메뉴 건너뛰기




Volumn 16, Issue 4, 2008, Pages 549-557

Structures of Human Pumilio with Noncognate RNAs Reveal Molecular Mechanisms for Binding Promiscuity

Author keywords

RNA

Indexed keywords

MESSENGER RNA; NUCLEOTIDE; PROTEIN; PROTEIN CYCB; PROTEIN PUF5; PUMILIO PROTEIN; UNCLASSIFIED DRUG;

EID: 41449107841     PISSN: 09692126     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.str.2008.01.006     Document Type: Article
Times cited : (59)

References (41)
  • 1
    • 0033224242 scopus 로고    scopus 로고
    • Maternal Pumilio acts together with Nanos in germline development in Drosophila embryos
    • Asaoka-Taguchi M., Yamada M., Nakamura A., Hanyu K., and Kobayashi S. Maternal Pumilio acts together with Nanos in germline development in Drosophila embryos. Nat. Cell Biol. 1 (1999) 431-437
    • (1999) Nat. Cell Biol. , vol.1 , pp. 431-437
    • Asaoka-Taguchi, M.1    Yamada, M.2    Nakamura, A.3    Hanyu, K.4    Kobayashi, S.5
  • 2
    • 15444365620 scopus 로고    scopus 로고
    • Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1
    • Bernstein D., Hook B., Hajarnavis A., Opperman L., and Wickens M. Binding specificity and mRNA targets of a C. elegans PUF protein, FBF-1. RNA 11 (2005) 447-458
    • (2005) RNA , vol.11 , pp. 447-458
    • Bernstein, D.1    Hook, B.2    Hajarnavis, A.3    Opperman, L.4    Wickens, M.5
  • 4
    • 0035949575 scopus 로고    scopus 로고
    • Poly(A)-independent regulation of maternal hunchback translation in the Drosophila embryo
    • Chagnovich D., and Lehmann R. Poly(A)-independent regulation of maternal hunchback translation in the Drosophila embryo. Proc. Natl. Acad. Sci. USA 98 (2001) 11359-11364
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 11359-11364
    • Chagnovich, D.1    Lehmann, R.2
  • 5
    • 33748784359 scopus 로고    scopus 로고
    • Engineering RNA sequence specificity of Pumilio repeats
    • Cheong C.G., and Hall T.M. Engineering RNA sequence specificity of Pumilio repeats. Proc. Natl. Acad. Sci. USA 103 (2006) 13635-13639
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 13635-13639
    • Cheong, C.G.1    Hall, T.M.2
  • 6
    • 33749989519 scopus 로고    scopus 로고
    • Cap-dependent translational inhibition establishes two opposing morphogen gradients in Drosophila embryos
    • Cho P.F., Gamberi C., Cho-Park Y.A., Cho-Park I.B., Lasko P., and Sonenberg N. Cap-dependent translational inhibition establishes two opposing morphogen gradients in Drosophila embryos. Curr. Biol. 16 (2006) 2035-2041
    • (2006) Curr. Biol. , vol.16 , pp. 2035-2041
    • Cho, P.F.1    Gamberi, C.2    Cho-Park, Y.A.3    Cho-Park, I.B.4    Lasko, P.5    Sonenberg, N.6
  • 9
    • 0035917508 scopus 로고    scopus 로고
    • Structure of Pumilio reveals similarity between RNA and peptide binding motifs
    • Edwards T.A., Pyle S.E., Wharton R.P., and Aggarwal A.K. Structure of Pumilio reveals similarity between RNA and peptide binding motifs. Cell 105 (2001) 281-289
    • (2001) Cell , vol.105 , pp. 281-289
    • Edwards, T.A.1    Pyle, S.E.2    Wharton, R.P.3    Aggarwal, A.K.4
  • 10
    • 19344365947 scopus 로고    scopus 로고
    • Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
    • Gerber A.P., Herschlag D., and Brown P.O. Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol. 2 (2004) E79
    • (2004) PLoS Biol. , vol.2
    • Gerber, A.P.1    Herschlag, D.2    Brown, P.O.3
  • 11
    • 33645217973 scopus 로고    scopus 로고
    • Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster
    • Gerber A.P., Luschnig S., Krasnow M.A., Brown P.O., and Herschlag D. Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 103 (2006) 4487-4492
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 4487-4492
    • Gerber, A.P.1    Luschnig, S.2    Krasnow, M.A.3    Brown, P.O.4    Herschlag, D.5
  • 12
    • 2942692177 scopus 로고    scopus 로고
    • A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization
    • Gu W., Deng Y., Zenklusen D., and Singer R.H. A new yeast PUF family protein, Puf6p, represses ASH1 mRNA translation and is required for its localization. Genes Dev. 18 (2004) 1452-1465
    • (2004) Genes Dev. , vol.18 , pp. 1452-1465
    • Gu, W.1    Deng, Y.2    Zenklusen, D.3    Singer, R.H.4
  • 13
    • 34447503943 scopus 로고    scopus 로고
    • Two yeast PUF proteins negatively regulate a single mRNA
    • Hook B.A., Goldstrohm A.C., Seay D.J., and Wickens M. Two yeast PUF proteins negatively regulate a single mRNA. J. Biol. Chem. 282 (2007) 15430-15438
    • (2007) J. Biol. Chem. , vol.282 , pp. 15430-15438
    • Hook, B.A.1    Goldstrohm, A.C.2    Seay, D.J.3    Wickens, M.4
  • 14
    • 4644284749 scopus 로고    scopus 로고
    • Recruitment of the Puf3 protein to its mRNA target for regulation of mRNA decay in yeast
    • Jackson Jr. J.S., Houshmandi S.S., Lopez Leban F., and Olivas W.M. Recruitment of the Puf3 protein to its mRNA target for regulation of mRNA decay in yeast. RNA 10 (2004) 1625-1636
    • (2004) RNA , vol.10 , pp. 1625-1636
    • Jackson Jr., J.S.1    Houshmandi, S.S.2    Lopez Leban, F.3    Olivas, W.M.4
  • 15
    • 84889120137 scopus 로고
    • Improved methods for building models in electron density maps and the location of errors in these models
    • Jones T.A., Zou J.-Y., and Cowan S.W. Improved methods for building models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47 (1991) 110-119
    • (1991) Acta Crystallogr. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.-Y.2    Cowan, S.W.3
  • 16
    • 34248580923 scopus 로고    scopus 로고
    • Translational control of maternal Cyclin B mRNA by Nanos in the Drosophila germline
    • Kadyrova L.Y., Habara Y., Lee T.H., and Wharton R.P. Translational control of maternal Cyclin B mRNA by Nanos in the Drosophila germline. Development 134 (2007) 1519-1527
    • (2007) Development , vol.134 , pp. 1519-1527
    • Kadyrova, L.Y.1    Habara, Y.2    Lee, T.H.3    Wharton, R.P.4
  • 17
    • 0000243829 scopus 로고
    • PROCHECK: a program to check the stereochemical quality of protein structures
    • Laskowski R.A., MacArthur M.W., Moss D.S., and Thornton J.M. PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr. A47 (1993) 110-119
    • (1993) J. Appl. Crystallogr. , vol.A47 , pp. 110-119
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 18
    • 0023202815 scopus 로고
    • Involvement of the pumilio gene in the transport of an abdominal signal in the Drosophila embryo
    • Lehmann R., and Nusslein-Volhard C. Involvement of the pumilio gene in the transport of an abdominal signal in the Drosophila embryo. Nature 329 (1987) 167-170
    • (1987) Nature , vol.329 , pp. 167-170
    • Lehmann, R.1    Nusslein-Volhard, C.2
  • 19
    • 0030755562 scopus 로고    scopus 로고
    • A novel group of pumilio mutations affects the asymmetric division of germline stem cells in the Drosophila ovary
    • Lin H., and Spradling A.C. A novel group of pumilio mutations affects the asymmetric division of germline stem cells in the Drosophila ovary. Development 124 (1997) 2463-2476
    • (1997) Development , vol.124 , pp. 2463-2476
    • Lin, H.1    Spradling, A.C.2
  • 22
    • 8844253301 scopus 로고    scopus 로고
    • The translational repressor Pumilio regulates presynaptic morphology and controls postsynaptic accumulation of translation factor eIF-4E
    • Menon K.P., Sanyal S., Habara Y., Sanchez R., Wharton R.P., Ramaswami M., and Zinn K. The translational repressor Pumilio regulates presynaptic morphology and controls postsynaptic accumulation of translation factor eIF-4E. Neuron 44 (2004) 663-676
    • (2004) Neuron , vol.44 , pp. 663-676
    • Menon, K.P.1    Sanyal, S.2    Habara, Y.3    Sanchez, R.4    Wharton, R.P.5    Ramaswami, M.6    Zinn, K.7
  • 23
    • 0028987223 scopus 로고
    • Binding of pumilio to maternal hunchback mRNA is required for posterior patterning in Drosophila embryos
    • Murata Y., and Wharton R.P. Binding of pumilio to maternal hunchback mRNA is required for posterior patterning in Drosophila embryos. Cell 80 (1995) 747-756
    • (1995) Cell , vol.80 , pp. 747-756
    • Murata, Y.1    Wharton, R.P.2
  • 24
    • 0034388021 scopus 로고    scopus 로고
    • The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast
    • Olivas W., and Parker R. The Puf3 protein is a transcript-specific regulator of mRNA degradation in yeast. EMBO J. 19 (2000) 6602-6611
    • (2000) EMBO J. , vol.19 , pp. 6602-6611
    • Olivas, W.1    Parker, R.2
  • 25
    • 33644991514 scopus 로고    scopus 로고
    • A single spacer nucleotide determines the specificities of two mRNA regulatory proteins
    • Opperman L., Hook B., DeFino M., Bernstein D.S., and Wickens M. A single spacer nucleotide determines the specificities of two mRNA regulatory proteins. Nat. Struct. Mol. Biol. 12 (2005) 945-951
    • (2005) Nat. Struct. Mol. Biol. , vol.12 , pp. 945-951
    • Opperman, L.1    Hook, B.2    DeFino, M.3    Bernstein, D.S.4    Wickens, M.5
  • 26
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
    • (1997) Methods Enzymol. , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 28
    • 0033569404 scopus 로고    scopus 로고
    • Recruitment of Nanos to hunchback mRNA by Pumilio
    • Sonoda J., and Wharton R.P. Recruitment of Nanos to hunchback mRNA by Pumilio. Genes Dev. 13 (1999) 2704-2712
    • (1999) Genes Dev. , vol.13 , pp. 2704-2712
    • Sonoda, J.1    Wharton, R.P.2
  • 29
    • 0035868645 scopus 로고    scopus 로고
    • Drosophila Brain Tumor is a translational repressor
    • Sonoda J., and Wharton R.P. Drosophila Brain Tumor is a translational repressor. Genes Dev. 15 (2001) 762-773
    • (2001) Genes Dev. , vol.15 , pp. 762-773
    • Sonoda, J.1    Wharton, R.P.2
  • 30
    • 0035254656 scopus 로고    scopus 로고
    • Post-transcriptional regulation through the HO 3′-UTR by Mpt5, a yeast homolog of Pumilio and FBF
    • Tadauchi T., Matsumoto K., Herskowitz I., and Irie K. Post-transcriptional regulation through the HO 3′-UTR by Mpt5, a yeast homolog of Pumilio and FBF. EMBO J. 20 (2001) 552-561
    • (2001) EMBO J. , vol.20 , pp. 552-561
    • Tadauchi, T.1    Matsumoto, K.2    Herskowitz, I.3    Irie, K.4
  • 31
    • 0035022798 scopus 로고    scopus 로고
    • Crystal structure of a Pumilio homology domain
    • Wang X., Zamore P.D., and Hall T.M. Crystal structure of a Pumilio homology domain. Mol. Cell 7 (2001) 855-865
    • (2001) Mol. Cell , vol.7 , pp. 855-865
    • Wang, X.1    Zamore, P.D.2    Hall, T.M.3
  • 32
    • 0037162703 scopus 로고    scopus 로고
    • Modular recognition of RNA by a human pumilio-homology domain
    • Wang X., McLachlan J., Zamore P.D., and Hall T.M. Modular recognition of RNA by a human pumilio-homology domain. Cell 110 (2002) 501-512
    • (2002) Cell , vol.110 , pp. 501-512
    • Wang, X.1    McLachlan, J.2    Zamore, P.D.3    Hall, T.M.4
  • 33
    • 0025748167 scopus 로고
    • RNA regulatory elements mediate control of Drosophila body pattern by the posterior morphogen nanos
    • Wharton R.P., and Struhl G. RNA regulatory elements mediate control of Drosophila body pattern by the posterior morphogen nanos. Cell 67 (1991) 955-967
    • (1991) Cell , vol.67 , pp. 955-967
    • Wharton, R.P.1    Struhl, G.2
  • 34
    • 39049185224 scopus 로고    scopus 로고
    • mRNA regulation by Puf domain proteins
    • Wharton R.P., and Aggarwal A.K. mRNA regulation by Puf domain proteins. Sci. STKE 2006 (2006) pe37
    • (2006) Sci. STKE , vol.2006
    • Wharton, R.P.1    Aggarwal, A.K.2
  • 35
    • 0032059805 scopus 로고    scopus 로고
    • The Pumilio RNA-binding domain is also a translational regulator
    • Wharton R.P., Sonoda J., Lee T., Patterson M., and Murata Y. The Pumilio RNA-binding domain is also a translational regulator. Mol. Cell 1 (1998) 863-872
    • (1998) Mol. Cell , vol.1 , pp. 863-872
    • Wharton, R.P.1    Sonoda, J.2    Lee, T.3    Patterson, M.4    Murata, Y.5
  • 36
    • 0036498828 scopus 로고    scopus 로고
    • A PUF family portrait: 3′UTR regulation as a way of life
    • Wickens M., Bernstein D.S., Kimble J., and Parker R. A PUF family portrait: 3′UTR regulation as a way of life. Trends Genet. 18 (2002) 150-157
    • (2002) Trends Genet. , vol.18 , pp. 150-157
    • Wickens, M.1    Bernstein, D.S.2    Kimble, J.3    Parker, R.4
  • 37
    • 0013461295 scopus 로고    scopus 로고
    • Macromolecular TLS refinement in REFMAC at moderate resolutions
    • Winn M.D., Murshudov G.N., and Papiz M.Z. Macromolecular TLS refinement in REFMAC at moderate resolutions. Methods Enzymol. 374 (2003) 300-321
    • (2003) Methods Enzymol. , vol.374 , pp. 300-321
    • Winn, M.D.1    Murshudov, G.N.2    Papiz, M.Z.3
  • 38
    • 0030757678 scopus 로고    scopus 로고
    • Nanos and pumilio establish embryonic polarity in Drosophila by promoting posterior deadenylation of hunchback mRNA
    • Wreden C., Verrotti A.C., Schisa J.A., Lieberfarb M.E., and Strickland S. Nanos and pumilio establish embryonic polarity in Drosophila by promoting posterior deadenylation of hunchback mRNA. Development 124 (1997) 3015-3023
    • (1997) Development , vol.124 , pp. 3015-3023
    • Wreden, C.1    Verrotti, A.C.2    Schisa, J.A.3    Lieberfarb, M.E.4    Strickland, S.5
  • 39
    • 1542350756 scopus 로고    scopus 로고
    • Nanos and Pumilio are essential for dendrite morphogenesis in Drosophila peripheral neurons
    • Ye B., Petritsch C., Clark I.E., Gavis E.R., Jan L.Y., and Jan Y.N. Nanos and Pumilio are essential for dendrite morphogenesis in Drosophila peripheral neurons. Curr. Biol. 14 (2004) 314-321
    • (2004) Curr. Biol. , vol.14 , pp. 314-321
    • Ye, B.1    Petritsch, C.2    Clark, I.E.3    Gavis, E.R.4    Jan, L.Y.5    Jan, Y.N.6
  • 40
    • 0031440357 scopus 로고    scopus 로고
    • The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins
    • Zamore P.D., Williamson J.R., and Lehmann R. The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins. RNA 3 (1997) 1421-1433
    • (1997) RNA , vol.3 , pp. 1421-1433
    • Zamore, P.D.1    Williamson, J.R.2    Lehmann, R.3
  • 41
    • 0031452082 scopus 로고    scopus 로고
    • A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line
    • Zhang B., Gallegos M., Puoti A., Durkin E., Fields S., Kimble J., and Wickens M.P. A conserved RNA-binding protein that regulates sexual fates in the C. elegans hermaphrodite germ line. Nature 390 (1997) 477-484
    • (1997) Nature , vol.390 , pp. 477-484
    • Zhang, B.1    Gallegos, M.2    Puoti, A.3    Durkin, E.4    Fields, S.5    Kimble, J.6    Wickens, M.P.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.