메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages 8124-

Automated analysis of cell-matrix adhesions in 2D and 3D environments

Author keywords

[No Author keywords available]

Indexed keywords

COLLAGEN TYPE 1; GREEN FLUORESCENT PROTEIN; PAXILLIN;

EID: 84923090509     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep08124     Document Type: Article
Times cited : (15)

References (43)
  • 1
    • 0037145037 scopus 로고    scopus 로고
    • Integrins: Bidirectional, allosteric signaling machines
    • Hynes, R. O. Integrins: bidirectional, allosteric signaling machines. Cell 110, 673-687 (2002).
    • (2002) Cell , vol.110 , pp. 673-687
    • Hynes, R.O.1
  • 2
    • 0029731588 scopus 로고    scopus 로고
    • Focal adhesions, contractility, and signaling
    • Burridge, K. & Chrzanowska-Wodnicka, M. Focal adhesions, contractility, and signaling. Annu Rev Cell Dev Biol 12, 463-518, doi:10.1146/annurev.cellbio.12.1.463 (1996).
    • (1996) Annu Rev Cell Dev Biol , vol.12 , pp. 463-518
    • Burridge, K.1    Chrzanowska-Wodnicka, M.2
  • 3
    • 78649483796 scopus 로고    scopus 로고
    • Nanoscale architecture of integrin-based cell adhesions
    • Kanchanawong, P. et al. Nanoscale architecture of integrin-based cell adhesions. Nature 468, 580-584, doi:10.1038/nature09621 (2010).
    • (2010) Nature , vol.468 , pp. 580-584
    • Kanchanawong, P.1
  • 4
    • 35848961683 scopus 로고    scopus 로고
    • Cell-matrix adhesion
    • Berrier, A. L. & Yamada, K. M. Cell-matrix adhesion. J Cell Physiol 213, 565-573, doi:10.1002/jcp.21237 (2007).
    • (2007) J Cell Physiol , vol.213 , pp. 565-573
    • Berrier, A.L.1    Yamada, K.M.2
  • 5
    • 0035516140 scopus 로고    scopus 로고
    • Transmembrane crosstalk between the extracellular matrix - Cytoskeleton crosstalk
    • Geiger, B., Bershadsky, A., Pankov, R.&Yamada, K. M. Transmembrane crosstalk between the extracellular matrix - cytoskeleton crosstalk. Nat Rev Mol Cell Biol 2, 793-805, doi:10.1038/35099066 (2001).
    • (2001) Nat Rev Mol Cell Biol , vol.2 , pp. 793-805
    • Geiger, B.1    Bershadsky, A.2    Pankov, R.3    Yamada, K.M.4
  • 6
    • 74949111794 scopus 로고    scopus 로고
    • Chapter 1. Focal adhesions: New angles on an old structure
    • Dubash, A. D. et al. Chapter 1. Focal adhesions: new angles on an old structure. Int Rev Cell Mol Biol 277, 1-65, doi:10.1016/S1937-6448(09)77001-7 (2009).
    • (2009) Int Rev Cell Mol Biol , vol.277 , pp. 1-65
    • Dubash, A.D.1
  • 7
    • 27644484968 scopus 로고    scopus 로고
    • Clinging to life: Cell to matrix adhesion and cell survival
    • Reddig, P. J. & Juliano, R. L. Clinging to life: cell to matrix adhesion and cell survival. Cancer Metastasis Rev 24, 425-439, doi:10.1007/s10555-005-5134-3 (2005).
    • (2005) Cancer Metastasis Rev , vol.24 , pp. 425-439
    • Reddig, P.J.1    Juliano, R.L.2
  • 8
    • 84875273788 scopus 로고    scopus 로고
    • Dynamic regulation of the structure and functions of integrin adhesions
    • Wolfenson, H., Lavelin, I. & Geiger, B. Dynamic regulation of the structure and functions of integrin adhesions. Dev Cell 24, 447-458, doi:10.1016/j.devcel.2013.02.012 (2013).
    • (2013) Dev Cell , vol.24 , pp. 447-458
    • Wolfenson, H.1    Lavelin, I.2    Geiger, B.3
  • 9
    • 1642586962 scopus 로고    scopus 로고
    • FAK-Src signalling through paxillin, ERK and MLCK regulates adhesion disassembly
    • Webb, D. J. et al. FAK-Src signalling through paxillin, ERK and MLCK regulates adhesion disassembly. Nat Cell Biol 6, 154-161, doi:10.1038/ncb1094 (2004).
    • (2004) Nat Cell Biol , vol.6 , pp. 154-161
    • Webb, D.J.1
  • 10
    • 84867872264 scopus 로고    scopus 로고
    • Assembly and disassembly of cell matrix adhesions
    • Wehrle-Haller, B. Assembly and disassembly of cell matrix adhesions. Curr Opin Cell Biol 24, 569-581, doi:10.1016/j.ceb.2012.06.010 (2012).
    • (2012) Curr Opin Cell Biol , vol.24 , pp. 569-581
    • Wehrle-Haller, B.1
  • 11
    • 84856831460 scopus 로고    scopus 로고
    • Adhesion dynamics at a glance
    • Vicente-Manzanares, M. & Horwitz, A. R. Adhesion dynamics at a glance. J Cell Sci 124, 3923-3927, doi:10.1242/jcs.095653 (2011).
    • (2011) J Cell Sci , vol.124 , pp. 3923-3927
    • Vicente-Manzanares, M.1    Horwitz, A.R.2
  • 12
    • 80053298724 scopus 로고    scopus 로고
    • Molecular architecture and function of matrix adhesions
    • Geiger, B. & Yamada, K. M. Molecular architecture and function of matrix adhesions. Cold Spring Harb Perspect Biol 3, doi:10.1101/cshperspect.a005033 (2011).
    • (2011) Cold Spring Harb Perspect Biol , vol.3
    • Geiger, B.1    Yamada, K.M.2
  • 13
    • 0028801218 scopus 로고
    • Integrin function: Molecular hierarchies of cytoskeletal and signaling molecules
    • Miyamoto, S. et al. Integrin function: molecular hierarchies of cytoskeletal and signaling molecules. J. Cell Biol. 131, 791-805 (1995).
    • (1995) J. Cell Biol. , vol.131 , pp. 791-805
    • Miyamoto, S.1
  • 14
    • 0344465841 scopus 로고    scopus 로고
    • Early molecular events in the assembly of matrix adhesions at the leading edge of migrating cells
    • Zaidel-Bar, R., Ballestrem, C., Kam, Z. & Geiger, B. Early molecular events in the assembly of matrix adhesions at the leading edge of migrating cells. J. Cell Sci. 116, 4605-4613 (2003).
    • (2003) J. Cell Sci. , vol.116 , pp. 4605-4613
    • Zaidel-Bar, R.1    Ballestrem, C.2    Kam, Z.3    Geiger, B.4
  • 15
    • 0024150623 scopus 로고
    • Focal adhesions: Transmembrane junctions between the extracellular matrix and the cytoskeleton
    • Burridge, K., Fath, K., Kelly, T., Nuckolls, G. & Turner, C. Focal adhesions: transmembrane junctions between the extracellular matrix and the cytoskeleton. Annu Rev Cell Biol 4, 487-525, doi:10.1146/annurev.cb.04.110188.002415 (1988).
    • (1988) Annu Rev Cell Biol , vol.4 , pp. 487-525
    • Burridge, K.1    Fath, K.2    Kelly, T.3    Nuckolls, G.4    Turner, C.5
  • 16
    • 84857690534 scopus 로고    scopus 로고
    • The structure of cell-matrix adhesions: The new frontier
    • Hanein, D. & Horwitz, A. R. The structure of cell-matrix adhesions: the new frontier. Curr Opin Cell Biol 24, 134-140, doi:10.1016/j.ceb.2011.12.001 (2012).
    • (2012) Curr Opin Cell Biol , vol.24 , pp. 134-140
    • Hanein, D.1    Horwitz, A.R.2
  • 17
    • 0035941075 scopus 로고    scopus 로고
    • Taking cell-matrix adhesions to the third dimension
    • Cukierman, E., Pankov, R., Stevens, D. R. & Yamada, K. M. Taking cell-matrix adhesions to the third dimension. Science 294, 1708-1712, doi:10.1126/ science.1064829 (2001).
    • (2001) Science , vol.294 , pp. 1708-1712
    • Cukierman, E.1    Pankov, R.2    Stevens, D.R.3    Yamada, K.M.4
  • 18
    • 0041302108 scopus 로고    scopus 로고
    • Direct, dynamic assessment of cell-matrix interactions inside fibrillar collagen lattices
    • Petroll, W. M. & Ma, L. Direct, dynamic assessment of cell-matrix interactions inside fibrillar collagen lattices. Cell Motil Cytoskeleton 55, 254-264, doi:10.1002/cm.10126 (2003).
    • (2003) Cell Motil Cytoskeleton , vol.55 , pp. 254-264
    • Petroll, W.M.1    Ma, L.2
  • 19
    • 79551657030 scopus 로고    scopus 로고
    • Distinct roles for paxillin and Hic-5 in regulating breast cancer cell morphology, invasion, and metastasis
    • Deakin, N. O. & Turner, C. E. Distinct roles for paxillin and Hic-5 in regulating breast cancer cell morphology, invasion, and metastasis. Mol Biol Cell 22, 327-341, doi:10.1091/mbc.E10-09-0790 (2011).
    • (2011) Mol Biol Cell , vol.22 , pp. 327-341
    • Deakin, N.O.1    Turner, C.E.2
  • 20
    • 78650457713 scopus 로고    scopus 로고
    • Reducing background fluorescence reveals adhesions in 3D matrices
    • Kubow, K. E. & Horwitz, A. R. Reducing background fluorescence reveals adhesions in 3D matrices. Nat Cell Biol 13, 3-5, doi:10.1038/ncb0111-3 (2011).
    • (2011) Nat Cell Biol , vol.13 , pp. 3-5
    • Kubow, K.E.1    Horwitz, A.R.2
  • 21
    • 80053925801 scopus 로고    scopus 로고
    • Cell-matrix adhesions in 3D
    • Harunaga, J. S. & Yamada, K. M. Cell-matrix adhesions in 3D. Matrix Biol 30, 363-368, doi:10.1016/j.matbio.2011.06.001 (2011).
    • (2011) Matrix Biol , vol.30 , pp. 363-368
    • Harunaga, J.S.1    Yamada, K.M.2
  • 22
    • 84867395330 scopus 로고    scopus 로고
    • Do cancer cells have distinct adhesions in 3D collagen matrices and in vivo?
    • Geraldo, S. et al. Do cancer cells have distinct adhesions in 3D collagen matrices and in vivo? Eur J Cell Biol 91, 930-937, doi:10.1016/j.ejcb.2012.07.005 (2012).
    • (2012) Eur J Cell Biol , vol.91 , pp. 930-937
    • Geraldo, S.1
  • 23
    • 0036774181 scopus 로고    scopus 로고
    • Cell interactions with threedimensional matrices
    • Cukierman, E., Pankov, R. & Yamada, K. M. Cell interactions with threedimensional matrices. Curr Opin Cell Biol 14, 633-639 (2002).
    • (2002) Curr Opin Cell Biol , vol.14 , pp. 633-639
    • Cukierman, E.1    Pankov, R.2    Yamada, K.M.3
  • 24
    • 0037264813 scopus 로고    scopus 로고
    • Genomic analysis of smooth muscle cells in 3-dimensional collagen matrix
    • Li, S. et al. Genomic analysis of smooth muscle cells in 3-dimensional collagen matrix. FASEB J 17, 97-99, doi:10.1096/fj.02-0256fje (2003).
    • (2003) FASEB J , vol.17 , pp. 97-99
    • Li, S.1
  • 25
    • 79952129858 scopus 로고    scopus 로고
    • Direct comparisons of the morphology, migration, cell adhesions, and actin cytoskeleton of fibroblasts in four different three-dimensional extracellular matrices
    • Hakkinen, K. M., Harunaga, J. S., Doyle, A. D. & Yamada, K. M. Direct comparisons of the morphology, migration, cell adhesions, and actin cytoskeleton of fibroblasts in four different three-dimensional extracellular matrices. Tissue Eng Part A 17, 713-724, doi:10.1089/ten.TEA.2010.0273 (2011).
    • (2011) Tissue Eng Part A , vol.17 , pp. 713-724
    • Hakkinen, K.M.1    Harunaga, J.S.2    Doyle, A.D.3    Yamada, K.M.4
  • 26
    • 0036855955 scopus 로고    scopus 로고
    • Modulation of fibroblast morphology and adhesion during collagen matrix remodeling
    • Tamariz, E. & Grinnell, F. Modulation of fibroblast morphology and adhesion during collagen matrix remodeling. Mol Biol Cell 13, 3915-3929, doi:10.1091/mbc.E02-05-0291 (2002).
    • (2002) Mol Biol Cell , vol.13 , pp. 3915-3929
    • Tamariz, E.1    Grinnell, F.2
  • 27
    • 84862884951 scopus 로고    scopus 로고
    • Micro-environmental control of cell migration - Myosin IIA is required for efficient migration in fibrillar environments through control of cell adhesion dynamics
    • Doyle, A. D. et al . Micro-environmental control of cell migration - myosin IIA is required for efficient migration in fibrillar environments through control of cell adhesion dynamics. J Cell Sci 125, 2244-2256, doi:10.1242/jcs.098806 (2012).
    • (2012) J Cell Sci , vol.125 , pp. 2244-2256
    • Doyle, A.D.1
  • 28
    • 84883756003 scopus 로고    scopus 로고
    • Matrix microarchitecture and myosin II determine adhesion in 3D matrices
    • Kubow, K. E., Conrad, S. K. & Horwitz, A. R. Matrix microarchitecture and myosin II determine adhesion in 3D matrices. Curr Biol 23, 1607-1619, doi:10.1016/j.cub.2013.06.053 (2013).
    • (2013) Curr Biol , vol.23 , pp. 1607-1619
    • Kubow, K.E.1    Conrad, S.K.2    Horwitz, A.R.3
  • 29
    • 61449181308 scopus 로고    scopus 로고
    • One-dimensional topography underlies three-dimensional fibrillar cell migration
    • Doyle, A. D., Wang, F. W., Matsumoto, K. & Yamada, K. M. One-dimensional topography underlies three-dimensional fibrillar cell migration. J Cell Biol 184, 481-490, doi:10.1083/jcb.200810041 (2009).
    • (2009) J Cell Biol , vol.184 , pp. 481-490
    • Doyle, A.D.1    Wang, F.W.2    Matsumoto, K.3    Yamada, K.M.4
  • 30
    • 84855166470 scopus 로고    scopus 로고
    • CellAnimation: An open source MATLAB framework for microscopy assays
    • Georgescu, W., Wikswo, J. P. & Quaranta, V. CellAnimation: an open source MATLAB framework for microscopy assays. Bioinformatics 28, 138-139, doi:10.1093/bioinformatics/btr633 (2012).
    • (2012) Bioinformatics , vol.28 , pp. 138-139
    • Georgescu, W.1    Wikswo, J.P.2    Quaranta, V.3
  • 31
    • 70349528156 scopus 로고    scopus 로고
    • Quantitative statistical description of integrin clusters in adherent cells
    • Welf, E. S., Ogunnaike, B. A. & Naik, U. P. Quantitative statistical description of integrin clusters in adherent cells. IET Syst Biol 3, 307-316, doi:10.1049/ietsyb.2009.0009 (2009).
    • (2009) IET Syst Biol , vol.3 , pp. 307-316
    • Welf, E.S.1    Ogunnaike, B.A.2    Naik, U.P.3
  • 32
    • 84862207015 scopus 로고    scopus 로고
    • Probabilistic modeling and analysis of the effects of extra-cellular matrix density on the sizes, shapes, and locations of integrin clusters in adherent cells
    • Welf, E. S., Naik, U. P. & Ogunnaike, B. A. Probabilistic modeling and analysis of the effects of extra-cellular matrix density on the sizes, shapes, and locations of integrin clusters in adherent cells. BMC Biophys 4, 15, doi:10.1186/2046-1682-4- 15 (2011).
    • (2011) BMC Biophys , vol.4 , pp. 15
    • Welf, E.S.1    Naik, U.P.2    Ogunnaike, B.A.3
  • 33
    • 80054043122 scopus 로고    scopus 로고
    • Exploring the formation of focal adhesions on patterned surfaces using super-resolution imaging
    • Chien, F. C., Kuo, C. W., Yang, Z. H., Chueh, D. Y. & Chen, P. Exploring the formation of focal adhesions on patterned surfaces using super-resolution imaging. Small 7, 2906-2913, doi:10.1002/smll.201100753 (2011).
    • (2011) Small , vol.7 , pp. 2906-2913
    • Chien, F.C.1    Kuo, C.W.2    Yang, Z.H.3    Chueh, D.Y.4    Chen, P.5
  • 34
    • 0017143820 scopus 로고
    • Cell-to-substrate contacts in living fibroblasts: An interference reflexion study with an evaluation of the technique
    • Izzard, C. S. & Lochner, L. R. Cell-to-substrate contacts in living fibroblasts: an interference reflexion study with an evaluation of the technique. J Cell Sci 21, 129-159 (1976).
    • (1976) J Cell Sci , vol.21 , pp. 129-159
    • Izzard, C.S.1    Lochner, L.R.2
  • 35
    • 0017904573 scopus 로고
    • Cell to substratum contacts of chick fibroblasts and their relation to themicrofilament system.Acorrelated interference-reflexion and high-voltage electron-microscope study
    • Heath, J. P. & Dunn, G. A. Cell to substratum contacts of chick fibroblasts and their relation to themicrofilament system.Acorrelated interference-reflexion and high-voltage electron-microscope study. J Cell Sci 29, 197-212 (1978).
    • (1978) J Cell Sci , vol.29 , pp. 197-212
    • Heath, J.P.1    Dunn, G.A.2
  • 36
    • 84870243242 scopus 로고    scopus 로고
    • The origins of themolecular era of adhesion research
    • Horwitz, A. R. The origins of themolecular era of adhesion research. Nat Rev Mol Cell Biol 13, 805-811, doi:10.1038/nrm3473 (2012).
    • (2012) Nat Rev Mol Cell Biol , vol.13 , pp. 805-811
    • Horwitz, A.R.1
  • 37
    • 0034713224 scopus 로고    scopus 로고
    • Transforming growth factorbeta1 promotes the morphological and functional differentiation of the myofibroblast
    • Vaughan, M. B., Howard, E. W. & Tomasek, J. J. Transforming growth factorbeta1 promotes the morphological and functional differentiation of the myofibroblast. Exp Cell Res 257, 180-189, doi:10.1006/excr.2000.4869 (2000).
    • (2000) Exp Cell Res , vol.257 , pp. 180-189
    • Vaughan, M.B.1    Howard, E.W.2    Tomasek, J.J.3
  • 38
    • 0037455576 scopus 로고    scopus 로고
    • Compensation mechanism in tumor cell migration: Mesenchymalamoeboid transition after blocking of pericellular proteolysis
    • Wolf, K. et al. Compensation mechanism in tumor cell migration: mesenchymalamoeboid transition after blocking of pericellular proteolysis. J Cell Biol 160, 267-277, doi:10.1083/jcb.200209006 (2003).
    • (2003) J Cell Biol , vol.160 , pp. 267-277
    • Wolf, K.1
  • 39
    • 79960334368 scopus 로고    scopus 로고
    • High-resolution quantification of focal adhesion spatiotemporal dynamics in living cells
    • Berginski, M. E., Vitriol, E. A., Hahn, K. M. & Gomez, S. M. High-resolution quantification of focal adhesion spatiotemporal dynamics in living cells. PLoS One 6, e22025, doi:10.1371/journal.pone.0022025 (2011).
    • (2011) PLoS One , vol.6
    • Berginski, M.E.1    Vitriol, E.A.2    Hahn, K.M.3    Gomez, S.M.4
  • 40
    • 78650151435 scopus 로고    scopus 로고
    • Automated segmentation and tracking for large-scale analysis of focal adhesion dynamics
    • Wurflinger, T., Gamper, I., Aach, T. & Sechi, A. S. Automated segmentation and tracking for large-scale analysis of focal adhesion dynamics. JMicrosc 241, 37-53, doi:10.1111/j.1365-2818.2010.03404.x (2011).
    • (2011) JMicrosc , vol.241 , pp. 37-53
    • Wurflinger, T.1    Gamper, I.2    Aach, T.3    Sechi, A.S.4
  • 41
    • 84890523471 scopus 로고    scopus 로고
    • Activation of Rac by Asef2 promotes myosin II-dependent contractility to inhibit cell migration on type I collagen
    • Jean, L. et al. Activation of Rac by Asef2 promotes myosin II-dependent contractility to inhibit cell migration on type I collagen. J Cell Sci 126, 5585-5597, doi:10.1242/jcs.131060 (2013).
    • (2013) J Cell Sci , vol.126 , pp. 5585-5597
    • Jean, L.1
  • 42
    • 84859707600 scopus 로고    scopus 로고
    • The endosomal adaptor protein APPL1 impairs the turnover of leading edge adhesions to regulate cell migration
    • Broussard, J. A. et al. The endosomal adaptor protein APPL1 impairs the turnover of leading edge adhesions to regulate cell migration. Mol Biol Cell 23, 1486-1499, doi:10.1091/mbc.E11-02-0124 (2012).
    • (2012) Mol Biol Cell , vol.23 , pp. 1486-1499
    • Broussard, J.A.1
  • 43
    • 33646776346 scopus 로고    scopus 로고
    • Paxillin phosphorylation at Ser273 localizes a GIT1-PIX-PAK complex and regulates adhesion and protrusion dynamics
    • Nayal, A. et al. Paxillin phosphorylation at Ser273 localizes a GIT1-PIX-PAK complex and regulates adhesion and protrusion dynamics. J Cell Biol 173, 587-589, doi:10.1083/jcb.200509075 (2006).
    • (2006) J Cell Biol , vol.173 , pp. 587-589
    • Nayal, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.