메뉴 건너뛰기




Volumn 79, Issue 1, 2005, Pages 649-654

Evolutionary spread and recombination of porcine endogenous retroviruses in the Suiformes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; ENVELOPE GENE; HOLOCENE; LONG TERMINAL REPEAT; MOSAICISM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLIOCENE; PRIORITY JOURNAL; RETROVIRUS; RNA RECOMBINATION; SPECIES; SWINE;

EID: 10644261240     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/JVI.79.1.649-654.2005     Document Type: Article
Times cited : (39)

References (50)
  • 1
    • 0031969441 scopus 로고    scopus 로고
    • Identification of a full-length cDNA for an endogenous retrovirus of miniature swine
    • Akiyoshi, D. E., M. Denaro, H. Zhu, J. L. Greenstein, P. Banerjee, and J. A. Fishman. 1998. Identification of a full-length cDNA for an endogenous retrovirus of miniature swine. J. Virol. 72:4503-4507.
    • (1998) J. Virol. , vol.72 , pp. 4503-4507
    • Akiyoshi, D.E.1    Denaro, M.2    Zhu, H.3    Greenstein, J.L.4    Banerjee, P.5    Fishman, J.A.6
  • 4
    • 0002075936 scopus 로고    scopus 로고
    • Retrotransposons, endogenous retroviruses and the evolution of retroelements
    • J. M. Coffin, S. H. Hughes, and H. E. Varmus (ed.), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y.
    • Boeke, J. D., and J. P. Stoye. 1997. Retrotransposons, endogenous retroviruses and the evolution of retroelements, p. 343-436. In J. M. Coffin, S. H. Hughes, and H. E. Varmus (ed.), Retroviruses, vol. 16. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N. Y.
    • (1997) Retroviruses , vol.16 , pp. 343-436
    • Boeke, J.D.1    Stoye, J.P.2
  • 5
    • 0023710380 scopus 로고
    • Fv-1 N- and B-tropism-specific sequences in murine leukemia virus and related endogenous proviral genomes
    • Boone, L. R., P. L. Glover, C. L. Innes, L. A. Niver, M. C. Bondurant, and W. K. Yang. 1988. Fv-1 N- and B-tropism-specific sequences in murine leukemia virus and related endogenous proviral genomes. J. Virol. 62:2644-2650.
    • (1988) J. Virol. , vol.62 , pp. 2644-2650
    • Boone, L.R.1    Glover, P.L.2    Innes, C.L.3    Niver, L.A.4    Bondurant, M.C.5    Yang, W.K.6
  • 6
    • 0035047142 scopus 로고    scopus 로고
    • Sequences in the cytoplasmic tail of the gibbon ape leukemia virus envelope protein that prevent its incorporation into lentivirus vectors
    • Christodoulopoulos, I., and P. M. Cannon. 2001. Sequences in the cytoplasmic tail of the gibbon ape leukemia virus envelope protein that prevent its incorporation into lentivirus vectors. J. Virol. 75:4129-4138.
    • (2001) J. Virol. , vol.75 , pp. 4129-4138
    • Christodoulopoulos, I.1    Cannon, P.M.2
  • 7
    • 0034000469 scopus 로고    scopus 로고
    • Establishment and characterization of molecular clones of porcine endogenous retroviruses replicating on human cells
    • Czauderna, F., N. Fischer, K. Boller, R. Kurth, and R. R. Tönjes. 2000. Establishment and characterization of molecular clones of porcine endogenous retroviruses replicating on human cells. J. Virol. 74:4028-4038.
    • (2000) J. Virol. , vol.74 , pp. 4028-4038
    • Czauderna, F.1    Fischer, N.2    Boller, K.3    Kurth, R.4    Tönjes, R.R.5
  • 8
    • 0028793178 scopus 로고
    • Molecular evolution of the mitochondrial 12S rRNA in Ungulata (mammalia)
    • Douzery, E., and F. M. Catzeflis. 1995. Molecular evolution of the mitochondrial 12S rRNA in Ungulata (mammalia). J. Mol. Evol. 41:622-636.
    • (1995) J. Mol. Evol. , vol.41 , pp. 622-636
    • Douzery, E.1    Catzeflis, F.M.2
  • 9
    • 0032826401 scopus 로고    scopus 로고
    • Detecting and characterizing gene conversions between multigene family members
    • Drouin, G., F. Prat, M. Ell, and G. D. Clarke. 1999. Detecting and characterizing gene conversions between multigene family members. Mol. Biol. Evol. 16:1369-1390.
    • (1999) Mol. Biol. Evol. , vol.16 , pp. 1369-1390
    • Drouin, G.1    Prat, F.2    Ell, M.3    Clarke, G.D.4
  • 10
    • 0024335586 scopus 로고
    • Genetic identification of endogenous polytropic proviruses by using recombinant inbred mice
    • Frankel, W. N., J. P. Stoye, B. A. Taylor, and J. M. Coffin. 1989. Genetic identification of endogenous polytropic proviruses by using recombinant inbred mice. J. Virol. 63:3810-3821.
    • (1989) J. Virol. , vol.63 , pp. 3810-3821
    • Frankel, W.N.1    Stoye, J.P.2    Taylor, B.A.3    Coffin, J.M.4
  • 11
    • 0002045681 scopus 로고    scopus 로고
    • New morphological evidence for the phylogeny of Artiodactyla, Cetacea, and Mesonychidae
    • Geisler, J. H. 2001. New morphological evidence for the phylogeny of Artiodactyla, Cetacea, and Mesonychidae. Am. Mus. Novit. 344:1-53.
    • (2001) Am. Mus. Novit. , vol.344 , pp. 1-53
    • Geisler, J.H.1
  • 13
    • 0033529321 scopus 로고    scopus 로고
    • Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus
    • Gibbs, M. J., and G. F. Weiller. 1999. Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus. Proc. Natl. Acad. Sci. USA 96:8022-8027.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 8022-8027
    • Gibbs, M.J.1    Weiller, G.F.2
  • 15
    • 0025764044 scopus 로고
    • Evolution of the cytochrome b gene of mammals
    • Irwin, D. M., T. D. Kocher, and A. C. Wilson. 1991. Evolution of the cytochrome b gene of mammals. J. Mol. Evol. 32:128-144.
    • (1991) J. Mol. Evol. , vol.32 , pp. 128-144
    • Irwin, D.M.1    Kocher, T.D.2    Wilson, A.C.3
  • 16
    • 0030952367 scopus 로고    scopus 로고
    • Functional analysis of the cytoplasmic tail of Moloney murine leukemia virus envelope protein
    • Januszeski, M. M., P. M. Cannon, D. Chen, Y. Rozenberg, and W. F. Anderson. 1997. Functional analysis of the cytoplasmic tail of Moloney murine leukemia virus envelope protein. J. Virol. 71:3613-3619.
    • (1997) J. Virol. , vol.71 , pp. 3613-3619
    • Januszeski, M.M.1    Cannon, P.M.2    Chen, D.3    Rozenberg, Y.4    Anderson, W.F.5
  • 17
    • 0033621090 scopus 로고    scopus 로고
    • Constructing primate phylogenies from ancient retrovirus sequences
    • Johnson, W. E., and J. M. Coffin. 1999. Constructing primate phylogenies from ancient retrovirus sequences. Proc. Natl. Acad. Sci. USA 96:10254-10260.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 10254-10260
    • Johnson, W.E.1    Coffin, J.M.2
  • 18
    • 0032694708 scopus 로고    scopus 로고
    • Phylogenetic analysis of HERV-K LTR-like elements in primates: Presence in some new world monkeys and evidence of recent parallel evolution in these species and in Homo sapiens
    • Kim, H. S., R. V. Wadekar, O. Tatenaka, B.-H. Hyun, and T. J. Crow. 1999. Phylogenetic analysis of HERV-K LTR-like elements in primates: presence in some new world monkeys and evidence of recent parallel evolution in these species and in Homo sapiens. Arch. Virol. 144:2035-2040.
    • (1999) Arch. Virol. , vol.144 , pp. 2035-2040
    • Kim, H.S.1    Wadekar, R.V.2    Tatenaka, O.3    Hyun, B.-H.4    Crow, T.J.5
  • 19
    • 0036171461 scopus 로고    scopus 로고
    • Phylogenetic relationships of Asian and European pig breeds determined by mitochondrial DNA D-loop sequence polymorphism
    • Kim, K. I., J. H. Lee, K. Li, Y. P. Zhang, S. S. Lee, J. Gongora, and C. Moran. 2002. Phylogenetic relationships of Asian and European pig breeds determined by mitochondrial DNA D-loop sequence polymorphism. Anim. Genet. 33:19-25.
    • (2002) Anim. Genet. , vol.33 , pp. 19-25
    • Kim, K.I.1    Lee, J.H.2    Li, K.3    Zhang, Y.P.4    Lee, S.S.5    Gongora, J.6    Moran, C.7
  • 20
    • 0141841835 scopus 로고    scopus 로고
    • Recombination analysis of human-tropic porcine endogenous retroviruses
    • Klymiuk, N., M. Muller, G. Brem, and B. Aigner. 2003. Recombination analysis of human-tropic porcine endogenous retroviruses. J. Gen. Virol. 84:2729-2734.
    • (2003) J. Gen. Virol. , vol.84 , pp. 2729-2734
    • Klymiuk, N.1    Muller, M.2    Brem, G.3    Aigner, B.4
  • 21
    • 0035017898 scopus 로고    scopus 로고
    • Comparison of replication-competent molecular clones of porcine endogenous retrovirus class A and class B derived from pig and human cells
    • Krach, U., N. Fischer, F. Czauderna, and R. R. Tonjes. 2001. Comparison of replication-competent molecular clones of porcine endogenous retrovirus class A and class B derived from pig and human cells. J. Virol. 75:5465-5472.
    • (2001) J. Virol. , vol.75 , pp. 5465-5472
    • Krach, U.1    Fischer, N.2    Czauderna, F.3    Tonjes, R.R.4
  • 22
    • 0026602984 scopus 로고
    • RNA recombination in animal and plant viruses
    • Lai, M. M. 1992. RNA recombination in animal and plant viruses. Microbiol. Rev. 56:61-79.
    • (1992) Microbiol. Rev. , vol.56 , pp. 61-79
    • Lai, M.M.1
  • 24
    • 0030969833 scopus 로고    scopus 로고
    • Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA mitochondrial sequences
    • Montgelard, C., F. M. Catzeflis, and E. Douzery. 1997. Phylogenetic relationships of artiodactyls and cetaceans as deduced from the comparison of cytochrome b and 12S rRNA mitochondrial sequences. Mol. Biol. Evol. 14:550-559.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 550-559
    • Montgelard, C.1    Catzeflis, F.M.2    Douzery, E.3
  • 25
    • 0030759896 scopus 로고    scopus 로고
    • New insights into the mechanisms of RNA recombination
    • Nagy, P. D., and A. E. Simon. 1997. New insights into the mechanisms of RNA recombination. Virology 235:1-9.
    • (1997) Virology , vol.235 , pp. 1-9
    • Nagy, P.D.1    Simon, A.E.2
  • 26
    • 0036190873 scopus 로고    scopus 로고
    • Characterization of chromosomally assigned replication-competent gamma porcine endogenous retroviruses derived from a large white pig and expression in human cells
    • Niebert, M., C. Rogel-Gaillard, P. Chardon, and R. R. Tönjes. 2002. Characterization of chromosomally assigned replication-competent gamma porcine endogenous retroviruses derived from a large white pig and expression in human cells. J. Virol. 76:2714-2720.
    • (2002) J. Virol. , vol.76 , pp. 2714-2720
    • Niebert, M.1    Rogel-Gaillard, C.2    Chardon, P.3    Tönjes, R.R.4
  • 27
    • 0041885521 scopus 로고    scopus 로고
    • Analyses of prevalence and polymorphisms of six replication-competent and chromosomally assigned porcine endogenous retroviruses in individual pigs and pig subspecies
    • Niebert, M., and R. R. Tönjes. 2003. Analyses of prevalence and polymorphisms of six replication-competent and chromosomally assigned porcine endogenous retroviruses in individual pigs and pig subspecies. Virology 313:427-434.
    • (2003) Virology , vol.313 , pp. 427-434
    • Niebert, M.1    Tönjes, R.R.2
  • 29
    • 0031054438 scopus 로고    scopus 로고
    • Infection of human cells by an endogenous retrovirus of pigs
    • Patience, C., Y. Takeuchi, and R. Weiss. 1997. Infection of human cells by an endogenous retrovirus of pigs. Nat. Med. 3:282-286.
    • (1997) Nat. Med. , vol.3 , pp. 282-286
    • Patience, C.1    Takeuchi, Y.2    Weiss, R.3
  • 30
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: Computer simulations
    • Posada, D., and K. A. Crandall. 2001. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. Proc. Natl. Acad. Sci. USA 98:13757-13762.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 31
    • 0001197773 scopus 로고    scopus 로고
    • Evolutionary genetics of the suiformes as reconstructed using mtDNA sequencing
    • Randi, E., V. Lucchini, and C. H. Diong. 1996. Evolutionary genetics of the suiformes as reconstructed using mtDNA sequencing. J. Mamm. Evol. 3:163-195.
    • (1996) J. Mamm. Evol. , vol.3 , pp. 163-195
    • Randi, E.1    Lucchini, V.2    Diong, C.H.3
  • 33
    • 0028047579 scopus 로고
    • Function of the cytoplasmic domain of a retroviral transmembrane protein: P15E-p2E cleavage activates the membrane fusion capability of the murine leukemia virus Env protein
    • Rein, A., J. Mirro, J. G. Haynes, S. M. Ernst, and K. Nagashima. 1994. Function of the cytoplasmic domain of a retroviral transmembrane protein: p15E-p2E cleavage activates the membrane fusion capability of the murine leukemia virus Env protein. J. Virol. 68:1773-1781.
    • (1994) J. Virol. , vol.68 , pp. 1773-1781
    • Rein, A.1    Mirro, J.2    Haynes, J.G.3    Ernst, S.M.4    Nagashima, K.5
  • 35
    • 0032768413 scopus 로고    scopus 로고
    • Construction of a swine BAC library: Application to the characterization and mapping of porcine type C endoviral elements
    • Rogel-Gaillard, C., N. Bourgeaux, A. Billault, M. Vaiman, and P. Chardon. 1999. Construction of a swine BAC library: application to the characterization and mapping of porcine type C endoviral elements. Cytogenet. Cell Genet. 85:205-211.
    • (1999) Cytogenet. Cell Genet. , vol.85 , pp. 205-211
    • Rogel-Gaillard, C.1    Bourgeaux, N.2    Billault, A.3    Vaiman, M.4    Chardon, P.5
  • 36
    • 0036892499 scopus 로고    scopus 로고
    • Transcriptional regulation of porcine endogenous retroviruses released from porcine and infected human cells by heterotrimeric protein complex NF-Y and impact of immunosuppressive drugs
    • Scheef, G., N. Fischer, E. Flory, I. Schmitt, and R. R. Tönjes. 2002. Transcriptional regulation of porcine endogenous retroviruses released from porcine and infected human cells by heterotrimeric protein complex NF-Y and impact of immunosuppressive drugs. J. Virol. 76:12553-12563.
    • (2002) J. Virol. , vol.76 , pp. 12553-12563
    • Scheef, G.1    Fischer, N.2    Flory, E.3    Schmitt, I.4    Tönjes, R.R.5
  • 37
    • 0034947773 scopus 로고    scopus 로고
    • The number of a U3 repeat box acting as an enhancer in long terminal repeats of polytropic replication-competent porcine endogenous retroviruses dynamically fluctuates during serial virus passages in human cells
    • Scheef, G., N. Fischer, U. Krach, and R. R. Tönjes. 2001. The number of a U3 repeat box acting as an enhancer in long terminal repeats of polytropic replication-competent porcine endogenous retroviruses dynamically fluctuates during serial virus passages in human cells. J. Virol. 75:6933-6940.
    • (2001) J. Virol. , vol.75 , pp. 6933-6940
    • Scheef, G.1    Fischer, N.2    Krach, U.3    Tönjes, R.R.4
  • 38
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith, J. M. 1992. Analyzing the mosaic structure of genes. J. Mol. Evol. 34:126-129.
    • (1992) J. Mol. Evol. , vol.34 , pp. 126-129
    • Smith, J.M.1
  • 40
    • 0035856502 scopus 로고    scopus 로고
    • Endogenous retroviruses: Still active after all these years?
    • Stoye, J. P. 2001. Endogenous retroviruses: still active after all these years? Curr. Biol. 11:914-916.
    • (2001) Curr. Biol. , vol.11 , pp. 914-916
    • Stoye, J.P.1
  • 41
    • 0023193267 scopus 로고
    • The four classes of endogenous murine leukemia virus: Structural relationships and potential for recombination
    • Stoye, J. P., and J. M. Coffin. 1987. The four classes of endogenous murine leukemia virus: structural relationships and potential for recombination. J. Virol. 61:2659-2669.
    • (1987) J. Virol. , vol.61 , pp. 2659-2669
    • Stoye, J.P.1    Coffin, J.M.2
  • 43
    • 0242344177 scopus 로고
    • Even-toed ungulates
    • S. P. Parker (ed.), McGraw-Hill, New York, N.Y.
    • Thenius, E. 1990. Even-toed ungulates, p. 1-15. In S. P. Parker (ed.), Grzimek's encyclopedia of mammals, vol. 5. McGraw-Hill, New York, N.Y.
    • (1990) Grzimek's Encyclopedia of Mammals , vol.5 , pp. 1-15
    • Thenius, E.1
  • 44
    • 0007806125 scopus 로고
    • Zur Evolution und Verbreitungsgeschichte der Suidae (Artiodactyla, Mammalia)
    • Thenius, E. 1970. Zur Evolution und Verbreitungsgeschichte der Suidae (Artiodactyla, Mammalia). S. Säugetierk. 35:321-342.
    • (1970) S. Säugetierk. , vol.35 , pp. 321-342
    • Thenius, E.1
  • 45
    • 0242363218 scopus 로고    scopus 로고
    • Relative age of proviral porcine endogenous retrovirus sequences in Sus scrofa based on the molecular clock hypothesis
    • Tönjes, R. R., and M. Niebert. 2003. Relative age of proviral porcine endogenous retrovirus sequences in Sus scrofa based on the molecular clock hypothesis. J. Virol. 77:12363-12368.
    • (2003) J. Virol. , vol.77 , pp. 12363-12368
    • Tönjes, R.R.1    Niebert, M.2
  • 46
    • 0000225930 scopus 로고
    • Endogenous human retroviruses
    • J. A. Levy (ed.), Plenum Press, New York, N.Y.
    • Wilkinson, D. A., D. L. Mager, and J. A. Leong. 1994. Endogenous human retroviruses, p. 465-535. In J. A. Levy (ed.), The Retroviridae, vol. 1. Plenum Press, New York, N.Y.
    • (1994) The Retroviridae , vol.1 , pp. 465-535
    • Wilkinson, D.A.1    Mager, D.L.2    Leong, J.A.3
  • 47
    • 0037213856 scopus 로고    scopus 로고
    • Sequence analysis of porcine endogenous retrovirus long terminal repeats and identification of transcriptional regulatory regions
    • Wilson, C. A., S. Laeeq, A. Ritzhaupt, W. Colon-Moran, and F. K. Yoshimura. 2003. Sequence analysis of porcine endogenous retrovirus long terminal repeats and identification of transcriptional regulatory regions. J. Virol. 77:142-149.
    • (2003) J. Virol. , vol.77 , pp. 142-149
    • Wilson, C.A.1    Laeeq, S.2    Ritzhaupt, A.3    Colon-Moran, W.4    Yoshimura, F.K.5
  • 48
    • 0034815265 scopus 로고    scopus 로고
    • A simulation study of the reliability of recombination detection methods
    • Wiuf, C., T. Christensen, and J. Hein. 2001. A simulation study of the reliability of recombination detection methods. Mol. Biol. Evol. 18:1929-1939.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1929-1939
    • Wiuf, C.1    Christensen, T.2    Hein, J.3
  • 50
    • 0032853634 scopus 로고    scopus 로고
    • Evolutionary aspects of recombination in RNA viruses
    • Worobey, M., and E. C. Holmes. 1999. Evolutionary aspects of recombination in RNA viruses. J. Gen. Virol. 80:2535-2543.
    • (1999) J. Gen. Virol. , vol.80 , pp. 2535-2543
    • Worobey, M.1    Holmes, E.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.