-
1
-
-
0042166174
-
Chromosome aberrations in solid tumors
-
Albertson, D. G. et al. (2003) Chromosome aberrations in solid tumors. Nat. Genet., 34, 369-376.
-
(2003)
Nat. Genet.
, vol.34
, pp. 369-376
-
-
Albertson, D.G.1
-
2
-
-
84891370404
-
Expands: Expanding ploidy and allele frequency on nested subpopulations
-
Andor, N. et al. (2014) Expands: expanding ploidy and allele frequency on nested subpopulations. Bioinformatics, 30, 50-60.
-
(2014)
Bioinformatics
, vol.30
, pp. 50-60
-
-
Andor, N.1
-
3
-
-
84861548193
-
Summarizing and correcting the GC content bias in high-throughput sequencing
-
Benjamini, Y. and Speed, T. P. (2012) Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Res., 40, e72.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. e72
-
-
Benjamini, Y.1
Speed, T.P.2
-
4
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
Cancer Genome Atlas Network. (2012) Comprehensive molecular portraits of human breast tumours. Nature, 490, 61-70.
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
Cancer Genome Atlas Network1
-
5
-
-
84878372012
-
Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia
-
Cancer Genome Atlas Research Network. (2013) Genomic and epigenomic landscapes of adult de novo acute myeloid leukemia. N. Engl. J. Med., 368, 2059-2074.
-
(2013)
N. Engl. J. Med.
, vol.368
, pp. 2059-2074
-
-
Cancer Genome Atlas Research Network1
-
6
-
-
84860782006
-
Absolute quantification of somatic DNA alterations in human cancer
-
Carter, S. L. et al. (2012) Absolute quantification of somatic DNA alterations in human cancer. Nat. Biotechnol., 30, 413-421.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 413-421
-
-
Carter, S.L.1
-
7
-
-
78650791604
-
Analysis of next-generation genomic data in cancer: Accomplishments and challenges
-
Ding, L. et al. (2010) Analysis of next-generation genomic data in cancer: accomplishments and challenges. Hum. Mol. Genet., 19, R188-R196.
-
(2010)
Hum. Mol. Genet.
, vol.19
, pp. R188-R196
-
-
Ding, L.1
-
8
-
-
84863393080
-
Intratumor heterogeneity and branched evolution revealed by multiregion sequencing
-
Gerlinger, M. et al. (2012) Intratumor heterogeneity and branched evolution revealed by multiregion sequencing. N. Engl. J. Med., 366, 883-892.
-
(2012)
N. Engl. J. Med.
, vol.366
, pp. 883-892
-
-
Gerlinger, M.1
-
9
-
-
84856013431
-
Clonal evolution in cancer
-
Greaves, M. and Maley, C. C. (2012) Clonal evolution in cancer. Nature, 481, 306-313.
-
(2012)
Nature
, vol.481
, pp. 306-313
-
-
Greaves, M.1
Maley, C.C.2
-
10
-
-
84855185866
-
Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data
-
Gusnanto, A. et al. (2012) Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data. Bioinformatics, 28, 40-47.
-
(2012)
Bioinformatics
, vol.28
, pp. 40-47
-
-
Gusnanto, A.1
-
11
-
-
84902455399
-
A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data
-
Hajirasouliha, I. et al. (2014) A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data. Bioinformatics, 30, i78-i86.
-
(2014)
Bioinformatics
, vol.30
, pp. i78-i86
-
-
Hajirasouliha, I.1
-
12
-
-
84893164721
-
Inferring clonal evolution of tumors from single nucleotide somatic mutations
-
Jiao, W. et al. (2014) Inferring clonal evolution of tumors from single nucleotide somatic mutations. BMC Bioinformatics, 15, 35.
-
(2014)
BMC Bioinformatics
, vol.15
, pp. 35
-
-
Jiao, W.1
-
13
-
-
84880560760
-
Purbayes: Estimating tumor cellularity and subclonality in next-generation sequencing data
-
Larson, N. B. and Fridley, B. L. (2013) Purbayes: estimating tumor cellularity and subclonality in next-generation sequencing data. Bioinformatics, 29, 1888-1889.
-
(2013)
Bioinformatics
, vol.29
, pp. 1888-1889
-
-
Larson, N.B.1
Fridley, B.L.2
-
14
-
-
84886541754
-
Excavator: Detecting copy number variants from whole-exome sequencing data
-
Magi, A. et al. (2013) Excavator: detecting copy number variants from whole-exome sequencing data. Genome Biol., 14, R120.
-
(2013)
Genome Biol.
, vol.14
, pp. R120
-
-
Magi, A.1
-
15
-
-
77956838065
-
Advances in understanding cancer genomes through second-generation sequencing
-
Meyerson, M. et al. (2010) Advances in understanding cancer genomes through second-generation sequencing. Nat. Rev. Genet., 11, 685-696.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 685-696
-
-
Meyerson, M.1
-
16
-
-
57149118627
-
Genomic analysis of the clonal origins of relapsed acute lymphoblastic leukemia
-
Mullighan, C. G. et al. (2008) Genomic analysis of the clonal origins of relapsed acute lymphoblastic leukemia. Science, 322, 1377-1380.
-
(2008)
Science
, vol.322
, pp. 1377-1380
-
-
Mullighan, C.G.1
-
17
-
-
84861550476
-
The life history of 21 breast cancers
-
Nik-Zainal, S. et al. (2012) The life history of 21 breast cancers. Cell, 149, 994-1007.
-
(2012)
Cell
, vol.149
, pp. 994-1007
-
-
Nik-Zainal, S.1
-
18
-
-
84880934918
-
THetA: Inferring intra-tumor heterogeneity from highthroughput DNA sequencing data
-
Oesper, L. et al. (2013) THetA: inferring intra-tumor heterogeneity from highthroughput DNA sequencing data. Genome Biol., 14, R80.
-
(2013)
Genome Biol.
, vol.14
, pp. R80
-
-
Oesper, L.1
-
19
-
-
84897954204
-
Pyclone: Statistical inference of clonal population structure in cancer
-
Roth, A. et al. (2014) Pyclone: statistical inference of clonal population structure in cancer. Nat. Methods, 11, 396-398.
-
(2014)
Nat. Methods
, vol.11
, pp. 396-398
-
-
Roth, A.1
-
20
-
-
80053446554
-
Exome sequencing-based copy-number variation and loss of heterozygosity detection: Exomecnv
-
Sathirapongsasuti, J. F. et al. (2011) Exome sequencing-based copy-number variation and loss of heterozygosity detection: exomecnv. Bioinformatics, 27, 2648-2654.
-
(2011)
Bioinformatics
, vol.27
, pp. 2648-2654
-
-
Sathirapongsasuti, J.F.1
-
21
-
-
84894573670
-
Paediatric and adult glioblastoma: Multiform (epi) genomic culprits emerge
-
Sturm, D. et al. (2014) Paediatric and adult glioblastoma: multiform (epi) genomic culprits emerge. Nat. Rev. Cancer, 14, 92-107.
-
(2014)
Nat. Rev. Cancer
, vol.14
, pp. 92-107
-
-
Sturm, D.1
-
22
-
-
81755172942
-
Copy number variation detection in whole-genome sequencing data using the bayesian information criterion
-
Xi, R. et al. (2011) Copy number variation detection in whole-genome sequencing data using the bayesian information criterion. Proc. Natl Acad. Sci. USA, 108, E1128-E1136.
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. E1128-E1136
-
-
Xi, R.1
-
23
-
-
84902579580
-
An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples
-
in press., February, 2014, Epub ahead of print
-
Yadav, V. K. and De, S. (2014) An assessment of computational methods for estimating purity and clonality using genomic data derived from heterogeneous tumor tissue samples. In: Brief. Bioinform, in press. [Epub ahead of print, doi:10.1093/bib/bbu002, February 20, 2014].
-
(2014)
Brief. Bioinform
, vol.20
-
-
Yadav, V.K.1
De, S.2
|