메뉴 건너뛰기




Volumn 125, Issue , 2015, Pages 95-117

High-content 3D multicolor super-resolution localization microscopy

Author keywords

3D; DSTORM; High content screening; Immunofluorescence; Localization microscopy; Multicolor; Super resolution

Indexed keywords

ANIMAL; CELL LINE; COLOR; HUMAN; IMAGE PROCESSING; MICROSCOPY; MOUSE; PROCEDURES;

EID: 84921839031     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/bs.mcb.2014.10.004     Document Type: Article
Times cited : (22)

References (56)
  • 1
    • 60049098657 scopus 로고
    • Beiträge zur Theorie des Mikroskops und der mikroskopischen Wahrnehmung
    • Abbe E. Beiträge zur Theorie des Mikroskops und der mikroskopischen Wahrnehmung. Archiv Für Mikroskopische Anatomie 1873, 9(1):413-418. 10.1007/BF02956173.
    • (1873) Archiv Für Mikroskopische Anatomie , vol.9 , Issue.1 , pp. 413-418
    • Abbe, E.1
  • 2
    • 33747179417 scopus 로고    scopus 로고
    • Imaging intracellular fluorescent proteins at nanometer resolution
    • Betzig E., Patterson G.H., Sougrat R., Lindwasser O.W., Olenych S., Bonifacino J.S., et al. Imaging intracellular fluorescent proteins at nanometer resolution. Science 2006, 313(5793):1642-1645. 10.1126/science.1127344.
    • (2006) Science , vol.313 , Issue.5793 , pp. 1642-1645
    • Betzig, E.1    Patterson, G.H.2    Sougrat, R.3    Lindwasser, O.W.4    Olenych, S.5    Bonifacino, J.S.6
  • 3
    • 79960628523 scopus 로고    scopus 로고
    • Immunocytochemical methods and protocols
    • Humana Press, Totowa, NJ
    • Breu F., Guggenbichler S., Wollmann J. Immunocytochemical methods and protocols. Vasa 2010, Vol. 588. Humana Press, Totowa, NJ. 10.1007/978-1-59745-324-0.
    • (2010) Vasa , vol.588
    • Breu, F.1    Guggenbichler, S.2    Wollmann, J.3
  • 4
    • 84881399835 scopus 로고    scopus 로고
    • Monitoring actin cortex thickness in live cells
    • Clark A.G., Dierkes K., Paluch E.K. Monitoring actin cortex thickness in live cells. Biophysical Journal 2013, 105(3):570-580. 10.1016/j.bpj.2013.05.057.
    • (2013) Biophysical Journal , vol.105 , Issue.3 , pp. 570-580
    • Clark, A.G.1    Dierkes, K.2    Paluch, E.K.3
  • 6
    • 78649927344 scopus 로고    scopus 로고
    • Superresolution imaging of chemical synapses in the brain
    • Dani A., Huang B., Bergan J., Dulac C., Zhuang X. Superresolution imaging of chemical synapses in the brain. Neuron 2010, 68(5):843-856. 10.1016/j.neuron.2010.11.021.
    • (2010) Neuron , vol.68 , Issue.5 , pp. 843-856
    • Dani, A.1    Huang, B.2    Bergan, J.3    Dulac, C.4    Zhuang, X.5
  • 7
    • 82355191588 scopus 로고    scopus 로고
    • Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging
    • advance on(nOveMbeR)
    • Dempsey G.T., Vaughan J.C., Chen K.H., Bates M., Zhuang X. Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging. Nature Methods 2011, 1-14. advance on(nOveMbeR). 10.1038/nmeth.1768.
    • (2011) Nature Methods , pp. 1-14
    • Dempsey, G.T.1    Vaughan, J.C.2    Chen, K.H.3    Bates, M.4    Zhuang, X.5
  • 9
  • 11
    • 84878549450 scopus 로고    scopus 로고
    • Correcting chromatic offset in multicolor super-resolution localization microscopy
    • Erdelyi M., Rees E., Metcalf D., Schierle G.S.K., Dudas L., Sinko J., et al. Correcting chromatic offset in multicolor super-resolution localization microscopy. Optics Express 2013, 21(9):10978. 10.1364/OE.21.010978.
    • (2013) Optics Express , vol.21 , Issue.9 , pp. 10978
    • Erdelyi, M.1    Rees, E.2    Metcalf, D.3    Schierle, G.S.K.4    Dudas, L.5    Sinko, J.6
  • 12
    • 34347220153 scopus 로고    scopus 로고
    • Reverse transfection on cell arrays for high content screening microscopy
    • Erfle H., Neumann B., Liebel U., Rogers P., Held M., Walter T., et al. Reverse transfection on cell arrays for high content screening microscopy. Nat. Protocols 2007, 2(2):392-399.
    • (2007) Nat. Protocols , vol.2 , Issue.2 , pp. 392-399
    • Erfle, H.1    Neumann, B.2    Liebel, U.3    Rogers, P.4    Held, M.5    Walter, T.6
  • 13
    • 84900312205 scopus 로고    scopus 로고
    • A two-tier Golgi-based control of organelle size underpins the functional plasticity of endothelial cells
    • Ferraro F., Kriston-Vizi J., Metcalf D.J., Martin-Martin B., Freeman J., Burden J.J., et al. A two-tier Golgi-based control of organelle size underpins the functional plasticity of endothelial cells. Developmental Cell 2014, 29(3):292-304. 10.1016/j.devcel.2014.03.021.
    • (2014) Developmental Cell , vol.29 , Issue.3 , pp. 292-304
    • Ferraro, F.1    Kriston-Vizi, J.2    Metcalf, D.J.3    Martin-Martin, B.4    Freeman, J.5    Burden, J.J.6
  • 15
    • 84866240634 scopus 로고    scopus 로고
    • Adaptive optics enables 3D STED microscopy in aberrating specimens
    • Gould T.J., Burke D., Bewersdorf J., Booth M.J. Adaptive optics enables 3D STED microscopy in aberrating specimens. Optics Express 2012, 20(19):20998-21009. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=3635694&tool=pmcentrez&rendertype=abstract.
    • (2012) Optics Express , vol.20 , Issue.19 , pp. 20998-21009
    • Gould, T.J.1    Burke, D.2    Bewersdorf, J.3    Booth, M.J.4
  • 16
    • 84866309570 scopus 로고    scopus 로고
    • Quantitative super-resolution imaging reveals protein stoichiometry and nanoscale morphology of assembling HIV-Gag virions
    • Gunzenhäuser J., Olivier N., Pengo T., Manley S. Quantitative super-resolution imaging reveals protein stoichiometry and nanoscale morphology of assembling HIV-Gag virions. Nano Letters 2012, 12(9):4705-4710. 10.1021/nl3021076.
    • (2012) Nano Letters , vol.12 , Issue.9 , pp. 4705-4710
    • Gunzenhäuser, J.1    Olivier, N.2    Pengo, T.3    Manley, S.4
  • 17
    • 0034028826 scopus 로고    scopus 로고
    • Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. Short communication
    • Gustafsson M.G.L. Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy. Short communication. Journal of Microscopy 2000, 198(2):82-87. 10.1046/j.1365-2818.2000.00710.x.
    • (2000) Journal of Microscopy , vol.198 , Issue.2 , pp. 82-87
    • Gustafsson, M.G.L.1
  • 18
    • 42149143016 scopus 로고    scopus 로고
    • Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination
    • Gustafsson M.G.L., Shao L., Carlton P.M., Wang C.J.R., Golubovskaya I.N., Cande W.Z., et al. Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination. Biophysical Journal 2008, 94(12):4957-4970. 10.1529/biophysj.107.120345.
    • (2008) Biophysical Journal , vol.94 , Issue.12 , pp. 4957-4970
    • Gustafsson, M.G.L.1    Shao, L.2    Carlton, P.M.3    Wang, C.J.R.4    Golubovskaya, I.N.5    Cande, W.Z.6
  • 19
    • 35348819390 scopus 로고    scopus 로고
    • Properties, production, and applications of camelid single-domain antibody fragments
    • Harmsen M.M., De Haard H.J. Properties, production, and applications of camelid single-domain antibody fragments. Applied Microbiology and Biotechnology 2007, 77(1):13-22. 10.1007/s00253-007-1142-2.
    • (2007) Applied Microbiology and Biotechnology , vol.77 , Issue.1 , pp. 13-22
    • Harmsen, M.M.1    De Haard, H.J.2
  • 21
  • 22
    • 65549146329 scopus 로고    scopus 로고
    • PALM and STORM: what hides beyond the Rayleigh limit?
    • Henriques R., Mhlanga M.M. PALM and STORM: what hides beyond the Rayleigh limit?. Biotechnology Journal 2009, 4(6):846-857. 10.1002/biot.200900024.
    • (2009) Biotechnology Journal , vol.4 , Issue.6 , pp. 846-857
    • Henriques, R.1    Mhlanga, M.M.2
  • 24
    • 33845360042 scopus 로고    scopus 로고
    • Ultra-high resolution imaging by fluorescence photoactivation localization microscopy
    • Hess S.T., Girirajan T.P.K., Mason M.D. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophysical Journal 2006, 91(11):4258-4272. 10.1529/biophysj.106.091116.
    • (2006) Biophysical Journal , vol.91 , Issue.11 , pp. 4258-4272
    • Hess, S.T.1    Girirajan, T.P.K.2    Mason, M.D.3
  • 25
    • 79953283371 scopus 로고    scopus 로고
    • DAOSTORM: an algorithm for high- density super-resolution microscopy
    • Holden S.J., Uphoff S., Kapanidis A.N. DAOSTORM: an algorithm for high- density super-resolution microscopy. Nature Methods 2011, 8(4):279-280. 10.1038/nmeth0411-279.
    • (2011) Nature Methods , vol.8 , Issue.4 , pp. 279-280
    • Holden, S.J.1    Uphoff, S.2    Kapanidis, A.N.3
  • 26
    • 84879692643 scopus 로고    scopus 로고
    • Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms
    • Huang F., Hartwich T.M.P., Rivera-Molina F.E., Lin Y., Duim W.C., Long J.J., et al. Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms. Nature Methods 2013, 10(7):653-658. 10.1038/nmeth.2488.
    • (2013) Nature Methods , vol.10 , Issue.7 , pp. 653-658
    • Huang, F.1    Hartwich, T.M.P.2    Rivera-Molina, F.E.3    Lin, Y.4    Duim, W.C.5    Long, J.J.6
  • 27
    • 84879692643 scopus 로고    scopus 로고
    • Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms
    • Huang F., Hartwich T.M.P., Rivera-Molina F.E., Lin Y., Duim W.C., Long J.J., et al. Video-rate nanoscopy using sCMOS camera-specific single-molecule localization algorithms. Nature Methods 2013, 10(7):653-658. 10.1038/nmeth.2488.
    • (2013) Nature Methods , vol.10 , Issue.7 , pp. 653-658
    • Huang, F.1    Hartwich, T.M.P.2    Rivera-Molina, F.E.3    Lin, Y.4    Duim, W.C.5    Long, J.J.6
  • 28
    • 38949216802 scopus 로고    scopus 로고
    • Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy
    • Huang B., Wang W., Bates M., Zhuang X. Three-dimensional super-resolution imaging by stochastic optical reconstruction microscopy. Science (New York, NY) 2008, 319(5864):810-813. 10.1126/science.1153529.
    • (2008) Science (New York, NY) , vol.319 , Issue.5864 , pp. 810-813
    • Huang, B.1    Wang, W.2    Bates, M.3    Zhuang, X.4
  • 29
    • 79957823841 scopus 로고    scopus 로고
    • Fast, three-dimensional super-resolution imaging of live cells
    • Jones S.A., Shim S.-H., He J., Zhuang X. Fast, three-dimensional super-resolution imaging of live cells. Nature Methods 2011, 8(6):499-508. 10.1038/nmeth.1605.
    • (2011) Nature Methods , vol.8 , Issue.6 , pp. 499-508
    • Jones, S.A.1    Shim, S.-H.2    He, J.3    Zhuang, X.4
  • 30
    • 84865976338 scopus 로고    scopus 로고
    • Labeling DNA (or RNA) for single-molecule FRET
    • Joo C., Ha T. Labeling DNA (or RNA) for single-molecule FRET. Cold Spring Harbor Protocols 2012, 2012(9):1005-1008. 10.1101/pdb.prot071027.
    • (2012) Cold Spring Harbor Protocols , vol.2012 , Issue.9 , pp. 1005-1008
    • Joo, C.1    Ha, T.2
  • 31
    • 0034682512 scopus 로고    scopus 로고
    • Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission
    • Klar T.A., Jakobs S., Dyba M., Egner A., Hell S.W. Fluorescence microscopy with diffraction resolution barrier broken by stimulated emission. Proceedings of the National Academy of Sciences 2000, 97(15):8206-8210. 10.1073/pnas.97.15.8206.
    • (2000) Proceedings of the National Academy of Sciences , vol.97 , Issue.15 , pp. 8206-8210
    • Klar, T.A.1    Jakobs, S.2    Dyba, M.3    Egner, A.4    Hell, S.W.5
  • 32
    • 70350302609 scopus 로고    scopus 로고
    • Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging
    • Lippincott-Schwartz J., Patterson G.H. Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging. Trends in Cell Biology 2009, 19(11):555-565. 10.1016/j.tcb.2009.09.003.
    • (2009) Trends in Cell Biology , vol.19 , Issue.11 , pp. 555-565
    • Lippincott-Schwartz, J.1    Patterson, G.H.2
  • 33
    • 84864579552 scopus 로고    scopus 로고
    • Localization-based super-resolution microscopy with an sCMOS camera part II: experimental methodology for comparing sCMOS with EMCCD cameras
    • Long F., Zeng S., Huang Z.-L. Localization-based super-resolution microscopy with an sCMOS camera part II: experimental methodology for comparing sCMOS with EMCCD cameras. Optics Express 2012, 20(16):17741-17759. Retrieved fromhttp://www.ncbi.nlm.nih.gov/pubmed/23038326.
    • (2012) Optics Express , vol.20 , Issue.16 , pp. 17741-17759
    • Long, F.1    Zeng, S.2    Huang, Z.-L.3
  • 35
    • 84881505846 scopus 로고    scopus 로고
    • Camera technologies for low light imaging: Overview and relative advantages
    • Elsevier Inc, pp. 243-83
    • Moomaw B. Camera technologies for low light imaging: Overview and relative advantages. Methods in cell biology 2013, Vol. 114. Elsevier Inc, pp. 243-83. 4th ed., 10.1016/B978-0-12-407761-4.00011-7.
    • (2013) Methods in cell biology , vol.114
    • Moomaw, B.1
  • 36
    • 84861180866 scopus 로고    scopus 로고
    • Statistical deconvolution for superresolution fluorescence microscopy
    • Mukamel E.a, Babcock H., Zhuang X. Statistical deconvolution for superresolution fluorescence microscopy. Biophysical Journal 2012, 102(10):2391-2400. 10.1016/j.bpj.2012.03.070.
    • (2012) Biophysical Journal , vol.102 , Issue.10 , pp. 2391-2400
    • Mukamel, E.1    Babcock, H.2    Zhuang, X.3
  • 37
    • 84878935042 scopus 로고    scopus 로고
    • Nanobodies: natural single-domain antibodies
    • Muyldermans S. Nanobodies: natural single-domain antibodies. Annual Review of Biochemistry 2013, 82:775-797. 10.1146/annurev-biochem-063011-092449.
    • (2013) Annual Review of Biochemistry , vol.82 , pp. 775-797
    • Muyldermans, S.1
  • 39
    • 84880418689 scopus 로고    scopus 로고
    • Resolution doubling in 3D-STORM imaging through improved buffers
    • Olivier N., Keller D., Gönczy P., Manley S. Resolution doubling in 3D-STORM imaging through improved buffers. PloS One 2013, 8(7):e69004. 10.1371/journal.pone.0069004.
    • (2013) PloS One , vol.8 , Issue.7 , pp. e69004
    • Olivier, N.1    Keller, D.2    Gönczy, P.3    Manley, S.4
  • 40
    • 84906239598 scopus 로고    scopus 로고
    • ThunderSTORM: a comprehensive ImageJ plugin for PALM and STORM data analysis and super-resolution imaging
    • Ovesny M., Křižek P., Borkovec J., Svindrych Z., Hagen G.M. ThunderSTORM: a comprehensive ImageJ plugin for PALM and STORM data analysis and super-resolution imaging. Bioinformatics (Oxford, England) 2014, 30(16):2389-2390. 10.1093/bioinformatics/btu202.
    • (2014) Bioinformatics (Oxford, England) , vol.30 , Issue.16 , pp. 2389-2390
    • Ovesny, M.1    Křižek, P.2    Borkovec, J.3    Svindrych, Z.4    Hagen, G.M.5
  • 41
    • 84861979783 scopus 로고    scopus 로고
    • A simple, versatile method for GFP-based super-resolution microscopy via nanobodies
    • Ries J., Kaplan C., Platonova E., Eghlidi H., Ewers H. A simple, versatile method for GFP-based super-resolution microscopy via nanobodies. Nature Methods 2012, 9(6):582-584. 10.1038/nmeth.1991.
    • (2012) Nature Methods , vol.9 , Issue.6 , pp. 582-584
    • Ries, J.1    Kaplan, C.2    Platonova, E.3    Eghlidi, H.4    Ewers, H.5
  • 42
    • 33749026335 scopus 로고    scopus 로고
    • Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM)
    • Rust M., Bates M., Zhuang X. Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM). Nature Methods 2006, 3(10):793-795. 10.1038/NMETH929.
    • (2006) Nature Methods , vol.3 , Issue.10 , pp. 793-795
    • Rust, M.1    Bates, M.2    Zhuang, X.3
  • 43
    • 77954995399 scopus 로고    scopus 로고
    • A guide to super-resolution fluorescence microscopy
    • Schermelleh L., Heintzmann R., Leonhardt H. A guide to super-resolution fluorescence microscopy. Journal of Cell Biology 2010, 190(2):165-175. 10.1083/jcb.201002018.
    • (2010) Journal of Cell Biology , vol.190 , Issue.2 , pp. 165-175
    • Schermelleh, L.1    Heintzmann, R.2    Leonhardt, H.3
  • 45
    • 84873350446 scopus 로고    scopus 로고
    • Quantifying spatial organization in point-localization superresolution images using pair correlation analysis
    • Sengupta P., Jovanovic-Talisman T., Lippincott-Schwartz J. Quantifying spatial organization in point-localization superresolution images using pair correlation analysis. Nature Protocols 2013, 8(2):345-354. 10.1038/nprot.2013.005.
    • (2013) Nature Protocols , vol.8 , Issue.2 , pp. 345-354
    • Sengupta, P.1    Jovanovic-Talisman, T.2    Lippincott-Schwartz, J.3
  • 46
    • 82355190241 scopus 로고    scopus 로고
    • Super-resolution 3D microscopy of live whole cells using structured illumination
    • octobeR
    • Shao L., Kner P., Rego E.H., Gustafsson M.G.L. Super-resolution 3D microscopy of live whole cells using structured illumination. Nature Methods 2011, 8(octobeR):1044-1046. 10.1038/nmeth.1734.
    • (2011) Nature Methods , vol.8 , pp. 1044-1046
    • Shao, L.1    Kner, P.2    Rego, E.H.3    Gustafsson, M.G.L.4
  • 47
    • 84895535991 scopus 로고    scopus 로고
    • Fluorophore localization algorithms for super-resolution microscopy
    • Small A., Stahlheber S. Fluorophore localization algorithms for super-resolution microscopy. Nature Methods 2014, 11(3):267-279. 10.1038/nmeth.2844.
    • (2014) Nature Methods , vol.11 , Issue.3 , pp. 267-279
    • Small, A.1    Stahlheber, S.2
  • 48
    • 84886820997 scopus 로고    scopus 로고
    • Regulated vesicle fusion generates signaling nanoterritories that control T cell activation at the immunological synapse
    • Soares H., Henriques R., Sachse M., Ventimiglia L., Alonso M.a, Zimmer C., et al. Regulated vesicle fusion generates signaling nanoterritories that control T cell activation at the immunological synapse. The Journal of Experimental Medicine 2013, 210(11):2415-2433. 10.1084/jem.20130150.
    • (2013) The Journal of Experimental Medicine , vol.210 , Issue.11 , pp. 2415-2433
    • Soares, H.1    Henriques, R.2    Sachse, M.3    Ventimiglia, L.4    Alonso, M.5    Zimmer, C.6
  • 49
    • 0036420965 scopus 로고    scopus 로고
    • Molecular recognition in antibody-antigen complexes
    • Sundberg E.J., Mariuzza R.A. Molecular recognition in antibody-antigen complexes. Advances in Protein Chemistry 2002, 61:119-160. Retrieved fromhttp://www.ncbi.nlm.nih.gov/pubmed/12461823.
    • (2002) Advances in Protein Chemistry , vol.61 , pp. 119-160
    • Sundberg, E.J.1    Mariuzza, R.A.2
  • 51
    • 0036231415 scopus 로고    scopus 로고
    • Precise nanometer localization analysis for individual fluorescent probes
    • Thompson R.E., Larson D.R., Webb W.W. Precise nanometer localization analysis for individual fluorescent probes. Biophysical Journal 2002, 82(5):2775-2783. 10.1016/S0006-3495(02)75618-X.
    • (2002) Biophysical Journal , vol.82 , Issue.5 , pp. 2775-2783
    • Thompson, R.E.1    Larson, D.R.2    Webb, W.W.3
  • 53
    • 67649612733 scopus 로고    scopus 로고
    • Accuracy and precision in quantitative fluorescence microscopy
    • Waters J.C. Accuracy and precision in quantitative fluorescence microscopy. Journal of Cell Biology 2009, 185(7):1135-1148. 10.1083/jcb.200903097.
    • (2009) Journal of Cell Biology , vol.185 , Issue.7 , pp. 1135-1148
    • Waters, J.C.1
  • 56
    • 23744499004 scopus 로고    scopus 로고
    • Fluorescence imaging with one nanometer accuracy: application to molecular motors
    • Yildiz A., Selvin P.R. Fluorescence imaging with one nanometer accuracy: application to molecular motors. Accounts of Chemical Research 2005, 38(7):574-582. 10.1021/ar040136s.
    • (2005) Accounts of Chemical Research , vol.38 , Issue.7 , pp. 574-582
    • Yildiz, A.1    Selvin, P.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.