Molecular detection and genetic characterization of kobuviruses in fecal samples collected from diarrheic cattle in Korea

Infection, Genetics and Evolution

Volumn 11, Issue 5, 2011, Pages 1178-1182

  Park, Seong Jun ^a   Kim, Hye Kwon ^a   Song, Dae Sub ^b   Moon, Hyoung Joon ^c   Park, Bong Kyun ^a  

^a Seoul National University   (South Korea)

^b Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

^c Green Cross Company   (South Korea)

Author keywords

Cattle; Evolution; Interspecies transmission; Kobuvirus; Korea; Pig

Indexed keywords

VIRUS RNA;

ARTICLE; CATTLE FARMING; CONTROLLED STUDY; COW; DIARRHEA; ENDEMIC DISEASE; FECES CULTURE; GENETIC VARIABILITY; KOBUVIRUS; KOBUVIRUS INFECTION; MOLECULAR CLONING; MOLECULAR EVOLUTION; MOLECULAR PHYLOGENY; MOST RECENT COMMON ANCESTOR; MUTATION RATE; NONHUMAN; NUCLEOTIDE SEQUENCE; ORGANISMS BY PHYLOGENETIC POSITION; PICORNAVIRUS INFECTION; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SOUTH KOREA; VIRUS IDENTIFICATION; VIRUS MUTATION; VIRUS STRAIN; VIRUS TRANSMISSION;

ANIMALS; CATTLE; CATTLE DISEASES; DIARRHEA; FECES; KOBUVIRUS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PICORNAVIRIDAE INFECTIONS; REPUBLIC OF KOREA;

ANIMALIA; BOS; BOVINAE; BOVINE KOBUVIRUS; KOBUVIRUS; PICORNAVIRIDAE; SUIDAE; SUS;

EID: 79956314111     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2011.02.019     Document Type: Article

References (21)

1. Drummond A.J., Rambaut A. BEAST: bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 8:214.
2. Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
3. Huelsenbeck J.P., Ronquist F. MRBAYES: bayesian inference of phylogenetic trees. Bioinformatics 2001, 17:754-755.
4. Khamrin P., Maneekarn N., Peerakome S., Okitsu S., Mizuguchi M., Ushijama H. Bovine kobuviruses from cattle with diarrhea. Emerg. Infect. Dis. 2008, 14:985-986.
5. Khamrin P., Maneekarn N., Hidaka S., Kishikawa S., Ushijima K., Okitsu S., Ushijima H. Molecular detection of kobuvirus sequences in stool samples collected from healthy pigs in Japan. Infect. Genet. Evol. 2010, 10:950-954.
6. Li L., Victoria J.G., Wang C., Jones M., Fellers G.M., Kunz T.H., Delwart E. Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses. J. Virol. 2010, 84:6955-6965.
7. Lukashev A.N. Recombination among picornaviruses. Rev. Med. Virol. 2010, 20:327-337.
8. Mauroy A., Scipioni A., Mathijs E., Thys C., Thiry E. Molecular detection of kobuviruses and recombinant noroviruses in cattle in continental Europe. Arch. Virol. 2009, 154:1841-1845.
9. Park S.J., Song D.S., Ha G.W., Park B.K. Cloning and further sequence analysis of the spike gene of attenuated porcine epidemic diarrhea virus DR13. Virus Genes 2007, 35:55-64.
10. Posada D. jModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
11. Reuter G., Egyed L. Bovine kobuvirus in Europe. Emerg. Infect. Dis. 2009, 15:822-823.
12. Reuter G., Boldizsár A., Kiss I., Pankovics P. Candidate new species of Kobuvirus in porcine hosts. Emerg. Infect. Dis. 2008, 14:1968-1970.
13. Reuter G., Boldizsár A., Pankovics P. Complete nucleotide and amino acid sequences and genetic organization of porcine kobuvirus, a member of a new species in the genus Kobuvirus, family Picornaviridae. Arch. Virol. 2009, 154:101-108.
14. Reuter G., Boros A., Pankovics P., Egyed L. Kobuvirus in domestic sheep. Hungary Emerg. Infect. Dis. 2010, 16:869-870.
15. Reuter G., Kecskeméti S., Pankovics P. Evolution of porcine Kobuvirus infection. Hungary Emerg. Infect. Dis. 2010, 16:696-698.
16. Suchard M.A., Weiss R.E., Sinsheimer J.S. Bayesian selection of continuous-time Markov chain evolutionary models. Mol. Biol. Evol. 2001, 18:1001-1013.
17. Tamura K., Nei M. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 1993, 10:512-526.
18. Tang P., Chiu C. Metagenomics for the discovery of novel human viruses. Future Microbiol. 2010, 5:177-189.
19. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
20. Yamashita T., Kobayashi S., Sakae K., Nakata S., Chiba S., Ishihara Y., Isomura S. Isolation of cytopathic small round viruses with BS-C-1 cells from patients with gastroenteritis. J. Infect. Dis. 1991, 164:954-957.
21. Yamashita T., Ito M., Kabashima Y., Tsuzuki H., Fujiura A., Sakae K. Isolation and characterization of a new species of kobuvirus associated with cattle. J. Gen. Virol. 2003, 84:3069-3077.