Prevalence and molecular characterization of porcine enteric caliciviruses and first detection of porcine kobuviruses in US swine

Archives of Virology

Volumn 158, Issue 7, 2013, Pages 1583-1588

  Sisay, Zufan ^a,b   Wang, Qiuhong ^a   Oka, Tomoichiro ^a   Saif, Linda ^a  

^a OHIO STATE UNIVERSITY   (United States)

^b ADDIS ABABA UNIVERSITY   (Ethiopia)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

ANIMAL; ANIMAL DISEASE; ARTICLE; CALICIVIRUS; CALICIVIRUS INFECTION; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; DOMESTIC ANIMAL; FECES; GENETICS; ISOLATION AND PURIFICATION; KOBUVIRUS; PHYLOGENY; PICORNAVIRUS INFECTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SWINE; SWINE DISEASE; UNITED STATES; VIROLOGY;

ANIMALS; ANIMALS, DOMESTIC; CALICIVIRIDAE; CALICIVIRIDAE INFECTIONS; CLUSTER ANALYSIS; FECES; KOBUVIRUS; OHIO; PHYLOGENY; PICORNAVIRIDAE INFECTIONS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SWINE; SWINE DISEASES;

KOBUVIRUS; PICORNAVIRIDAE; SUIDAE; SUS;

EID: 84879695848     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-013-1619-5     Document Type: Article

References (32)

1. Zheng DP, Ando T, Fankhauser RL, Beard RS, Glass RI, Monroe SS (2006) Norovirus classification and proposed strain nomenclature. Virology 346(2): 312-323.
2. Farkas T, Zhong WM, Jing Y, Huang PW, Espinosa SM, Martinez N, Morrow AL, Ruiz-Palacios GM, Pickering LK, Jiang X (2004) Genetic diversity among sapoviruses. Arch Virol 149(7): 1309-1323.
3. Oka T, Mori K, Iritani N, Harada S, Ueki Y, Iizuka S, Mise K, Murakami K, Wakita T, Katayama K (2012) Human sapovirus classification based on complete capsid nucleotide sequences. Arch Virol 157(2): 349-352. doi: 10. 1007/s00705-011-1161-2.
4. Guo M, Chang KO, Hardy ME, Zhang Q, Parwani AV, Saif LJ (1999) Molecular characterization of a porcine enteric calicivirus genetically related to sapporo-like human caliciviruses. J Virol 73(11): 9625-9631.
5. Saif LJ, Bohl EH, Theil KW, Cross RF, House JA (1980) Rotavirus-like, calicivirus-like, and 23-nm virus-like particles associated with diarrhea in young pigs. J Clin Microbiol 12(1): 105-111.
6. Wang QH, Han MG, Funk JA, Bowman G, Janies DA, Saif LJ (2005) Genetic diversity and recombination of porcine sapoviruses. J Clin Microbiol 43(12): 5963-5972.
7. Yin Y, Tohya Y, Ogawa Y, Numazawa D, Kato K, Akashi H (2006) Genetic analysis of calicivirus genomes detected in intestinal contents of piglets in Japan. Arch Virol 151(9): 1749-1759.
8. Martella V, Lorusso E, Banyai K, Decaro N, Corrente M, Elia G, Cavalli A, Radogna A, Costantini V, Saif LJ, Lavazza A, Di Trani L, Buonavoglia C (2008) Identification of a porcine calicivirus related genetically to human sapoviruses. J Clin Microbiol 46(6): 1907-1913. doi: 10. 1128/JCM. 00341-08.
9. Reuter G, Zimsek-Mijovski J, Poljsak-Prijatelj M, Di Bartolo I, Ruggeri FM, Kantala T, Maunula L, Kiss I, Kecskemeti S, Halaihel N, Buesa J, Johnsen C, Hjulsager CK, Larsen LE, Koopmans M, Bottiger B (2010) Incidence, diversity, and molecular epidemiology of sapoviruses in swine across Europe. J Clin Microbiol 48(2): 363-368. doi: 10. 1128/JCM. 01279-09.
10. Nakamura K, Saga Y, Iwai M, Obara M, Horimoto E, Hasegawa S, Kurata T, Okumura H, Nagoshi M, Takizawa T (2010) Frequent detection of noroviruses and sapoviruses in swine and high genetic diversity of porcine sapovirus in Japan during fiscal year 2008. J Clin Microbiol 48(4): 1215-1222. doi: 10. 1128/JCM. 02130-09.
11. Dos Anjos K, Lima LM, Silva PA, Inoue-Nagata AK, Nagata T (2011) The possible molecular evolution of sapoviruses by inter- and intra-genogroup recombination. Arch Virol 156(11): 1953-1959. doi: 10. 1007/s00705-011-1079-8.
12. Kim HJ, Cho HS, Cho KO, Park NY (2006) Detection and molecular characterization of porcine enteric calicivirus in Korea, genetically related to sapoviruses. J Vet Med B Infect Dis Vet Public Health 53(4): 155-159.
13. Song YJ, Yu JN, Nam HM, Bak HR, Lee JB, Park SY, Song CS, Seo KH, Choi IS (2011) Identification of genetic diversity of porcine norovirus and sapovirus in Korea. Virus Genes 42(3): 394-401. doi: 10. 1007/s11262-011-0588-6.
14. L'Homme Y, Brassard J, Ouardani M, Gagne MJ (2010) Characterization of novel porcine sapoviruses. Arch Virol 155(6): 839-846. doi: 10. 1007/s00705-010-0651-y.
15. Wang QH, Souza M, Funk JA, Zhang W, Saif LJ (2006) Prevalence of noroviruses and sapoviruses in swine of various ages determined by reverse transcription-PCR and microwell hybridization assays. J Clin Microbiol 44(6): 2057-2062.
16. Dufkova L, Scigalkova I, Moutelikova R, Malenovska H, Prodelalova J (2012) Genetic diversity of porcine sapoviruses, kobuviruses, and astroviruses in asymptomatic pigs: an emerging new sapovirus GIII genotype. Arch Virol. doi: 10. 1007/s00705-012-1528-z.
17. Meng XJ (2012) Emerging and re-emerging swine viruses. Transboundary Emerg Dis 59(suppl 1): 85-102. doi: 10. 1111/j. 1865-1682. 2011. 01291. x.
18. Yamashita T, Kobayashi S, Sakae K, Nakata S, Chiba S, Ishihara Y, Isomura S (1991) Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J Infect Dis 164(5): 954-957.
19. Yamashita T, Ito M, Kabashima Y, Tsuzuki H, Fujiura A, Sakae K (2003) Isolation and characterization of a new species of kobuvirus associated with cattle. J Gen Virol 84(Pt 11): 3069-3077.
20. Reuter G, Boldizsar A, Pankovics P (2009) Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch Virol 154(1): 101-108. doi: 10. 1007/s00705-008-0288-2.
21. Reuter G, Boldizsar A, Kiss I, Pankovics P (2008) Candidate new species of kobuvirus in porcine hosts. Emerg Infect Dis 14(12): 1968-1970. doi: 10. 3201/eid1412. 080797.
22. Park SJ, Kim HK, Moon HJ, Song DS, Rho SM, Han JY, Nguyen VG, Park BK (2010) Molecular detection of porcine kobuviruses in pigs in Korea and their association with diarrhea. Arch Virol 155(11): 1803-1811. doi: 10. 1007/s00705-010-0774-1.
23. Wang QH, Chang KO, Han MG, Sreevatsan S, Saif LJ (2006) Development of a new microwell hybridization assay and an internal control RNA for the detection of porcine noroviruses and sapoviruses by reverse transcription-PCR. J Virol Methods 132(1-2): 135-145.
24. Wang QH, Han MG, Cheetham S, Souza M, Funk JA, Saif LJ (2005) Porcine noroviruses related to human noroviruses. Emerg Infect Dis 11(12): 1874-1881.
25. Jiang X, Huang PW, Zhong WM, Farkas T, Cubitt DW, Matson DO (1999) Design and evaluation of a primer pair that detects both norwalk- and sapporo-like caliciviruses by RT-PCR. J Virol Methods 83(1-2): 145-154.
26. Le Guyader F, Estes MK, Hardy ME, Neill FH, Green J, Brown DW, Atmar RL (1996) Evaluation of a degenerate primer for the PCR detection of human caliciviruses. Arch Virol 141(11): 2225-2235.
27. Vennema H, de Bruin E, Koopmans M (2002) Rational optimization of generic primers used for norwalk-like virus detection by reverse transcriptase polymerase chain reaction. J Clin Virol 25(2): 233-235.
28. Amimo JO, Vlasova AN, Saif LJ (2013) Detection and genetic diversity of porcine group A rotaviruses in historic (2004) and recent (2011/12) swine fecal samples in Ohio, USA: Predominance of G9P[13] genotype in nursing piglets (accepted).
29. Yu JM, Jin M, Zhang Q, Li HY, Li DD, Xu ZQ, Li JS, Cui SX, Yang SH, Liu N, Duan ZJ (2009) Candidate porcine kobuvirus, China. Emerg Infect Dis 15(5): 823-825. doi: 10. 3201/eid1505. 081518.
30. Khamrin P, Maneekarn N, Kongkaew A, Kongkaew S, Okitsu S, Ushijima H (2009) Porcine kobuvirus in piglets, Thailand. Emerg Infect Dis 15(12): 2075-2076. doi: 10. 3201/eid1512. 090724.
31. Khamrin P, Maneekarn N, Hidaka S, Kishikawa S, Ushijima K, Okitsu S, Ushijima H (2010) Molecular detection of kobuvirus sequences in stool samples collected from healthy pigs in Japan. Infection, genetics and evolution. J Mol Epidemiol Evol Genet Infect Dis 10(7): 950-954. doi: 10. 1016/j. meegid. 2010. 06. 001.
32. Okada M, Yamashita Y, Oseto M, Shinozaki K (2006) The detection of human sapoviruses with universal and genogroup-specific primers. Arch Virol 151(12): 2503-2509. doi: 10. 1007/s00705-006-0820-1.