Viruses in diarrhoeic dogs include novel kobuviruses and sapoviruses

Journal of General Virology

Volumn 92, Issue 11, 2011, Pages 2534-2541

  Li, Linlin ^a,b   Pesavento, Patricia A ^c   Shan, Tongling ^a,d   Leutenegger, Christian M ^e   Wang, Chunlin ^f   Delwart, Eric ^a,b  

^a BLOOD SYSTEMS RESEARCH INSTITUTE   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d SHANGHAI JIAO TONG UNIVERSITY   (China)

^e IDEXX LABORATORIES   (United States)

^f STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CORONAVIRUS; DIARRHEA; DOG; GENE SEQUENCE; KOBUVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PARVOVIRUS; PICORNAVIRUS; PRIORITY JOURNAL; ROTAVIRUS; SAPOVIRUS; VIRUS CAPSID; VIRUS DETECTION; VIRUS GENOME;

ANIMALS; CALICIVIRIDAE INFECTIONS; DIARRHEA; DOG DISEASES; DOGS; FECES; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; KOBUVIRUS; MOLECULAR SEQUENCE DATA; PICORNAVIRIDAE INFECTIONS; SAPOVIRUS; SEQUENCE ANALYSIS, DNA;

AICHI VIRUS; ANIMALIA; CANIS FAMILIARIS; EUKARYOTA; KOBUVIRUS; MIRIDAE; PARVOVIRUS; PICORNAVIRIDAE; ROTAVIRUS; SAPOVIRUS;

EID: 80053990304     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.034611-0     Document Type: Article

References (53)

1. Allander, T., Emerson, S. U., Engle, R. E., Purcell, R. H. & Bukh, J. (2001). A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc Natl Acad Sci U S A 98, 11609-11614.
2. Barry, A. F., Alfieri, A. F. & Alfieri, A. A. (2008). High genetic diversity in RdRp gene of Brazilian porcine sapovirus strains. Vet Microbiol 131, 185-191.
3. Buonavoglia, C. & Martella, V. (2007). Canine respiratory viruses. Vet Res 38, 355-373.
4. Chevreux, B. (2005). MIRA: an automated genome and EST assembler. PhD thesis, Ruprecht-Karls University, Heidelberg, Germany.
5. Chiba, S., Sakuma, Y., Kogasaka, R., Akihara, M., Horino, K., Nakao, T. & Fukui, S. (1979). An outbreak of gastroenteritis associated with calicivirus in an infant home. J Med Virol 4, 249-254.
6. Cook, G. C. (1989). Canine-associated zoonoses: an unacceptable hazard to human health. Q J Med 70, 5-26.
7. Coppinger, R. & Coppinger, L. (2001). Dogs: a Startling New Understanding of Canine Origin, Behavior & Evolution. New York: Scribner.
8. Decaro, N. & Buonavoglia, C. (2008). An update on canine coronaviruses: viral evolution and pathobiology. Vet Microbiol 132, 221-234.
9. Decaro, N., Martella, V. & Buonavoglia, C. (2008). Canine adenoviruses and herpesvirus. Vet Clin North Am Small Anim Pract 38, 799-814, viii.
10. Decaro, N., Mari, V., Campolo, M., Lorusso, A., Camero, M., Elia, G., Martella, V., Cordioli, P., Enjuanes, L. & Buonavoglia, C. (2009). Recombinant canine coronaviruses related to transmissible gastroenteritis virus of swine are circulating in dogs. J Virol 83, 1532-1537.
11. Decaro, N., Mari, V., Elia, G., Addie, D. D., Camero, M., Lucente, M. S., Martella, V. & Buonavoglia, C. (2010). Recombinant canine coronaviruses in dogs, Europe. Emerg Infect Dis 16, 41-47.
12. De Grazia, S., Martella, V., Giammanco, G. M., Gómara, M. I., Ramirez, S., Cascio, A., Colomba, C. & Arista, S. (2007). Canineorigin G3P[3] rotavirus strain in child with acute gastroenteritis. Emerg Infect Dis 13, 1091-1093.
13. Dubovi, E. J. & Njaa, B. L. (2008). Canine influenza. Vet Clin North Am Small Anim Pract 38, 827-835, viii.
14. Erles, K. & Brownlie, J. (2008). Canine respiratory coronavirus: an emerging pathogen in the canine infectious respiratory disease complex. Vet Clin North Am Small Anim Pract 38, 815-825, viii.
15. Farkas, T., Zhong, W. M., Jing, Y., Huang, P. W., Espinosa, S. M., Martinez, N., Morrow, A. L., Ruiz-Palacios, G. M., Pickering, L. K. & Jiang, X. (2004). Genetic diversity among sapoviruses. Arch Virol 149, 1309-1323.
16. Greninger, A. L., Runckel, C., Chiu, C. Y., Haggerty, T., Parsonnet, J., Ganem, D. & DeRisi, J. L. (2009). The complete genome of klassevirus -a novel picornavirus in pediatric stool. Virol J 6, 82.
17. Griot, C., Vandevelde, M., Schobesberger, M. & Zurbriggen, A. (2003). Canine distemper, a re-emerging morbillivirus with complex neuropathogenic mechanisms. Anim Health Res Rev 4, 1-10.
18. Guo, M., Evermann, J. F. & Saif, L. J. (2001). Detection and molecular characterization of cultivable caliciviruses from clinically normal mink and enteric caliciviruses associated with diarrhea in mink. Arch Virol 146, 479-493.
19. Hansman, G. S., Oka, T., Katayama, K. & Takeda, N. (2007). Human sapoviruses: genetic diversity, recombination, and classification. Rev Med Virol 17, 133-141.
20. Holtz, L. R., Finkbeiner, S. R., Zhao, G., Kirkwood, C. D., Girones, R., Pipas, J. M. & Wang, D. (2009). Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread. Virol J 6, 86.
21. Kapoor, A., Simmonds, P., Gerold, G., Qaisar, N., Jain, K., Henriquez, J. A., Firth, C., Hirschberg, D. L., Rice, C. M. & other authors (2011). Characterization of a canine homolog of hepatitis C virus. Proc Natl Acad Sci U S A 108, 11608-11613.
22. Koopmans, M. K., Green, K. Y., Ando, T., Clarke, I. N., Estes, M. K., Matson, D. O., Nakata, S., Neill, J. D. & Thiel, H.-J. (2005). Caliciviridae. In Virus Taxonomy: Eighth Report of the International Committee on Taxonomy of Viruses, pp. 843-851. Edited by C. Fauquet, M. Mayo, J. Maniloff, U. Desselberger & L. Ball. San Diego: Academic Press.
23. Kumar, S., Nei, M., Dudley, J. & Tamura, K. (2008). MEGA: a biologistcentric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform 9, 299-306.
24. Lackay, S. N., Kuang, Y. & Fu, Z. F. (2008). Rabies in small animals. Vet Clin North Am Small Anim Pract 38, 851-861, ix.
25. L'Homme, Y., Sansregret, R., Plante-Fortier, E., Lamontagne, A. M., Lacroix, G., Ouardani, M., Deschamps, J., Simard, G. & Simard, C. (2009). Genetic diversity of porcine Norovirus and Sapovirus: Canada, 2005-2007. Arch Virol 154, 581-593.
26. Li, L., Victoria, J., Kapoor, A., Blinkova, O., Wang, C., Babrzadeh, F., Mason, C. J., Pandey, P., Triki, H. & other authors (2009). A novel picornavirus associated with gastroenteritis. J Virol 83, 12002-12006.
27. Li, L., Victoria, J. G., Wang, C., Jones, M., Fellers, G. M., Kunz, T. H. & Delwart, E. (2010). Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses. J Virol 84, 6955-6965.
28. Martella, V., Decaro, N., Elia, G. & Buonavoglia, C. (2005). Surveillance activity for canine parvovirus in Italy. J Vet Med B Infect Dis Vet Public Health 52, 312-315.
29. Martella, V., Elia, G. & Buonavoglia, C. (2008). Canine distemper virus. Vet Clin North Am Small Anim Pract 38, 787-797, vii-viii.
30. Martella, V., Lorusso, E., Banyai, K., Decaro, N., Corrente, M., Elia, G., Cavalli, A., Radogna, A., Costantini, V. & other authors (2008). Identification of a porcine calicivirus related genetically to human sapoviruses. J Clin Microbiol 46, 1907-1913.
31. Martella, V., Bányai, K., Lorusso, E., Bellacicco, A. L., Decaro, N., Mari, V., Saif, L., Costantini, V., De Grazia, S. & other authors (2008). Genetic heterogeneity of porcine enteric caliciviruses identified from diarrhoeic piglets. Virus Genes 36, 365-373.
32. Martella, V., Bianchi, A., Bertoletti, I., Pedrotti, L., Gugiatti, A., Catella, A., Cordioli, P., Lucente, M. S., Elia, G. & Buonavoglia, C. (2010). Canine distemper epizootic among red foxes, Italy, 2009. Emerg Infect Dis 16, 2007-2009.
33. Nakamura, K., Saga, Y., Iwai, M., Obara, M., Horimoto, E., Hasegawa, S., Kurata, T., Okumura, H., Nagoshi, M. & Takizawa, T. (2010). Frequent detection of noroviruses and sapoviruses in swine and high genetic diversity of porcine sapovirus in Japan during Fiscal Year 2008. J Clin Microbiol 48, 1215-1222.
34. Nicholls, P. K. & Stanley, M. A. (1999). Canine papillomavirus -a centenary review. J Comp Pathol 120, 219-233.
35. Okada, M., Yamashita, Y., Oseto, M., Ogawa, T., Kaiho, I. & Shinozaki, K. (2006). Genetic variability in the sapovirus capsid protein. Virus Genes 33, 157-161.
36. Parrish, C. R. (1999). Host range relationships and the evolution of canine parvovirus. Vet Microbiol 69, 29-40.
37. Parrish, C. R. & Kawaoka, Y. (2005). The origins of new pandemic viruses: the acquisition of new host ranges by canine parvovirus and influenza A viruses. Annu Rev Microbiol 59, 553-586.
38. Pollock, R. V. & Coyne, M. J. (1993). Canine parvovirus. Vet Clin North Am Small Anim Pract 23, 555-568.
39. Pratelli, A. (2006). Genetic evolution of canine coronavirus and recent advances in prophylaxis. Vet Res 37, 191-200.
40. Renshaw, R. W., Zylich, N. C., Laverack, M. A., Glaser, A. L. & Dubovi, E. J. (2010). Pneumovirus in dogs with acute respiratory disease. Emerg Infect Dis 16, 993-995.
41. Reuter, G., Boldizsár, A. & Pankovics, P. (2009). Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch Virol 154, 101-108.
42. Reuter, G., Boros, A., Pankovics, P. & Egyed, L. (2010). Kobuvirus in domestic sheep, Hungary. Emerg Infect Dis 16, 869-870.
43. Smiley, J. R., Chang, K. O., Hayes, J., Vinjé, J. & Saif, L. J. (2002). Characterization of an enteropathogenic bovine calicivirus representing a potentially new calicivirus genus. J Virol 76, 10089-10098.
44. Truyen, U. (1999). Emergence and recent evolution of canine parvovirus. Vet Microbiol 69, 47-50.
45. Tsugawa, T. & Hoshino, Y. (2008). Whole genome sequence and phylogenetic analyses reveal human rotavirus G3P[3] strains Ro1845 and HCR3A are examples of direct virion transmission of canine/ feline rotaviruses to humans. Virology 380, 344-353.
46. Usuku, S., Kumazaki, M., Kitamura, K., Tochikubo, O. & Noguchi, Y. (2008). An outbreak of food-borne gastroenteritis due to sapovirus among junior high school students. Jpn J Infect Dis 61, 438-441.
47. Victoria, J. G., Kapoor, A., Li, L., Blinkova, O., Slikas, B., Wang, C., Naeem, A., Zaidi, S. & Delwart, E. (2009). Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J Virol 83, 4642-4651.
48. Willis, A. M. (2000). Canine viral infections. Vet Clin North Am Small Anim Pract 30, 1119-1133.
49. Wright, N. G. (1973). Recent advances in canine virus research. J Small Anim Pract 14, 241-250.
50. Yamashita, T., Sakae, K., Tsuzuki, H., Suzuki, Y., Ishikawa, N., Takeda, N., Miyamura, T. & Yamazaki, S. (1998). Complete nucleotide sequence and genetic organization of Aichi virus, a distinct member of the Picornaviridae associated with acute gastroenteritis in humans. J Virol 72, 8408-8412.
51. Yamashita, T., Ito, M., Kabashima, Y., Tsuzuki, H., Fujiura, A. & Sakae, K. (2003). Isolation and characterization of a new species of kobuvirus associated with cattle. J Gen Virol 84, 3069-3077.
52. Yang, S., Zhang, W., Shen, Q., Huang, F., Wang, Y., Zhu, J., Cui, L., Yang, Z. & Hua, X. (2009). Molecular characterization and phylogenetic analysis of the complete genome of a porcine sapovirus from Chinese swine. Virol J 6, 216.
53. Yu, J.-M., Jin, M., Zhang, Q., Li, H.-Y., Li, D.-D., Xu, Z.-Q., Li, J.-S., Cui, S.-X., Yang, S.-H. & other authors (2009). Candidate porcine Kobuvirus, China. Emerg Infect Dis 15, 823-825.