate and ethylene in the bark of Hevea brasiliensis. Tree Physiol 2010, 30(10):1349-1358. 10.1093/treephys/tpq066, 20660491.
39. Engelmann F, Lartaud M, Chabrillange N, Carron M-P, Etienne H. Cryopreservation of embryogenic calluses of two commercial clones of Hevea brasiliensis. Cryo Letters 1997, 18:107-116.
40. Wang A, Tan D, Takahashi A, Li T, Harada T. MdERFs, two ethylene-response factors involved in apple fruit ripening. J Exp Bot 2007, 58:3743-3748. 10.1093/jxb/erm224, 18057044.
41. Babula D, Misztal L, Jakubowicz M, Kaczmarek M, Nowak W, Sadowski J. Genes involved in biosynthesis and signalisation of ethylene in Brassica oleraceaand Arabidopsis thaliana: identification and genome comparative mapping of specific gene homologues. TAG Theoretical and Applied Genetics 2006, 112(3):410-420.
42. Ecker J. The ethylene signal transduction pathway in plants. Science 1995, 268:667-675. 10.1126/science.7732375, 7732375.
43. Agarwal P, Agarwal P, Reddy M, Sopory S. Role of DREB transcription factors in abiotic and biotic stress tolerance in plants. Plant Cell Rep 2006, 25(12):1263-1274. 10.1007/s00299-006-0204-8, 16858552.
44. Liu Q, Kasuga M, Sakuma Y, Abe H, Miura H, Yamaguchi-Shinozaki K, Shinozaki K. Two Transcription Factors, DREB1 and DREB2, with an EREBP/AP2 DNA Binding Domain Separate Two Cellular Signal Transduction Pathways in Drought- and LowTemperature-Responsive Gene Expression, Respectively, in Arabidopsis. Plant Cell 1998, 10:1391-1406. 144379, 9707537.
45. Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K. AP2/ERF family transcription factors in plant abiotic stress responses. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms 2012, 1819(2):86-96.
46. Cheng MC, Hsieh EJ, Chen JH, Chen HY, Lin TP. Arabidopsis RGLG2, functioning as a RING E3 ligase, interacts with AtERF53 and negatively regulates the plant drought stress response. Plant Physiol 2012, 158(1):363-375. 10.1104/pp.111.189738, 3252077, 22095047.
47. Wilson K, Long D, Swinburne J, Coupland G. A dissociation insertion causes a semidominant mutation that increases expression of TINY, an Arabidopsis gene related to APETALA2. Plant Cell 1996, 8(4):659-671. 161127, 8624440.
48. Sun S, Yu J-P, Chen F, Zhao T-J, Fang X-H, Li Y-Q, Sui S-F. TINY, a Dehydration-responsive Element (DRE)-binding Protein-like Transcription Factor Connecting the DRE- and Ethylene-responsive Element-mediated Signaling Pathways in Arabidopsis. J Biol Chem 2008, 283(10):6261-6271. 10.1074/jbc.M706800200, 18089556.
49. Fujimoto SY, Ohta M, Usui A, Shinshi H, Ohme-Takagi M. Arabidopsis Ethylene-Responsive Element Binding Factors Act as Transcriptional Activators or Repressors of GCC Box-Mediated Gene Expression. The Plant Cell Online 2000, 12(3):393-404.
50. Sakuma Y, Maruyama K, Osakabe Y, Qin F, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. Functional analysis of an arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. The Plant Cell Online 2006, 18(5):1292-1309.
51. Lim CJ, Hwang JE, Chen H, Hong JK, Yang KA, Choi MS, Lee KO, Chung WS, Lee SY, Lim CO. Over-expression of the Arabidopsis DRE/CRT-binding transcription factor DREB2C enhances thermotolerance. Biochem Biophys Res Commun 2007, 362(2):431-436. 10.1016/j.bbrc.2007.08.007, 17716623.
52. Novillo F, Medina J, Salinas J. Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon. Proc Natl Acad Sci 2007, 104(52):21002-21007. 10.1073/pnas.0705639105, 2409256, 18093929.
53. Gilmour SJ, Fowler SG, Thomashow MF. Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities. Plant Mol Biol 2004, 54(5):767-781.
54. Haake V, Cook D, Riechmann J, Pineda O, Thomashow MF, Zhang JZ. Transcription Factor CBF4 Is a Regulator of Drought Adaptation in Arabidopsis. Plant Physiol 2002, 130(2):639-648. 10.1104/pp.006478, 166593, 12376631.
55. Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K. The DDF1 transcriptional activator upregulates expression of a gibberellin-deactivating gene, GA2ox7, under high-salinity stress in Arabidopsis. Plant J 2008, 56(4):613-626. 10.1111/j.1365-313X.2008.03627.x, 18643985.
56. Nakashima K, Shinwari ZK, Sakuma Y, Seki M, Miura S, Shinozaki K, Yamaguchi-Shinozaki K. Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high-salinity-responsive gene expression. Plant Mol Biol 2000, 42(4):657-665. 10.1023/A:1006321900483, 10809011.
57. Hinz M, Wilson IW, Yang J, Buerstenbinder K, Llewellyn D, Dennis ES, Sauter M, Dolferus R. Arabidopsis RAP2.2: an ethylene response transcription factor that is important for hypoxia survival. Plant Physiol 2010, 153(2):757-772. 10.1104/pp.110.155077, 2879770, 20357136.
58. Rashotte AM, Mason MG, Hutchison CE, Ferreira FJ, Schaller GE, Kieber JJ. A subset of Arabidopsis AP2 transcription factors mediates cytokinin responses in concert with a two-component pathway. Proc Natl Acad Sci 2006, 103(29):11081-11085. 10.1073/pnas.0602038103, 1544176, 16832061.
59. Schlereth A, Moller B, Liu W, Kientz M, Flipse J, Rademacher EH, Schmid M, Jurgens G, Weijers D. MONOPTEROS controls embryonic root initiation by regulating a mobile transcription factor. Nature 2010, 464(7290):913-916. 10.1038/nature08836, 20220754.
60. Xu Z-S, Chen M, Li L-C, Ma Y-Z. Functions of the ERF transcription factor family in plants. Botany 2008, 86(9):969-977.
61. Ohme-Takagi M, Shinshi H. Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell 1995, 7:173-182. 160773, 7756828.
62. Yang Z, Tian L, Latoszek-Green M, Brown D, Wu K. Arabidopsis ERF4 is a transcriptional repressor capable of modulating ethylene and abscisic acid responses. Plant Mol Biol 2005, 58(4):585-596. 10.1007/s11103-005-7294-5, 16021341.
63. Khandelwal A, Elvitigala T, Ghosh B, Quatrano RS. Arabidopsis transcriptome reveals control circuits regulating redox homeostasis and the role of an AP2 transcription factor. Plant Physiol 2008, 148(4):2050-2058. 10.1104/pp.108.128488, 2593674, 18829981.
64. Nole-Wilson S, Krizek BA. AINTEGUMENTA contributes to organ polarity and regulates growth of lateral organs in combination with YABBY genes. Plant Physiol 2006, 141(3):977-987. 10.1104/pp.106.076604, 1489906, 16714408.
65. Passarinho P, Ketelaar T. BABY BOOM target genes provide diverse entry points into cell proliferation and cell growth pathways. Plant Mol Biol 2008, 68:225-237. 10.1007/s11103-008-9364-y, 18663586.
66. Prasad K, Grigg SP, Barkoulas M, Yadav RK, Sanchez-Perez GF, Pinon V, Blilou I, Hofhuis H, Dhonukshe P, Galinha C, et al. Arabidopsis PLETHORA transcription factors control phyllotaxis. Curr Biol 2011, 21(13):1123-1128. 10.1016/j.cub.2011.05.009, 21700457.
67. Krizek BA. Auxin regulation of Arabidopsis flower development involves members of the AINTEGUMENTA-LIKE/PLETHORA (AIL/PLT) family. J Exp Bot 2011, 62(10):3311-3319. 10.1093/jxb/err127, 21511900.
68. Jofuku KD, Den Boer BG, Van Montagu M, Okamuro JK. Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. Plant Cell 1994, 6(9):1211-1225. 160514, 7919989.
69. Wurschum T, Gross-Hardt R, Laux T. APETALA2 regulates the stem cell niche in the Arabidopsis shoot meristem. Plant Cell 2006, 18(2):295-307. 10.1105/tpc.105.038398, 1356540, 16387832.
70. Woo HR, Kim JH, Kim J, Kim J, Lee U, Song I-J, Kim J-H, Lee H-Y, Nam HG, Lim PO. The RAV1 transcription factor positively regulates leaf senescence in Arabidopsis. J Exp Bot 2010, 61(14):3947-3957. 10.1093/jxb/erq206, 2935868, 20826506.
71. Michaux-Ferrière N, Carron MP. Histological structure of calli and induction of somatic embryos in Hevea brasiliensis according to subculture sequences. ompte Rendu du Colloque Exploitation, Physiologie et Amélioration de l'Hevea: 2-7 November 1988 1988 479-490. CARRON: IRCA.
72. Srinivasan C, Liu Z, Heidmann I, Supena ED, Fukuoka H, Joosen R, Lambalk J, Angenent G, Scorza R, Custers JB, et al. Heterologous expression of the BABY BOOM AP2/ERF transcription factor enhances the regeneration capacity of tobacco (Nicotiana tabacum L.). Planta 2007, 225(2):341-351.
73. Morcillo F, Gallard A, Pillot M, Jouannic S, Aberlenc-Bertossi F, Collin M, Verdeil JL, Tregear JW. EgAP2-1, an AINTEGUMENTA-like (AIL) gene expressed in meristematic and proliferating tissues of embryos in oil palm. Planta 2007, 226(6):1353-1362. 10.1007/s00425-007-0574-3, 17628826.
74. Blanc G, Michaux-Ferrière N, Teisson C, Lardet L, Carron MP. Effects of carbohydrate addition on the induction of somatic embryogenesis in Hevea brasiliensis. Plant Cell Tissue and Organ Culture 1999, 59:103-112.
75. El Hadrami I, Michaux-Ferrière N, Carron MP, D'Auzac J. Polyamines (PA.), a possible limiting factor in somatic embryogenesis of Hevea brasiliensis. CR Acad Sci Paris 1989, 308(Série III):205-211.
76. Nole-Wilson S, Tranby TL, Krizek BA. AINTEGUMENTA-like (AIL) genes are expressed in young tissues and may specify meristematic or division-competent states. Plant Mol Biol 2005, 57(5):613-628. 10.1007/s11103-005-0955-6, 15988559.
77. Mizukami Y, Fischer RL. Plant organ size control: AINTEGUMENTA regulates growth and cell numbers during organogenesis. Proc Natl Acad Sci USA 2000, 97(2):942-947. 10.1073/pnas.97.2.942, 15435, 10639184.
78. Alonso JM, Stepanova AN, Solano R, Wisman E, Ferrari S, Ausubel FM, Ecker JR. Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis. Proc Natl Acad Sci USA 2003, 100(5):2992-2997. 10.1073/pnas.0438070100, 151454, 12606727.
79. Hu YX, Wang YH, Liu XF, Li JY. Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development. Cell Res 2004, 14(1):8-15. 10.1038/sj.cr.7290197, 15040885.
80. Sohn KH, Lee SC, Jung HW, Hong JK, Hwang BK. Expression and functional roles of the pepper pathogen-induced transcription factor RAV1 in bacterial disease resistance, and drought and salt stress tolerance. Plant Mol Biol 2006, 61(6):897-915. 10.1007/s11103-006-0057-0, 16927203.
81. Michaux Ferrière N, Grout H, Carron MP. Origin and ontogenesis of somatic embryos in Hevea brasiliensis. Am J Bot 1992, 79(2):174-180.
82. Etienne H, Montoro P, Michaux-Ferrière N, Carron MP. Effects of desiccation, medium osmolarity and abscisic acid on the maturation of Hevea brasiliensis somatic embryos. J Exp Bot 1993, 44(267):1613-1619.
83. Wu H, Yu B, Cheng Q, Zeng R, Duan C, Nie Z, Li Y. Cloning and Characterization of Jasmonic Acid-Induced AP2/EREBP Genes in Laticifer from Rubber Tree (Hevea brasiliensis Muell. Arg.). Chinese Agricultural, Science Bulletin 2010, 2010(5):287-293.
84. Sambrook J, Fritsch EF, Maniatis T. Molecular cloning, a laboratory manual 1989, CHS Press.
85. Edgar RC. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004, 5:113. 10.1186/1471-2105-5-113, 517706, 15318951.
86. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004, 32(5):1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
87. Talavera G, Castresana J. Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 2007, 56(4):564-577. 10.1080/10635150701472164, 17654362.
88. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59(3):307-321. 10.1093/sysbio/syq010, 20525638.
89. Gascuel O. BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data. Mol Biol Evol 1997, 14(7):685-695. 10.1093/oxfordjournals.molbev.a025808, 9254330.
90. Dufayard JF, Duret L, Penel S, Gouy M, Rechenmann F, Perriere G. Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. Bioinformatics 2005, 21(11):2596-2603. 10.1093/bioinformatics/bti325, 15713731.
91. Anisimova M, Gil M, Dufayard JF, Dessimoz C, Gascuel O. Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes. Syst Biol 2011, 60(5):685-699. 10.1093/sysbio/syr041, 3158332, 21540409.