Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees

Molecular Biology and Evolution

Volumn 32, Issue 1, 2015, Pages 13-22

  Groussin, Mathieu ^a   Hobbs, Joanne K ^b   Szöllósi, Gergely J ^a,c   Gribaldo, Simonetta ^d   Arcus, Vickery L ^b   Gouy, Manolo ^a  

^a UNIVERSITÉ LYON 1   (France)

^b UNIVERSITY OF WAIKATO   (New Zealand)

^c EÖTVÖS LORÁND UNIVERSITY   (Hungary)

^d INSTITUT PASTEUR   (France)

Author keywords

Ancestral sequence reconstruction; Gene tree reconciliation; Lateral gene transfer; Phylogeny; Protein evolution; Protein resurrection

Indexed keywords

BACTERIAL ENZYME; PROTEIN LEUB; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; PROTEIN;

ANCESTRAL SEQUENCE RECONSTRUCTION; ARTICLE; EVOLUTIONARY RATE; FIRMICUTES; GENE DUPLICATION; GENE LOSS; GENETIC PROCEDURES; GENOTYPE; HORIZONTAL GENE TRANSFER; IN VITRO STUDY; PHENOTYPE; PHYLOGENETIC TREE; PHYLOGENY; PHYLUM; PROTEIN FUNCTION; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT; SPECIES TREE AWARE GENE TREE; AMINO ACID SEQUENCE; BIOLOGY; COMPUTER SIMULATION; ENZYMOLOGY; GENETICS; GRAM POSITIVE BACTERIUM; MOLECULAR EVOLUTION; PROCEDURES;

BACTERIA (MICROORGANISMS); FIRMICUTES;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; EVOLUTION, MOLECULAR; GENOTYPE; GRAM-POSITIVE BACTERIA; PHENOTYPE; PHYLOGENY; PROTEINS;

EID: 84922378481     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msu305     Document Type: Article

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