메뉴 건너뛰기




Volumn 72, Issue , 2013, Pages 93-102

Spatio-temporal variability of microbial abundance and community structure in the puddled layer of a paddy soil cultivated with wetland rice (Oryza sativa L.)

Author keywords

Archaea; Bacteria; Community structure; Microbial abundance; Paddy soil; Rhizosphere

Indexed keywords


EID: 84880160367     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2013.06.002     Document Type: Article
Times cited : (30)

References (72)
  • 1
    • 0002534759 scopus 로고
    • Growth and root development of lowland rice and its relation to oxygen supply
    • Alberda T.H. Growth and root development of lowland rice and its relation to oxygen supply. Plant Soil 1953, 5:1-28.
    • (1953) Plant Soil , vol.5 , pp. 1-28
    • Alberda, T.H.1
  • 2
    • 42349093774 scopus 로고    scopus 로고
    • Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
    • Amann R., Fuchs B.M. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat. Rev. Microbiol. 2008, 6:339-348.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 339-348
    • Amann, R.1    Fuchs, B.M.2
  • 3
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 1990, 56:1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 4
    • 84989732179 scopus 로고
    • Radial oxygen losses from intact rice roots as affected by distance from root apex, respiration and waterlogging
    • Armstrong W. Radial oxygen losses from intact rice roots as affected by distance from root apex, respiration and waterlogging. Physiol. Plant. 1971, 25:192-197.
    • (1971) Physiol. Plant. , vol.25 , pp. 192-197
    • Armstrong, W.1
  • 5
    • 0035015020 scopus 로고    scopus 로고
    • Characterization of root exudates at different growth stages of ten rice (Oryza sativa L.) cultivars
    • Aulakh M.S., Wassmann R., Bueno C., Kreuzwieser J., Rennenberg H. Characterization of root exudates at different growth stages of ten rice (Oryza sativa L.) cultivars. Plant Biol. 2001, 3:139-148.
    • (2001) Plant Biol. , vol.3 , pp. 139-148
    • Aulakh, M.S.1    Wassmann, R.2    Bueno, C.3    Kreuzwieser, J.4    Rennenberg, H.5
  • 7
    • 0033764695 scopus 로고    scopus 로고
    • Life at the oxic-anoxic interface: microbial activities and adaptations
    • Brune A., Frenzel P., Cypionka H. Life at the oxic-anoxic interface: microbial activities and adaptations. FEMS Microbiol. Rev. 2000, 24:691-710.
    • (2000) FEMS Microbiol. Rev. , vol.24 , pp. 691-710
    • Brune, A.1    Frenzel, P.2    Cypionka, H.3
  • 8
    • 77950927731 scopus 로고    scopus 로고
    • Arsenic-resistant bacteria associated with roots of the wild Cirsium arvense (L.) plant from an arsenic polluted soil, and screening of potential plant growth-promoting characteristics
    • Cavalca L., Zanchi R., Corsini A., Colombo M., Romagnoli C., Canzi E., Andreoni V. Arsenic-resistant bacteria associated with roots of the wild Cirsium arvense (L.) plant from an arsenic polluted soil, and screening of potential plant growth-promoting characteristics. Syst. Appl. Microbiol. 2010, 33:154-164.
    • (2010) Syst. Appl. Microbiol. , vol.33 , pp. 154-164
    • Cavalca, L.1    Zanchi, R.2    Corsini, A.3    Colombo, M.4    Romagnoli, C.5    Canzi, E.6    Andreoni, V.7
  • 10
    • 0032752386 scopus 로고    scopus 로고
    • Characterization and identification of numerically abundant culturable bacteria from the anoxic bulk soil of rice paddy microcosms
    • Chin K.J., Hahn D., Hengstmann U., Liesack W., Janssen P.H. Characterization and identification of numerically abundant culturable bacteria from the anoxic bulk soil of rice paddy microcosms. Appl. Environ. Microbiol. 1999, 65:5042-5049.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5042-5049
    • Chin, K.J.1    Hahn, D.2    Hengstmann, U.3    Liesack, W.4    Janssen, P.H.5
  • 11
    • 0032941406 scopus 로고    scopus 로고
    • Counting and size classification of active soil bacteria by fluorescence in situ hybridization with an rRNA oligonucleotide probe
    • Christensen H., Hansen M., Sørensen J. Counting and size classification of active soil bacteria by fluorescence in situ hybridization with an rRNA oligonucleotide probe. Appl. Environ. Microbiol. 1999, 65:1753-1761.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 1753-1761
    • Christensen, H.1    Hansen, M.2    Sørensen, J.3
  • 12
    • 84900057266 scopus 로고    scopus 로고
    • Methanogenic microbial communities associated with aquatic plants
    • Springer, Berlin, A. Varma, L. Abbott, D. Werner, R. Hampp (Eds.)
    • Conrad R. Methanogenic microbial communities associated with aquatic plants. Plant Surface Microbiology 2004, 35-50. Springer, Berlin. A. Varma, L. Abbott, D. Werner, R. Hampp (Eds.).
    • (2004) Plant Surface Microbiology , pp. 35-50
    • Conrad, R.1
  • 13
    • 35148855832 scopus 로고    scopus 로고
    • Microbial ecology of methanogens and methanotrophs
    • Conrad R. Microbial ecology of methanogens and methanotrophs. Adv. Agron. 2007, 96:1-63.
    • (2007) Adv. Agron. , vol.96 , pp. 1-63
    • Conrad, R.1
  • 14
    • 0344172842 scopus 로고    scopus 로고
    • The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set
    • Daims H., Brühl A., Amann R., Schleifer K.-H., Wagner M. The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 1999, 22:434-444.
    • (1999) Syst. Appl. Microbiol. , vol.22 , pp. 434-444
    • Daims, H.1    Brühl, A.2    Amann, R.3    Schleifer, K.-H.4    Wagner, M.5
  • 15
    • 0035489394 scopus 로고    scopus 로고
    • Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris
    • Dedysh S.N., Derakshani M., Liesack W. Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris. Appl. Environ. Microbiol. 2001, 67:4850-4857.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4850-4857
    • Dedysh, S.N.1    Derakshani, M.2    Liesack, W.3
  • 16
    • 46549086126 scopus 로고    scopus 로고
    • Improved detection of soil microorganisms using fluorescence in situ hybridization (FISH) and catalyzed reporter deposition (CARD-FISH)
    • Eickhorst T., Tippkötter R. Improved detection of soil microorganisms using fluorescence in situ hybridization (FISH) and catalyzed reporter deposition (CARD-FISH). Soil Biol. Biochem. 2008, 40:1883-1891.
    • (2008) Soil Biol. Biochem. , vol.40 , pp. 1883-1891
    • Eickhorst, T.1    Tippkötter, R.2
  • 17
    • 59349105679 scopus 로고    scopus 로고
    • Management-induced structural dynamics in paddy soils of south east China simulated in microcosms
    • Eickhorst T., Tippkötter R. Management-induced structural dynamics in paddy soils of south east China simulated in microcosms. Soil Tillage Res. 2009, 102:168-178.
    • (2009) Soil Tillage Res. , vol.102 , pp. 168-178
    • Eickhorst, T.1    Tippkötter, R.2
  • 18
    • 0035377334 scopus 로고    scopus 로고
    • Changes in activity and community structure of methane-oxidizing bacteria over the growth period of rice
    • Eller G., Frenzel P. Changes in activity and community structure of methane-oxidizing bacteria over the growth period of rice. Appl. Environ. Microbiol. 2001, 67:2395-2403.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 2395-2403
    • Eller, G.1    Frenzel, P.2
  • 19
    • 0035339207 scopus 로고    scopus 로고
    • Group-specific 16S rRNA targeted probes for the detection of type I and type II methanotrophs by fluorescence in situ hybridisation
    • Eller G., Stubner S., Frenzel P. Group-specific 16S rRNA targeted probes for the detection of type I and type II methanotrophs by fluorescence in situ hybridisation. FEMS Microbiol. Lett. 2001, 198:91-97.
    • (2001) FEMS Microbiol. Lett. , vol.198 , pp. 91-97
    • Eller, G.1    Stubner, S.2    Frenzel, P.3
  • 20
    • 11144303552 scopus 로고    scopus 로고
    • Comparing field and microcosm experiments: a case study on methano- and methylo-trophic bacteria in paddy soil
    • Eller G., Krüger M., Frenzel P. Comparing field and microcosm experiments: a case study on methano- and methylo-trophic bacteria in paddy soil. FEMS Microbiol. Ecol. 2005, 51:279-291.
    • (2005) FEMS Microbiol. Ecol. , vol.51 , pp. 279-291
    • Eller, G.1    Krüger, M.2    Frenzel, P.3
  • 21
    • 39849101191 scopus 로고    scopus 로고
    • A novel lineage of proteobacteria involved in formation of marine Fe-oxidizing microbial mat communities
    • Emerson D., Rentz J.A., Lilburn T.G., Davis R.E., Aldrich H., Chan C., Moyer C.L. A novel lineage of proteobacteria involved in formation of marine Fe-oxidizing microbial mat communities. PLoS ONE 2007, 8:e667.
    • (2007) PLoS ONE , vol.8
    • Emerson, D.1    Rentz, J.A.2    Lilburn, T.G.3    Davis, R.E.4    Aldrich, H.5    Chan, C.6    Moyer, C.L.7
  • 22
    • 33746531322 scopus 로고    scopus 로고
    • Genome of rice cluster I archaea - the key methane producers in the rice rhizosphere
    • Erkel C., Kube M., Reinhardt R., Liesack W. Genome of rice cluster I archaea - the key methane producers in the rice rhizosphere. Science 2006, 313:370-372.
    • (2006) Science , vol.313 , pp. 370-372
    • Erkel, C.1    Kube, M.2    Reinhardt, R.3    Liesack, W.4
  • 23
    • 0033060865 scopus 로고    scopus 로고
    • Rice roots and methanogenesis in a paddy soil: ferric iron as an alternative electron acceptor in the rooted soil
    • Frenzel P., Bosse U., Janssen P.H. Rice roots and methanogenesis in a paddy soil: ferric iron as an alternative electron acceptor in the rooted soil. Soil Biol. Biochem. 1999, 31:421-430.
    • (1999) Soil Biol. Biochem. , vol.31 , pp. 421-430
    • Frenzel, P.1    Bosse, U.2    Janssen, P.H.3
  • 24
    • 0032401823 scopus 로고    scopus 로고
    • 4 oxidation: the activity of bacteria, their distribution and the microenvironment
    • 4 oxidation: the activity of bacteria, their distribution and the microenvironment. Soil Biol. Biochem. 1998, 30:1903-1916.
    • (1998) Soil Biol. Biochem. , vol.30 , pp. 1903-1916
    • Gilbert, B.1    Frenzel, P.2
  • 25
    • 34748886657 scopus 로고    scopus 로고
    • Paleontological statistics software package for education and data analysis
    • Hammer Ø., Harper D.A.T., Ryan P.D. Paleontological statistics software package for education and data analysis. Paleontol. Electron. 2001, 4:1-9.
    • (2001) Paleontol. Electron. , vol.4 , pp. 1-9
    • Hammer, Ø.1    Harper, D.A.T.2    Ryan, P.D.3
  • 26
    • 0034537565 scopus 로고    scopus 로고
    • Vertical distribution of the methanotrophic community after drainage of rice field soil
    • Henckel T., Jäckel U., Conrad R. Vertical distribution of the methanotrophic community after drainage of rice field soil. FEMS Microbiol. Ecol. 2001, 34:279-291.
    • (2001) FEMS Microbiol. Ecol. , vol.34 , pp. 279-291
    • Henckel, T.1    Jäckel, U.2    Conrad, R.3
  • 27
    • 0030739128 scopus 로고    scopus 로고
    • Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
    • Heuer H., Krsek M., Baker P., Smalla K., Wellington E.M.H. Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl. Environ. Microbiol. 1997, 63:3233-3241.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3233-3241
    • Heuer, H.1    Krsek, M.2    Baker, P.3    Smalla, K.4    Wellington, E.M.H.5
  • 28
    • 0037360511 scopus 로고    scopus 로고
    • Ramlibacter tataouinensis gen. nov., sp. nov., and Ramlibacter henchirensis sp. nov., cyst-producing bacteria isolated from subdesert soil in Tunisia
    • Heulin T., Barakat M., Christen R., Lesourd M., Sutra L., De Luca G., Achouak W. Ramlibacter tataouinensis gen. nov., sp. nov., and Ramlibacter henchirensis sp. nov., cyst-producing bacteria isolated from subdesert soil in Tunisia. Int. J. Syst. Evol. Microbiol. 2003, 53:589-594.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 589-594
    • Heulin, T.1    Barakat, M.2    Christen, R.3    Lesourd, M.4    Sutra, L.5    De Luca, G.6    Achouak, W.7
  • 30
    • 79953029779 scopus 로고    scopus 로고
    • Recovery of methanotrophs from disturbance: population dynamics, evenness and functioning
    • Ho A., Lüke C., Frenzel P. Recovery of methanotrophs from disturbance: population dynamics, evenness and functioning. ISME J. 2011, 5:750-758.
    • (2011) ISME J. , vol.5 , pp. 750-758
    • Ho, A.1    Lüke, C.2    Frenzel, P.3
  • 32
    • 0033771975 scopus 로고    scopus 로고
    • Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization
    • Jurgens G., Glöckner F., Amann R., Saano A., Montonen L., Likolammi M., Munster U. Identification of novel Archaea in bacterioplankton of a boreal forest lake by phylogenetic analysis and fluorescent in situ hybridization. FEMS Microbiol. Ecol. 2000, 34:45-56.
    • (2000) FEMS Microbiol. Ecol. , vol.34 , pp. 45-56
    • Jurgens, G.1    Glöckner, F.2    Amann, R.3    Saano, A.4    Montonen, L.5    Likolammi, M.6    Munster, U.7
  • 34
    • 84874111903 scopus 로고    scopus 로고
    • Evaluation of commercial kits for the extraction of DNA from paddy soils
    • Knauth S., Schmidt H., Tippkötter R. Evaluation of commercial kits for the extraction of DNA from paddy soils. Lett. Appl. Microbiol. 2012, 56:222-228.
    • (2012) Lett. Appl. Microbiol. , vol.56 , pp. 222-228
    • Knauth, S.1    Schmidt, H.2    Tippkötter, R.3
  • 36
    • 77953326234 scopus 로고    scopus 로고
    • Spatial heterogeneity of methanotrophs: a geostatistical analysis of pmoA-based T-RFLP patterns in a paddy soil
    • Krause S., Lüke C., Frenzel P. Spatial heterogeneity of methanotrophs: a geostatistical analysis of pmoA-based T-RFLP patterns in a paddy soil. Environ. Microbiol. Rep. 2009, 1:393-397.
    • (2009) Environ. Microbiol. Rep. , vol.1 , pp. 393-397
    • Krause, S.1    Lüke, C.2    Frenzel, P.3
  • 37
    • 12344300683 scopus 로고    scopus 로고
    • Activity, structure and dynamics of the methanogenic archaeal community in a flooded Italian rice field
    • Krüger M., Frenzel P., Kemnitz D., Conrad R. Activity, structure and dynamics of the methanogenic archaeal community in a flooded Italian rice field. FEMS Microbiol. Ecol. 2005, 51:323-331.
    • (2005) FEMS Microbiol. Ecol. , vol.51 , pp. 323-331
    • Krüger, M.1    Frenzel, P.2    Kemnitz, D.3    Conrad, R.4
  • 39
    • 33646118981 scopus 로고    scopus 로고
    • Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization
    • Lin X., Wakeham S.G., Putnam I.F., Astor Y.M., Scranton M.I., Chistoserdov A.Y., Taylor G.T. Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Appl. Environ. Microbiol. 2006, 72:2679-2690.
    • (2006) Appl. Environ. Microbiol. , vol.72 , pp. 2679-2690
    • Lin, X.1    Wakeham, S.G.2    Putnam, I.F.3    Astor, Y.M.4    Scranton, M.I.5    Chistoserdov, A.Y.6    Taylor, G.T.7
  • 40
    • 62049085009 scopus 로고    scopus 로고
    • Abundance and community structure of sulfate reducing prokaryotes in a paddy soil of southern China under different fertilization regimes
    • Liu X.-Z., Zhang L.-M., Prosser J.I., He J.-Z. Abundance and community structure of sulfate reducing prokaryotes in a paddy soil of southern China under different fertilization regimes. Soil Biol. Biochem. 2009, 41:687-694.
    • (2009) Soil Biol. Biochem. , vol.41 , pp. 687-694
    • Liu, X.-Z.1    Zhang, L.-M.2    Prosser, J.I.3    He, J.-Z.4
  • 41
    • 0036795787 scopus 로고    scopus 로고
    • Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment
    • Loy A., Lehner A., Lee N., Adamczyk J., Meier H., Ernst J., Schleifer K.-H., Wagner M. Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl. Environ. Microbiol. 2002, 68:5064-5081.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 5064-5081
    • Loy, A.1    Lehner, A.2    Lee, N.3    Adamczyk, J.4    Meier, H.5    Ernst, J.6    Schleifer, K.-H.7    Wagner, M.8
  • 42
    • 33846102841 scopus 로고    scopus 로고
    • ProbeBase - an online resource for rRNA-targeted oligonucleotide probes: new features
    • Loy A., Maixner F., Wagner M., Horn M. probeBase - an online resource for rRNA-targeted oligonucleotide probes: new features. Nucleic Acids Res. 2007, 35:D800-D804.
    • (2007) Nucleic Acids Res. , vol.35
    • Loy, A.1    Maixner, F.2    Wagner, M.3    Horn, M.4
  • 43
    • 14344266223 scopus 로고    scopus 로고
    • Detecting active methanogenic populations on rice roots using stable isotope probing
    • Lu Y., Lueders T., Friedrich M.W., Conrad R. Detecting active methanogenic populations on rice roots using stable isotope probing. Environ. Microbiol. 2005, 7:326-336.
    • (2005) Environ. Microbiol. , vol.7 , pp. 326-336
    • Lu, Y.1    Lueders, T.2    Friedrich, M.W.3    Conrad, R.4
  • 44
    • 0343503030 scopus 로고    scopus 로고
    • Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores
    • Lüdemann H., Arth I., Liesack W. Spatial changes in the bacterial community structure along a vertical oxygen gradient in flooded paddy soil cores. Appl. Environ. Microbiol. 2000, 66:754-762.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 754-762
    • Lüdemann, H.1    Arth, I.2    Liesack, W.3
  • 45
    • 0033933786 scopus 로고    scopus 로고
    • Archaeal population dynamics during sequential reduction processes in rice field soil
    • Lueders T., Friedrich M. Archaeal population dynamics during sequential reduction processes in rice field soil. Appl. Environ. Microbiol. 2000, 66:2732-2742.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 2732-2742
    • Lueders, T.1    Friedrich, M.2
  • 47
    • 0027068041 scopus 로고
    • Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions
    • Manz W., Amann R., Ludwig W., Wagner M., Schleifer K.-H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst. Appl. Microbiol. 1992, 15:593-600.
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5
  • 48
    • 9344247522 scopus 로고    scopus 로고
    • Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment
    • Manz W., Amann R., Ludwig W., Vancanneyt M., Schleifer K.-H. Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment. Microbiology 1996, 142:1097-1106.
    • (1996) Microbiology , vol.142 , pp. 1097-1106
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Vancanneyt, M.4    Schleifer, K.-H.5
  • 49
    • 0025198352 scopus 로고
    • Factors influencing the population of methanogenic bacteria and the initiation of methane production upon flooding of paddy soil
    • Mayer H.P., Conrad R. Factors influencing the population of methanogenic bacteria and the initiation of methane production upon flooding of paddy soil. FEMS Microbiol. Ecol. 1990, 73:103-112.
    • (1990) FEMS Microbiol. Ecol. , vol.73 , pp. 103-112
    • Mayer, H.P.1    Conrad, R.2
  • 50
    • 43849095105 scopus 로고    scopus 로고
    • The ecology and biotechnology of sulphate-reducing bacteria
    • Muyzer G., Stams A.J.M. The ecology and biotechnology of sulphate-reducing bacteria. Nat. Rev. Microbiol. 2008, 6:441-454.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 441-454
    • Muyzer, G.1    Stams, A.J.M.2
  • 51
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 52
    • 0029097821 scopus 로고
    • Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments
    • Muyzer G., Teske A., Wirson C.O., Jannasch H.W. Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch. Microbiol. 1995, 164:165-172.
    • (1995) Arch. Microbiol. , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirson, C.O.3    Jannasch, H.W.4
  • 54
    • 84865556003 scopus 로고    scopus 로고
    • Microbial oxidation and reduction of iron in the root zone and influences on metal mobility
    • Wiley and Sons, New Jersey, A. Violante, P.M. Huang, G.M. Gadd (Eds.)
    • Neubauer S.C., Emerson D., Megonigal J.P. Microbial oxidation and reduction of iron in the root zone and influences on metal mobility. Biophysico-chemical Processes of Heavy Metals and Metalloids in Soil Environments 2008, 339-371. Wiley and Sons, New Jersey. A. Violante, P.M. Huang, G.M. Gadd (Eds.).
    • (2008) Biophysico-chemical Processes of Heavy Metals and Metalloids in Soil Environments , pp. 339-371
    • Neubauer, S.C.1    Emerson, D.2    Megonigal, J.P.3
  • 55
    • 14344253895 scopus 로고    scopus 로고
    • Succession of bacterial community structure and diversity in a paddy soil oxygen gradient
    • Noll M., Matthies D., Frenzel P., Derakshani M., Liesack W. Succession of bacterial community structure and diversity in a paddy soil oxygen gradient. Environ. Microbiol. 2005, 7:382-395.
    • (2005) Environ. Microbiol. , vol.7 , pp. 382-395
    • Noll, M.1    Matthies, D.2    Frenzel, P.3    Derakshani, M.4    Liesack, W.5
  • 56
    • 70350402562 scopus 로고
    • The chemistry of submerged soils
    • Ponnamperuma F.N. The chemistry of submerged soils. Adv. Agron. 1972, 24:29-96.
    • (1972) Adv. Agron. , vol.24 , pp. 29-96
    • Ponnamperuma, F.N.1
  • 57
    • 0034782286 scopus 로고    scopus 로고
    • Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production
    • Ramakrishnan B., Lueders T., Dunfield P.F., Conrad R., Friedrich M.W. Archaeal community structures in rice soils from different geographical regions before and after initiation of methane production. FEMS Microbiol. Ecol. 2001, 37:175-186.
    • (2001) FEMS Microbiol. Ecol. , vol.37 , pp. 175-186
    • Ramakrishnan, B.1    Lueders, T.2    Dunfield, P.F.3    Conrad, R.4    Friedrich, M.W.5
  • 58
    • 0032818834 scopus 로고    scopus 로고
    • Microsensor analysis of oxygen and pH in the rice rhizosphere under field and laboratory conditions
    • Revsbech N.P., Pedersen O., Reichardt W., Briones A. Microsensor analysis of oxygen and pH in the rice rhizosphere under field and laboratory conditions. Biol. Fertil. Soils 1999, 29:379-385.
    • (1999) Biol. Fertil. Soils , vol.29 , pp. 379-385
    • Revsbech, N.P.1    Pedersen, O.2    Reichardt, W.3    Briones, A.4
  • 59
    • 0028172253 scopus 로고
    • In situ probing of gram-positive bacteria with high DNA G+C content using 23S rRNA targeted oligonucleotides
    • Roller C., Wagner M., Amann R., Ludwig W., Schleifer K.-H. In situ probing of gram-positive bacteria with high DNA G+C content using 23S rRNA targeted oligonucleotides. Microbiology 1994, 140:2849-2858.
    • (1994) Microbiology , vol.140 , pp. 2849-2858
    • Roller, C.1    Wagner, M.2    Amann, R.3    Ludwig, W.4    Schleifer, K.-H.5
  • 60
    • 0034940124 scopus 로고    scopus 로고
    • Structure and diversity of gram-negative sulfate-reducing bacteria on rice roots
    • Scheid D., Stubner S. Structure and diversity of gram-negative sulfate-reducing bacteria on rice roots. FEMS Microbiol. Ecol. 2001, 36:175-183.
    • (2001) FEMS Microbiol. Ecol. , vol.36 , pp. 175-183
    • Scheid, D.1    Stubner, S.2
  • 61
    • 79952628571 scopus 로고    scopus 로고
    • Monitoring of root growth and redox conditions in paddy soil rhizotrons by redox electrodes and image analysis
    • Schmidt H., Eickhorst T., Tippkötter R. Monitoring of root growth and redox conditions in paddy soil rhizotrons by redox electrodes and image analysis. Plant Soil 2011, 341:221-232.
    • (2011) Plant Soil , vol.341 , pp. 221-232
    • Schmidt, H.1    Eickhorst, T.2    Tippkötter, R.3
  • 62
    • 84868236665 scopus 로고    scopus 로고
    • Evaluation of tyramide solutions for an improved detection and enumeration of single microbial cells in soil by CARD-FISH
    • Schmidt H., Eickhorst T., Tippkötter R. Evaluation of tyramide solutions for an improved detection and enumeration of single microbial cells in soil by CARD-FISH. J. Microbiol. Methods 2012, 91:399-405.
    • (2012) J. Microbiol. Methods , vol.91 , pp. 399-405
    • Schmidt, H.1    Eickhorst, T.2    Tippkötter, R.3
  • 63
    • 84895075576 scopus 로고    scopus 로고
    • Detection and quantification of native microbial populations on soil-grown rice roots by catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH)
    • (submitted for publication)
    • Schmidt H., Eickhorst T. Detection and quantification of native microbial populations on soil-grown rice roots by catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH). FEMS Microbiol. Ecol. 2013, (submitted for publication).
    • (2013) FEMS Microbiol. Ecol.
    • Schmidt, H.1    Eickhorst, T.2
  • 65
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • Wiley and Sons, Chichester, E. Stackebrandt, M. Goodfellow (Eds.)
    • Stahl D.A., Amann R.I. Development and application of nucleic acid probes. Nucleic Acid Techniques in Bacterial Systematics 1991, 205-248. Wiley and Sons, Chichester. E. Stackebrandt, M. Goodfellow (Eds.).
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.I.2
  • 66
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 67
    • 0027339723 scopus 로고
    • Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
    • Wallner G., Amann R., Beisker W. Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 1993, 14:136-143.
    • (1993) Cytometry , vol.14 , pp. 136-143
    • Wallner, G.1    Amann, R.2    Beisker, W.3
  • 68
    • 77954316230 scopus 로고    scopus 로고
    • Phylogenetic diversity of dissimilatory ferric iron reducers in paddy soil of Hunan, South China
    • Wang X.-J., Yang J., Chen X.-P., Sun G.-X., Zhu Y.-G. Phylogenetic diversity of dissimilatory ferric iron reducers in paddy soil of Hunan, South China. J. Soils Sediments 2009, 9:568-577.
    • (2009) J. Soils Sediments , vol.9 , pp. 568-577
    • Wang, X.-J.1    Yang, J.2    Chen, X.-P.3    Sun, G.-X.4    Zhu, Y.-G.5
  • 69
    • 1842576603 scopus 로고    scopus 로고
    • DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil
    • Watanabe T., Asakawa S., Nakamura A., Nagaoka K., Kimura M. DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil. FEMS Microbiol. Lett. 2004, 232:153-163.
    • (2004) FEMS Microbiol. Lett. , vol.232 , pp. 153-163
    • Watanabe, T.1    Asakawa, S.2    Nakamura, A.3    Nagaoka, K.4    Kimura, M.5
  • 70
    • 33646270862 scopus 로고    scopus 로고
    • Community structure of methanogenic archaea in paddy field soil under double cropping (rice-wheat)
    • Watanabe T., Kimura M., Asakawa S. Community structure of methanogenic archaea in paddy field soil under double cropping (rice-wheat). Soil Biol. Biochem. 2006, 38:1264-1274.
    • (2006) Soil Biol. Biochem. , vol.38 , pp. 1264-1274
    • Watanabe, T.1    Kimura, M.2    Asakawa, S.3
  • 71
    • 36849013617 scopus 로고    scopus 로고
    • Characterization of neutrophilic Fe(II)-oxidizing bacteria isolated from the rhizosphere of wetland plants and description of Ferritrophicum radicicola gen. nov. sp. nov., and Sideroxydans paludicola sp. nov
    • Weiss J.V., Rentz J.A., Plaia T., Neubauer S.C., Merrill-Floyd M., Lilburn T., Bradburne C., Megonigal J.P., Emerson D. Characterization of neutrophilic Fe(II)-oxidizing bacteria isolated from the rhizosphere of wetland plants and description of Ferritrophicum radicicola gen. nov. sp. nov., and Sideroxydans paludicola sp. nov. Geomicrobiol. J. 2007, 24:559-570.
    • (2007) Geomicrobiol. J. , vol.24 , pp. 559-570
    • Weiss, J.V.1    Rentz, J.A.2    Plaia, T.3    Neubauer, S.C.4    Merrill-Floyd, M.5    Lilburn, T.6    Bradburne, C.7    Megonigal, J.P.8    Emerson, D.9
  • 72
    • 70349127272 scopus 로고    scopus 로고
    • Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil
    • Yoshida M., Ishii S., Otsuka S., Senoo K. Temporal shifts in diversity and quantity of nirS and nirK in a rice paddy field soil. Soil Biol. Biochem. 2009, 41:2044-2051.
    • (2009) Soil Biol. Biochem. , vol.41 , pp. 2044-2051
    • Yoshida, M.1    Ishii, S.2    Otsuka, S.3    Senoo, K.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.