The contrasting responses of soil microorganisms in two rice cultivars to elevated ground-level ozone

Environmental Pollution

Volumn 197, Issue , 2015, Pages 195-202

  Feng, Youzhi ^a   Yu, Yongjie ^a   Tang, Haoye ^a   Zu, Qianhui ^a,b   Zhu, Jianguo ^a   Lin, Xiangui ^a  

^a INSTITUTE OF SOIL SCIENCE   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Bacterial community; Elevated ground level O3; Pyrosequencing; Rice cultivar

Indexed keywords

CROPS; POLLUTION; SOILS;

AIR CONCENTRATIONS; BACTERIAL COMMUNITY; GROUND LEVEL; GROUND-LEVEL OZONE; PHYLOGENETIC DIVERSITY; PYROSEQUENCING; RICE CULTIVARS; SOIL MICRO-ORGANISMS;

BACTERIA;

CARBON; OZONE; AIR POLLUTANT; SOIL;

CULTIVAR; GROWTH RESPONSE; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; OZONE; RICE; SOIL BIOTA; SOIL MICROORGANISM; SOIL QUALITY;

ACIDOBACTERIA; ACTINOBACTERIA; AGROECOSYSTEM; AMPLICON; ARTICLE; BACTEROIDETES; CHLOROBI; CHLOROFLEXI; CONTROLLED STUDY; CROP; CULTIVAR; DNA EXTRACTION; FIRMICUTES; GROWTH CURVE; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MOLECULAR LIBRARY; MOLECULAR PHYLOGENY; NITROSPIRAE; NONHUMAN; PLANCTOMYCETES; PLANT GROWTH; POLLUTION MONITORING; PROTEOBACTERIA; PYROSEQUENCING; RICE; SOIL MICROFLORA; SOIL POLLUTION; AIR POLLUTANT; CHEMISTRY; CLASSIFICATION; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; PHYLOGENY; PHYSIOLOGY; SOIL; TOXICITY;

BACTERIA (MICROORGANISMS);

AIR POLLUTANTS; ORYZA SATIVA; OZONE; PHYLOGENY; SOIL; SOIL MICROBIOLOGY;

EID: 84922717914     PISSN: 02697491     EISSN: 18736424     Source Type: Journal    
DOI: 10.1016/j.envpol.2014.11.032     Document Type: Article

References (52)

1. J.H. Ahn, J. Song, B.Y. Kim, M.S. Kim, J.H. Joa, and H.Y. Weon Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices J. Microbiol. 50 2012 754 765
2. E.A. Ainsworth, C.R. Yendrek, S. Sitch, W.J. Collins, and L.D. Emberson The effects of tropospheric ozone on net primary productivity and implications for climate change Annu. Rev. Plant Biol. 63 2012 637 661
3. N. Akhtar, M. Yamaguchi, H. Inada, D. Hoshino, T. Kondo, M. Fukami, R. Funada, and T. Izuta Effects of ozone on growth, yield and leaf gas exchange rates of four Bangladeshi cultivars of rice (Oryza sativa L.) Environ. Pollut. 158 2010 2970 2976
4. C.P. Andersen Source-sink balance and carbon allocation below ground in plants exposed to ozone New Phytol. 157 2003 213 228
5. R.D. Bardgett, and K.F. Chan Experimental evidence that soil fauna enhance nutrient mineralization and plant nutrient uptake in montane grassland ecosystems Soil Biol. Biochem. 31 1999 1007 1014
6. 3 Glob. Change Biol. 11 2005 685 698
7. S. Burkart, J. Bender, B. Tarkotta, S. Faust, A. Castagna, A. Ranieri, and H.J. Weigel Effects of ozone on leaf senescence, photochemical efficiency and grain yield in two winter wheat cultivars J. Agron. Crop Sci. 199 2013 275 285
8. J.G. Caporaso, J. Kuczynski, J. Stombaugh, K. Bittinger, F.D. Bushman, E.K. Costello, N. Fierer, A.G. Pena, J.K. Goodrich, J.I. Gordon, G.A. Huttley, S.T. Kelley, D. Knights, J.E. Koenig, R.E. Ley, C.A. Lozupone, D. McDonald, B.D. Muegge, M. Pirrung, J. Reeder, J.R. Sevinsky, P.J. Tumbaugh, W.A. Walters, J. Widmann, T. Yatsunenko, J. Zaneveld, and R. Knight QIIME allows analysis of high-throughput community sequencing data Nat. Methods 7 2010 335 336
9. F.F. Caregnato, R.C. Bortolin, A.M. Divan, and J.C.F. Moreira Exposure to elevated ozone levels differentially affects the antioxidant capacity and the redox homeostasis of two subtropical Phaseolus vulgaris L. varieties Chemosphere 93 2013 320 330
10. 3 on soil microbial community function under wheat crop Water Air Soil Pollut. 198 2009 189 198
11. K.R. Clarke, and R.M. Warwick A further biodiversity index applicable to species lists: variation in taxonomic distinctness Mar. Ecol. Prog. Ser. 216 2001 265 278
12. H. Daims, J.L. Nielsen, P.H. Nielsen, K.H. Schleifer, and M. Wagner In situ characterization of Nitrospira-like nitrite oxidizing bacteria active in wastewater treatment plants Appl. Environ. Microbiol. 67 2001 5273 5284
13. F. Dentener, D. Stevenson, K. Ellingsen, T. van Noije, M. Schultz, M. Amann, C. Atherton, N. Bell, D. Bergmann, I. Bey, L. Bouwman, T. Butler, J. Cofala, B. Collins, J. Drevet, R. Doherty, B. Eickhout, H. Eskes, A. Fiore, M. Gauss, D. Hauglustaine, L. Horowitz, I.S.A. Isaksen, B. Josse, M. Lawrence, M. Krol, J.F. Lamarque, V. Montanaro, J.F. Muller, V.H. Peuch, G. Pitari, J. Pyle, S. Rast, J. Rodriguez, M. Sanderson, N.H. Savage, D. Shindell, S. Strahan, S. Szopa, K. Sudo, R. Van Dingenen, O. Wild, and G. Zeng The global atmospheric environment for the next generation Environ. Sci. Technol. 40 2006 3586 3594
14. D.P. Faith Conservation evaluation and phylogenetic diversity Biol. Conserv. 61 1992 1 10
15. H.H.P. Fang, D.W. Liang, T. Zhang, and Y. Liu Anaerobic treatment of phenol in wastewater under thermophilic condition Water Res. 40 2006 427 434
16. Y.Z. Feng, X.C. Cui, S.Y. He, G. Dong, M. Chen, J.H. Wang, and X.G. Lin The role of metal nanoparticles in influencing arbuscular mycorrhizal fungi effects on plant growth Environ. Sci. Technol. 47 2013 9496 9504
17. 3 negatively influences paddy methanogenic archaeal community Sci. Rep. 3 2013
18. 3 changes the diversity of anoxygenic purple phototrophic bacteria in paddy field Microb. Ecol. 62 2011 789 799
19. Z.Z. Feng, and K. Kobayashi Assessing the impacts of current and future concentrations of surface ozone on crop yield with meta-analysis Atmos. Environ. 43 2009 1510 1519
20. Z.Z. Feng, J. Pang, K. Kobayashi, J.G. Zhu, and D.R. Ort Differential responses in two varieties of winter wheat to elevated ozone concentration under fully open-air field conditions Glob. Change Biol. 17 2011 580 591
21. E. Hackl, S. Zechmeister-Boltenstern, L. Bodrossy, and A. Sessitsch Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils Appl. Environ. Microbiol. 70 2004 5057 5065
22. L.V. Hedges, J. Gurevitch, and P.S. Curtis The meta-analysis of response ratios in experimental ecology Ecology 80 1999 1150 1156
23. T.G. Jones, C. Freeman, A. Lloyd, and G. Mills Impacts of elevated atmospheric ozone on peatland below-ground DOC characteristics Ecol. Eng. 35 2009 971 977
24. S. Kalyuzhnyi, M. Gladchenko, A. Mulder, and B. Versprille New anaerobic process of nitrogen removal Water Sci. Technol. 54 2006 163 170
25. Q. Li, X.L. Bao, C.Y. Lu, X.K. Zhang, J.G. Zhu, Y. Jiang, and W.J. Liang Soil microbial food web responses to free-air ozone enrichment can depend on the ozone-tolerance of wheat cultivars Soil Biol. Biochem. 47 2012 27 35
26. X. Li, Y. Deng, C. Lu, J. Wang, H. Zhang, J. Zhu, J. Zhou, and Z. He Shifts of functional gene representation in wheat rhizosphere microbial communities under elevated ozone ISME J. 7 2013 660 671
27. Y.Y. Li, L.Q. Chen, H.Y. Wen, T.Y. Zhou, T. Zhang, and X.L. Gao 454 pyrosequencing analysis of bacterial diversity revealed by a comparative study of soils from mining subsidence and reclamation areas J. Microbiol. Biotechnol. 24 2014 313 323
28. A.R. Lopes, C.M. Manaia, and O.C. Nunes Bacterial community variations in an alfalfa- rice rotation system revealed by 16S rRNA gene 454-pyrosequencing FEMS Microbiol. Ecol. 87 2014 650 663
29. C. Lozupone, and R. Knight UniFrac: a new phylogenetic method for comparing microbial communities Appl. Environ. Microbiol. 71 2005 8228 8235
30. 2 stimulates net accumulations of carbon and nitrogen in land ecosystems: a meta-analysis Ecology 87 2006 53 63
31. J.K. McCrady, and C.P. Andersen The effect of ozone on below-ground carbon allocation in wheat Environ. Pollut. 107 2000 465 472
32. A.K. Mishra, R. Rai, and S.B. Agrawal Differential response of dwarf and tall tropical wheat cultivars to elevated ozone with and without carbon dioxide enrichment: growth, yield and grain quality Field Crops Res. 145 2013 21 32
33. J. Pang, K. Kobayashi, and J.G. Zhu Yield and photosynthetic characteristics of flag leaves in Chinese rice (Oryza sativa L.) varieties subjected to free-air release of ozone Agric. Ecosyst. Environ. 132 2009 203 211
34. M.N. Price, P.S. Dehal, and A.P. Arkin FastTree: computing large minimum evolution trees with profiles instead of a distance matrix Mol. Biol. Evol. 26 2009 1641 1650
35. P.A. Roger Biology and Management of the Floodwater Ecosystem in Ricefields 1996 International Rice Research Institute Los Baños,Philippines
36. H. Schmidt, and T. Eickhorst Spatio-temporal variability of microbial abundance and community structure in the puddled layer of a paddy soil cultivated with wetland rice (Oryza sativa L.) Appl. Soil Ecol. 72 2013 93 102
37. A.K. Shaw, A.L. Halpern, K. Beeson, B. Tran, J.C. Venter, and J.B.H. Martiny It's all relative: ranking the diversity of aquatic bacterial communities Environ. Microbiol. 10 2008 2200 2210
38. G.Y. Shi, L.X. Yang, Y.X. Wang, K. Kobayashi, J.G. Zhu, H.Y. Tang, S.T. Pan, T. Chen, G. Liu, and Y.L. Wang Impact of elevated ozone concentration on yield of four Chinese rice cultivars under fully open-air field conditions Agric. Ecosyst. Environ. 131 2009 178 184
39. M. Strous, J.A. Fuerst, E.H.M. Kramer, S. Logemann, G. Muyzer, K.T. van de Pas-Schoonen, R. Webb, J.G. Kuenen, and M.S.M. Jetten Missing lithotroph identified as new planctomycete Nature 400 1999 446 449
40. H.Y. Tang, G. Liu, Y. Han, J.G. Zhu, and K. Kobayashi A system for free-air ozone concentration elevation with rice and wheat: control performance and ozone exposure regime Atmos. Environ. 45 2011 6276 6282
41. S. Toet, P. Ineson, S. Peacock, and M. Ashmore Elevated ozone reduces methane emissions from peatland mesocosms Glob. Change Biol. 17 2011 288 296
42. N.C. Turner, P.E. Waggoner, and S. Rich Removal of ozone from atmosphere by soil and vegetation Nature 250 1974 486 489
43. R. Vingarzan A review of surface ozone background levels and trends Atmos. Environ. 38 2004 3431 3442
44. J.H. Wu, W.T. Liu, I.C. Tseng, and S.S. Cheng Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system Microbiology-Uk 147 2001 373 382
45. M.N. Wu, H.L. Qin, Z. Chen, J.S. Wu, and W.X. Wei Effect of long-term fertilization on bacterial composition in rice paddy soil Biol. Fertil. Soils 47 2011 397 405
46. 2 enrichment on dark respiration of rice plants (Oryza sativa L.) Agric. Ecosyst. Environ. 115 2006 105 112
47. T. Yamada, and Y. Sekiguchi Cultivation of uncultured chloroflexi subphyla: significance and ecophysiology of formerly uncultured chloroflexi 'subphylum i' with natural and biotechnological relevance Microbes Environ. 24 2009 205 216
48. T. Yamada, Y. Sekiguchi, S. Hanada, H. Imachi, A. Ohashi, H. Harada, and Y. Kamagata Anaerolinea thermolimosa sp nov., Levilinea saccharolytica gen. nov., sp nov and Leptolinea tardivitalis gen. nov., so. nov., novel filamentous anaerobes, and description of the new classes anaerolineae classis nov and Caldilineae classis nov in the bacterial phylum Chloroflexi Int. J. Syst. Evol. Microbiol. 56 2006 1331 1340
49. 3 exposure are plant species-specific Plant Soil 376 2014 139 149
50. Y.H. Zheng, X. Li, Y.G. Li, B.H. Miao, H. Xu, M. Simmons, and X.H. Yang Contrasting responses of salinity-stressed salt-tolerant and intolerant winter wheat (Triticum aestivum L.) cultivars to ozone pollution Plant Physiol. Biochem. 52 2012 169 178
51. 2 accelerates flag leaf senescence in wheat due to ear photosynthesis which causes greater ear nitrogen sink capacity and ear carbon sink limitation Funct. Plant Biol. 36 2009 291 299
52. X.K. Zhu, Z.Z. Feng, T.F. Sun, X.C. Liu, H.Y. Tang, J.G. Zhu, W.S. Guo, and K. Kobayashi Effects of elevated ozone concentration on yield of four Chinese cultivars of winter wheat under fully open-air field conditions Glob. Change Biol. 17 2011 2697 2706