메뉴 건너뛰기




Volumn 14, Issue 1, 2015, Pages 50-60

Functional roles of nucleosome stability and dynamics

Author keywords

Chromatin; DNA; Gene regulation; Nucleosome; Stress response; Transcription factor

Indexed keywords

ADENOSINE TRIPHOSPHATE; DNA; HISTONE; TRANSCRIPTION FACTOR; NUCLEOSOME; PROTEIN BINDING;

EID: 84922441986     PISSN: 20412649     EISSN: 20412657     Source Type: Journal    
DOI: 10.1093/bfgp/elu038     Document Type: Article
Times cited : (34)

References (62)
  • 2
    • 0031232412 scopus 로고    scopus 로고
    • Biophysics of the DNA molecule
    • Frank-Kamenetskii MD. Biophysics of the DNA molecule. Phys Rep 1997;288: 13-60.
    • (1997) Phys Rep , vol.288 , pp. 13-60
    • Frank-kamenetskii, M.D.1
  • 4
    • 0027431478 scopus 로고
    • Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA
    • Arents G, Moudrianakis EN. Topography of the histone octamer surface: repeating structural motifs utilized in the docking of nucleosomal DNA. Proc Natl Acad Sci USA 1993;90: 10489-93.
    • (1993) Proc Natl Acad Sci USA , vol.90 , pp. 10489-10493
    • Arents, G.1    Moudrianakis, E.N.2
  • 6
    • 84889361310 scopus 로고    scopus 로고
    • Interactions of histones with DNA: nucleosome assembly, stability, dynamics, and higher order structure
    • Dias R, Lindman B. (eds), John Wiley & Sons, Isnc
    • Rippe K, Mazurkiewicz J, Kepper N. Interactions of histones with DNA: nucleosome assembly, stability, dynamics, and higher order structure. In: Dias R, Lindman B. (eds). DNA Interactions with Polymers and Surfactants. John Wiley & Sons, Isnc., 2008:135-72.
    • (2008) DNA Interactions with Polymers and Surfactants , pp. 135-172
    • Rippe, K.1    Mazurkiewicz, J.2    Kepper, N.3
  • 7
    • 0016221697 scopus 로고
    • Chromatin structure: a repeating unit of histones and DNA
    • Kornberg RD. Chromatin structure: a repeating unit of histones and DNA. Science 1974;184: 868-71.
    • (1974) Science , vol.184 , pp. 868-871
    • Kornberg, R.D.1
  • 8
    • 84862979650 scopus 로고    scopus 로고
    • A map of nucleosome positions in yeast at base-pair resolution
    • Brogaard K, Xi L, Wang JP, et al. A map of nucleosome positions in yeast at base-pair resolution. Nature 2012;486: 496-501.
    • (2012) Nature , vol.486 , pp. 496-501
    • Brogaard, K.1    Xi, L.2    Wang, J.P.3
  • 9
    • 85015069067 scopus 로고    scopus 로고
    • Controlling the double helix
    • Felsenfeld G, Groudine M. Controlling the double helix. Nature 2003;421: 448-53.
    • (2003) Nature , vol.421 , pp. 448-453
    • Felsenfeld, G.1    Groudine, M.2
  • 10
    • 0036307707 scopus 로고    scopus 로고
    • Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution
    • Davey C, Sargent D, Luger K, et al. Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 Å resolution. J Mol Biol 2002;319: 1097-13.
    • (2002) J Mol Biol , vol.319 , pp. 1097-1113
    • Davey, C.1    Sargent, D.2    Luger, K.3
  • 11
    • 0037992395 scopus 로고    scopus 로고
    • The structure of DNA in the nucleosome core
    • Richmond TJ, Davey CA. The structure of DNA in the nucleosome core. Nature 2003;423: 145-50.
    • (2003) Nature , vol.423 , pp. 145-150
    • Richmond, T.J.1    Davey, C.A.2
  • 12
    • 77957252758 scopus 로고    scopus 로고
    • Crystal structures of nucleosome core particles containing the 601 strong positioning sequence
    • Vasudevan D, Chua EYD, Davey C. Crystal structures of nucleosome core particles containing the 601 strong positioning sequence. J Mol Biol 2010;403: 1-10.
    • (2010) J Mol Biol , vol.403 , pp. 1-10
    • Vasudevan, D.1    Chua, E.Y.D.2    Davey, C.3
  • 13
    • 1842411320 scopus 로고    scopus 로고
    • Crystal structure of the nucleosome core particle at 2.8 Å resolution
    • Luger K, Mäder AW, Richmond RK, et al. Crystal structure of the nucleosome core particle at 2.8 Å resolution. Nature 1997;389: 251-60.
    • (1997) Nature , vol.389 , pp. 251-260
    • Luger, K.1    Mäder, A.W.2    Richmond, R.K.3
  • 14
    • 0037604739 scopus 로고    scopus 로고
    • The physics of chromatin
    • Schiessel H. The physics of chromatin. J Phys Cond Matter 2003;15: R699-774.
    • (2003) J Phys Cond Matter , vol.15 , pp. R699-774
    • Schiessel, H.1
  • 15
    • 2342593131 scopus 로고    scopus 로고
    • Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations
    • Morozov AV, Kortemme T, Tsemekhman K, et al. Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations. Proc Natl Acad Sci USA 2004;101: 6946-51.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 6946-6951
    • Morozov, A.V.1    Kortemme, T.2    Tsemekhman, K.3
  • 16
    • 84859329057 scopus 로고    scopus 로고
    • DNA structure, nucleosome placement and chromatin remodelling: a perspective
    • Travers AA, Vaillant C, Arneodo A, et al. DNA structure, nucleosome placement and chromatin remodelling: a perspective. Biochem SocTrans 2012;40: 335-40.
    • (2012) Biochem SocTrans , vol.40 , pp. 335-340
    • Travers, A.A.1    Vaillant, C.2    Arneodo, A.3
  • 17
    • 79961220557 scopus 로고    scopus 로고
    • A quantitative model of nucleosome dynamics
    • Forties R, North J, Javaid S, et al. A quantitative model of nucleosome dynamics. Nucleic Acids Res 2011;39: 8306-13.
    • (2011) Nucleic Acids Res , vol.39 , pp. 8306-8313
    • Forties, R.1    North, J.2    Javaid, S.3
  • 18
    • 0032512794 scopus 로고    scopus 로고
    • New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning
    • Lowary PT, Widom J. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning. J Mol Biol 1998;276: 19-42.
    • (1998) J Mol Biol , vol.276 , pp. 19-42
    • Lowary, P.T.1    Widom, J.2
  • 19
    • 1642290007 scopus 로고    scopus 로고
    • Measurement of histone-DNA interaction free energy in nucleosomes
    • Thåström A, Lowary P, Widom J. Measurement of histone-DNA interaction free energy in nucleosomes. Methods 2004;33: 33-44.
    • (2004) Methods , vol.33 , pp. 33-44
    • Thåström, A.1    Lowary, P.2    Widom, J.3
  • 20
    • 0025887821 scopus 로고
    • Mobility of positioned nucleosomes on 5 S rDNA
    • Pennings S, Meersseman G, Bradbury EM. Mobility of positioned nucleosomes on 5 S rDNA. J Mol Biol 1991;220: 101-10.
    • (1991) J Mol Biol , vol.220 , pp. 101-110
    • Pennings, S.1    Meersseman, G.2    Bradbury, E.M.3
  • 21
    • 0032559424 scopus 로고    scopus 로고
    • Positioning and stability of nucleosomes on MMTV 3'LTR sequences
    • Flaus A, Richmond TJ. Positioning and stability of nucleosomes on MMTV 3'LTR sequences. J Mol Biol 1998;275: 427-41.
    • (1998) J Mol Biol , vol.275 , pp. 427-441
    • Flaus, A.1    Richmond, T.J.2
  • 22
    • 0028130301 scopus 로고
    • Linker histones H1 and H5 prevent the mobility of positioned nucleosomes
    • Pennings S, Meersseman G, Bradbury EM. Linker histones H1 and H5 prevent the mobility of positioned nucleosomes. Proc Natl Acad Sci USA 1994;91: 10275-9.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 10275-10279
    • Pennings, S.1    Meersseman, G.2    Bradbury, E.M.3
  • 23
    • 44749086844 scopus 로고    scopus 로고
    • The linker-protein network: control of nucleosomal DNA accessibility
    • Zlatanova J, Seebart C, Tomschik M. The linker-protein network: control of nucleosomal DNA accessibility. Trends Biochem Sci 2008;33: 247-53.
    • (2008) Trends Biochem Sci , vol.33 , pp. 247-253
    • Zlatanova, J.1    Seebart, C.2    Tomschik, M.3
  • 24
    • 77953104932 scopus 로고    scopus 로고
    • Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome
    • Syed SH, Goutte-Gattat D, Becker N, et al. Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome. Proc Natl Acad Sci USA 2010;107: 9620-5.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 9620-9625
    • Syed, S.H.1    Goutte-gattat, D.2    Becker, N.3
  • 25
    • 0035820523 scopus 로고    scopus 로고
    • Polymer reptation and nucleosome repositioning
    • Schiessel H, Widom J, Bruinsma R, et al. Polymer reptation and nucleosome repositioning. Phys Rev Lett 2001;86: 4414-7.
    • (2001) Phys Rev Lett , vol.86 , pp. 4414-4417
    • Schiessel, H.1    Widom, J.2    Bruinsma, R.3
  • 26
    • 0242677113 scopus 로고    scopus 로고
    • Chromatin dynamics: nucleosomes go mobile through twist defects
    • Kulic I, Schiessel H. Chromatin dynamics: nucleosomes go mobile through twist defects. Phys Rev Lett 2003;91: 148103.
    • (2003) Phys Rev Lett , vol.91 , pp. 148103
    • Kulic, I.1    Schiessel, H.2
  • 27
    • 33745790132 scopus 로고    scopus 로고
    • Chromatin remodelling: the industrial revolution of DNA around histones
    • Saha A, Wittmeyer J, Cairns BR. Chromatin remodelling: the industrial revolution of DNA around histones. Nat Rev Mol Cell Biol 2006;7: 437-47.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 437-447
    • Saha, A.1    Wittmeyer, J.2    Cairns, B.R.3
  • 28
    • 80052656113 scopus 로고    scopus 로고
    • Targeting chromatin re-modelers: signals and search mechanisms
    • Erdel F, Krug J, Längst G, et al. Targeting chromatin re-modelers: signals and search mechanisms. Biochim Biophys Acta 2011;1809: 497-508.
    • (2011) Biochim Biophys Acta , vol.1809 , pp. 497-508
    • Erdel, F.1    Krug, J.2    Längst, G.3
  • 29
    • 78549252106 scopus 로고    scopus 로고
    • Time-resolved measurements of intracellular ATP in the yeast Saccharomyces cerevisiae using a new type of nanobiosensor
    • Ozalp VC, Pedersen TR, Nielsen LJ, et al. Time-resolved measurements of intracellular ATP in the yeast Saccharomyces cerevisiae using a new type of nanobiosensor. J Biol Chem 2010;285: 37579-88.
    • (2010) J Biol Chem , vol.285 , pp. 37579-37588
    • Ozalp, V.C.1    Pedersen, T.R.2    Nielsen, L.J.3
  • 30
    • 0029665879 scopus 로고    scopus 로고
    • 31P NMR magnetization transfer study of the control of ATP turnover in Saccharomyces cerevisiae
    • 31P NMR magnetization transfer study of the control of ATP turnover in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 1996;93: 6399-404.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 6399-6404
    • Sheldon, J.G.1    Williams, S.P.2    Fulton, A.M.3
  • 31
    • 35348984181 scopus 로고    scopus 로고
    • DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes
    • Rippe K, Schrader A, Riede P, et al. DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes. Proc Natl Acad Sci USA 2007;104: 15635-40.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 15635-15640
    • Rippe, K.1    Schrader, A.2    Riede, P.3
  • 32
    • 0028791330 scopus 로고
    • Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation
    • Polach KJ, Widom J. Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation. J Mol Biol 1995;254: 130-49.
    • (1995) J Mol Biol , vol.254 , pp. 130-149
    • Polach, K.J.1    Widom, J.2
  • 33
    • 3542998667 scopus 로고    scopus 로고
    • Nucleosomes facilitate their own invasion
    • Li G, Widom J. Nucleosomes facilitate their own invasion. Nat Struct Mol Biol 2004;11: 763-9.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 763-769
    • Li, G.1    Widom, J.2
  • 34
    • 11444262202 scopus 로고    scopus 로고
    • Rapid spontaneous accessibility of nucleosomal DNA
    • Li G, Levitus M, Bustamante C, et al. Rapid spontaneous accessibility of nucleosomal DNA. Nat Struct Mol Biol 2004;12: 46-53.
    • (2004) Nat Struct Mol Biol , vol.12 , pp. 46-53
    • Li, G.1    Levitus, M.2    Bustamante, C.3
  • 35
    • 60349089645 scopus 로고    scopus 로고
    • Nucleosome positioning and gene regulation: advances through genomics
    • Jiang C, Pugh BF. Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Genet 2009;10: 161-72.
    • (2009) Nat Rev Genet , vol.10 , pp. 161-172
    • Jiang, C.1    Pugh, B.F.2
  • 36
    • 77957872443 scopus 로고    scopus 로고
    • Genomic studies and computational predictions of nucleosome positions and formation energies
    • Tolkunov D, Morozov AV. Genomic studies and computational predictions of nucleosome positions and formation energies. Adv Prot Chem Struc Biol 2010;79: 1-57.
    • (2010) Adv Prot Chem Struc Biol , vol.79 , pp. 1-57
    • Tolkunov, D.1    Morozov, A.V.2
  • 37
    • 62649085538 scopus 로고    scopus 로고
    • The DNA-encoded nucleosome organization of a eukaryotic genome
    • Kaplan N, Moore IK, Fondufe-Mittendorf Y, et al. The DNA-encoded nucleosome organization of a eukaryotic genome. Nature; 458:362-6.
    • Nature , vol.458 , pp. 362-366
    • Kaplan, N.1    Moore, I.K.2    Fondufe-mittendorf, Y.3
  • 38
    • 83755224395 scopus 로고    scopus 로고
    • Activation-induced disruption of nucleosome position clusters on the coding regions of Gcn4-dependent genes extends into neighbouring genes
    • Cole HA, Howard BH, Clark DJ. Activation-induced disruption of nucleosome position clusters on the coding regions of Gcn4-dependent genes extends into neighbouring genes. Nucleic Acids Res 2011;39: 9521-35.
    • (2011) Nucleic Acids Res , vol.39 , pp. 9521-9535
    • Cole, H.A.1    Howard, B.H.2    Clark, D.J.3
  • 39
    • 78650839429 scopus 로고    scopus 로고
    • The effect of micrococcal nuclease digestion on nucleosome positioning data
    • Chung HR, Dunkel I, Heise F, et al. The effect of micrococcal nuclease digestion on nucleosome positioning data. PLoS One 2010;5: e15754.
    • (2010) PLoS One , vol.5 , pp. e15754
    • Chung, H.R.1    Dunkel, I.2    Heise, F.3
  • 40
    • 84865500837 scopus 로고    scopus 로고
    • A chemical approach to mapping nucleosomes at base pair resolution
    • Brogaard K, Xi L, Wang JP, et al. A chemical approach to mapping nucleosomes at base pair resolution. Meth Enzymol 2012;513: 315-34.
    • (2012) Meth Enzymol , vol.513 , pp. 315-334
    • Brogaard, K.1    Xi, L.2    Wang, J.P.3
  • 41
    • 0029928550 scopus 로고    scopus 로고
    • Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals
    • Flaus A, Luger K, Tan S, et al. Mapping nucleosome position at single base-pair resolution by using site-directed hydroxyl radicals. Proc Natl Acad Sci USA 1996;93: 1370-5.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 1370-1375
    • Flaus, A.1    Luger, K.2    Tan, S.3
  • 42
    • 84898022790 scopus 로고    scopus 로고
    • Ubiquitous nucleosome crowding in the yeast genome
    • Chereji RV, Morozov AV. Ubiquitous nucleosome crowding in the yeast genome. Proc Natl Acad Sci USA 2014;111: 5236-41.
    • (2014) Proc Natl Acad Sci USA , vol.111 , pp. 5236-5241
    • Chereji, R.V.1    Morozov, A.V.2
  • 43
    • 78650445679 scopus 로고    scopus 로고
    • Highthroughput sequencing reveals a simple model of nucleosome energetics
    • Locke G, Tolkunov D, Moqtaderi Z, et al. Highthroughput sequencing reveals a simple model of nucleosome energetics. Proc Natl Acad Sci USA 2010;107: 20998-1003.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 20998-21003
    • Locke, G.1    Tolkunov, D.2    Moqtaderi, Z.3
  • 44
    • 0026517738 scopus 로고
    • A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells
    • Widom J. A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells. Proc Natl Acad Sci USA 1992;89: 1095-9.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 1095-1099
    • Widom, J.1
  • 45
    • 52949092297 scopus 로고    scopus 로고
    • Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae
    • Wang JP, Fondufe-Mittendorf Y, Xi L, et al. Preferentially quantized linker DNA lengths in Saccharomyces cerevisiae. PLoS Comput Biol 2008;4: e1000175.
    • (2008) PLoS Comput Biol , vol.4 , pp. e1000175
    • Wang, J.P.1    Fondufe-mittendorf, Y.2    Xi, L.3
  • 46
    • 79961060579 scopus 로고    scopus 로고
    • Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions
    • Chereji RV, Tolkunov D, Locke G, et al. Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactions. Phys Rev E 2011;83: 050903.
    • (2011) Phys Rev E , vol.83 , pp. 050903
    • Chereji, R.V.1    Tolkunov, D.2    Locke, G.3
  • 47
    • 84901307314 scopus 로고    scopus 로고
    • A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress
    • Elfving N, Chereji RV, Bharatula V, et al. A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress. Nucleic Acids Res2014;42: 5468-82.
    • (2014) Nucleic Acids Res , vol.42 , pp. 5468-5482
    • Elfving, N.1    Chereji, R.V.2    Bharatula, V.3
  • 48
    • 84874764239 scopus 로고    scopus 로고
    • ISWI and CHD chromatin remodelers bind promoters but act in gene bodies
    • Zentner GE, Tsukiyama T, Henikoff S. ISWI and CHD chromatin remodelers bind promoters but act in gene bodies. PLoS Genet 2013;9: e1003317.
    • (2013) PLoS Genet , vol.9 , pp. e1003317
    • Zentner, G.E.1    Tsukiyama, T.2    Henikoff, S.3
  • 49
    • 0033637153 scopus 로고    scopus 로고
    • Genomic expression programs in the response of yeast cells to environmental changes
    • Gasch AP, Spellman PT, Kao CM, et al. Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 2000;11: 4241-57.
    • (2000) Mol Biol Cell , vol.11 , pp. 4241-4257
    • Gasch, A.P.1    Spellman, P.T.2    Kao, C.M.3
  • 50
    • 0029879360 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE)
    • Martinez-Pastor M, Marchler G, Schuller C, et al. The Saccharomyces cerevisiae zinc finger proteins Msn2p and Msn4p are required for transcriptional induction through the stress response element (STRE). EMBO J 1996;15: 2227-35.
    • (1996) EMBO J , vol.15 , pp. 2227-2235
    • Martinez-pastor, M.1    Marchler, G.2    Schuller, C.3
  • 51
    • 68149145742 scopus 로고    scopus 로고
    • Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae
    • Zawadzki KA, Morozov AV, Broach JR. Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae. Mol Biol Cell 2009;20: 3503-13.
    • (2009) Mol Biol Cell , vol.20 , pp. 3503-3513
    • Zawadzki, K.A.1    Morozov, A.V.2    Broach, J.R.3
  • 52
    • 79959264470 scopus 로고    scopus 로고
    • Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters
    • Tolkunov D, Zawadzki KA, Singer C, et al. Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters. Mol Biol Cell 2011;22: 2106-18.
    • (2011) Mol Biol Cell , vol.22 , pp. 2106-2118
    • Tolkunov, D.1    Zawadzki, K.A.2    Singer, C.3
  • 53
    • 74949110964 scopus 로고    scopus 로고
    • High-resolution nucleosome mapping reveals transcription-dependent promoter packaging
    • Weiner A, Hughes A, Yassour M, et al. High-resolution nucleosome mapping reveals transcription-dependent promoter packaging. Genome Res 2010;20: 90-100.
    • (2010) Genome Res , vol.20 , pp. 90-100
    • Weiner, A.1    Hughes, A.2    Yassour, M.3
  • 54
    • 84879583718 scopus 로고    scopus 로고
    • Noise and interlocking signaling pathways promote distinct transcription factor dynamics in response to different stresses
    • Petrenko N, Chereji RV, McClean MN, et al. Noise and interlocking signaling pathways promote distinct transcription factor dynamics in response to different stresses. Mol Biol Cell 2013;24: 2045-57.
    • (2013) Mol Biol Cell , vol.24 , pp. 2045-2057
    • Petrenko, N.1    Chereji, R.V.2    McClean, M.N.3
  • 55
    • 84907528092 scopus 로고    scopus 로고
    • RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast
    • gr.177014.114
    • Ganguli D, Chereji RV, Iben JR, et al. RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast. Genome Res 2014 gr.177014.114.
    • (2014) Genome Res
    • Ganguli, D.1    Chereji, R.V.2    Iben, J.R.3
  • 56
    • 0036786970 scopus 로고    scopus 로고
    • Spontaneous access of proteins to buried nucleosomal DNA target sites occurs via a mechanism that is distinct from nucleosome translocation
    • Anderson JD, Thåström A, Widom J. Spontaneous access of proteins to buried nucleosomal DNA target sites occurs via a mechanism that is distinct from nucleosome translocation. Mol Cell Biol 2002;22: 7147-57.
    • (2002) Mol Cell Biol , vol.22 , pp. 7147-7157
    • Anderson, J.D.1    Thåström, A.2    Widom, J.3
  • 57
    • 78049343481 scopus 로고    scopus 로고
    • A lattice model for transcription factor access to nucleosomal DNA
    • Teif VB, Ettig R, Rippe K. A lattice model for transcription factor access to nucleosomal DNA. Biophys J 2010;99: 2597-607.
    • (2010) Biophys J , vol.99 , pp. 2597-2607
    • Teif, V.B.1    Ettig, R.2    Rippe, K.3
  • 58
    • 0028872728 scopus 로고
    • Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative
    • Adams CC, Workman JL. Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative. Mol Cell Biol 1995;15: 1405-21.
    • (1995) Mol Cell Biol , vol.15 , pp. 1405-1421
    • Adams, C.C.1    Workman, J.L.2
  • 59
    • 0037369952 scopus 로고    scopus 로고
    • Collaborative competition mechanism for gene activation in vivo
    • Miller JA, Widom J. Collaborative competition mechanism for gene activation in vivo. Mol Cell Biol 2003;23: 1623-32.
    • (2003) Mol Cell Biol , vol.23 , pp. 1623-1632
    • Miller, J.A.1    Widom, J.2
  • 60
    • 80052962636 scopus 로고    scopus 로고
    • Structural constraints in collaborative competition of transcription factors against the nucleosome
    • Moyle-Heyrman G, Tims HS, Widom J. Structural constraints in collaborative competition of transcription factors against the nucleosome. J Mol Biol 2011;412: 634-46.
    • (2011) J Mol Biol , vol.412 , pp. 634-646
    • Moyle-heyrman, G.1    Tims, H.S.2    Widom, J.3
  • 61
    • 81255200353 scopus 로고    scopus 로고
    • Nonspecific transcription-factor-DNA binding influences nucleosome occupancy in yeast
    • Afek A, Sela I, Musa-Lempel N, et al. Nonspecific transcription-factor-DNA binding influences nucleosome occupancy in yeast. BiophysJ 2011;101: 2465-75.
    • (2011) BiophysJ , vol.101 , pp. 2465-2475
    • Afek, A.1    Sela, I.2    Musa-lempel, N.3
  • 62
    • 84874901264 scopus 로고    scopus 로고
    • Genome-wide organization of eukaryotic preinitiation complex is influenced by noncon-sensus protein-DNA binding
    • Afek A, Lukatsky DB. Genome-wide organization of eukaryotic preinitiation complex is influenced by noncon-sensus protein-DNA binding. BiophysJ 2013;104: 1107-15.
    • (2013) BiophysJ , vol.104 , pp. 1107-1115
    • Afek, A.1    Lukatsky, D.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.