Viroids: Small probes for exploring the vast universe of RNA trafficking in plants

Journal of Integrative Plant Biology

Volumn 52, Issue 1, 2010, Pages 28-39

  Wang, Ying ^a   Ding, Biao ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS RNA;

BIOLOGICAL ANALYSIS; DEFENSE MECHANISM; EXPERIMENTAL STUDY; GROWTH RESPONSE; PATHOGEN; PLANT; RNA;

CYTOLOGY; GENETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHLOEM; PLANT; PLASMODESMA; REVIEW; RNA TRANSPORT; VIROID; VIROLOGY;

BASE SEQUENCE; MOLECULAR SEQUENCE DATA; PHLOEM; PLANTS; PLASMODESMATA; RNA TRANSPORT; RNA, VIRAL; VIROIDS;

VIROIDS;

EID: 73949105436     PISSN: 16729072     EISSN: 17447909     Source Type: Journal    
DOI: 10.1111/j.1744-7909.2010.00900.x     Document Type: Review

References (75)

1. Aoki K, Suzui N, Fujimaki S, Dohmae N, Yonekura-Sakakibara K, Fujiwara T, Hayashib H, Yamayaa T, Sakakibaraa H. Destination-selective long-distance movement of Phloem proteins. Plant Cell 2005, 17:1801-1814.
2. Banerjee AK, Chatterjee M, Yu Y, Suh SG, Miller WA, Hannapel DJ. Dynamics of a mobile RNA of potato involved in a long-distance signaling pathway. Plant Cell 2006, 18:3443-3457.
3. Boevink P, Oparka KJ. Virus-host interactions during movement processes. Plant Physiol. 2005, 138:1815-1821.
4. Buhtz A, Springer F, Chappell L, Baulcombe DC, Kehr J. Identification and characterization of small RNAs from the phloem of Brassica napus. Plant J. 2008, 53:739-749.
5. Citovsky V, Zambryski P. Systemic transport of RNA in plants. Trends Plant Sci. 2000, 5:52-54.
6. David-Schwartz R, Runo S, Townsley B, Machuka J, Sinha N. Long-distance transport of mRNA via parenchyma cells and phloem across the host-parasite junction in Cuscuta. New Phytol. 2008, 179:1133-1141.
7. Deeken R, Ache P, Kajahn I, Klinkenberg J, Bringmann G, Hedrich R. Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments. Plant J. 2008, 55:746-759.
8. Di Serio F, Flores R. Viroids: molecular implements for dissecting RNA trafficking in plants. RNA Biol. 2008, 5:128-131.
9. Díaz-Pendón JA, Ding SW. Direct and indirect roles of viral suppressors of RNA silencing in pathogenesis. Annu. Rev. Phytopathol. 2008, 46:303-326.
10. Ding B. The biology of viroid-host interactions. Annu. Rev. Phytopathol. 2009, 47:105-131.
11. Ding B, Itaya A. Control of directional macromoleclar trafficking across specific cellular boundaries: a key to integrative plant biology. J. Integr. Plant Biol. 2007a, 49:1227-1234.
12. Ding B, Itaya A. Viroid: a useful model for studying the basic principles of infection and RNA biology. Mol. Plant Microbe Interact. 2007b, 20:7-20.
13. Ding B, Itaya A, Woo Y. Plasmodesmata and cell-to-cell communication in plants. Int. Rev. Cytol. 1999, 190:251-316.
14. Ding B, Itaya A, Zhong X. Viroid trafficking, a small RNA makes a big move. Curr. Opin. Plant Biol. 2005, 8:606-612.
15. Ding B, Kwon MO, Hammond R, Owens R. Cell-to-cell movement of potato spindle tuber viroid. Plant J. 1997, 12:931-936.
16. Ding B, Wang Y. Viroids: uniquely simple and tractable models to elucidate regulation of cell-to-cell trafficking of RNA. DNA Cell Biol. 2009, 28:51-56.
17. Ding B, Zhong X, Schaechter M. Viroids/Virusoids. Encyclopedia Microbiol 2009, 535-545. In, ed, 3rd ed, Elsevier Inc, Amsterdam, pp
18. Ding SW, Voinnet O. Antiviral immunity directed by small RNAs. Cell 2007, 130:413-426.
19. Doering-Saad C, Newbury HJ, Couldridge CE, Bale JS, Pritchard J. A phloem-enriched cDNA library from Ricinus: insights into phloem function. J. Exp. Bot. 2006, 57:3183-3193.
20. Flores R, Gas M, Molina Serrano D, Nohales M-thomampersand, Carbonell A, Gago S, De la Peña M, J Daròs JA. Viroid replication: rolling-circles, enzymes and ribozymes. Viruses 2009, 1:317-334.
21. Flores R, Hernandez C, Martinez de Alba AE, Daros JA, Di Serio F. Viroids and viroid-host interactions. Annu. Rev. Phytopathol. 2005, 43:117-139.
22. Foster TM, Lough TJ, Emerson SJ, Lee RH, Bowman JL, Forster RL, Lucas WJ. A surveillance system regulates selective entry of RNA into the shoot apex. Plant Cell 2002, 14:1497-1508.
23. Gago S, Elena SF, Flores R, Sanjuan R. Extremely high mutation rate of a hammerhead viroid. Science 2009, 323:1308.
24. Gómez G, Pallás V. Identification of an in vitro ribonucleoprotein complex between a viroid RNA and a phloem protein from cucumber plants. Mol. Plant Microbe Interact. 2001, 14:910-913.
25. Gómez G, Pallás V. A long-distance translocatable phloem protein from cucumber forms a ribonucleoprotein complex in vivo with Hop stunt viroid RNA. J. Virol. 2004, 78:10104-10110.
26. Gómez G, Pallás V. Mature monomeric forms of Hop stunt viroid resist RNA silencing in transgenic plants. Plant J. 2007, 51:1041-1049.
27. Gómez G, Torres H, Pallás V. Identification of translocatable RNA-binding phloem proteins from melon, potential components of the long-distance RNA transport system. Plant J. 2005, 41:107-116.
28. Gopinath K, Kao CC. Replication-independent long-distance trafficking by viral RNAs in Nicotiana benthamiana. Plant Cell 2007, 19:1179-1191.
29. Ham BK, Brandom JL, Xoconostle-Cázares B, Ringgold V, Lough TJ, Lucas WJ. A polypyrimidine tract binding protein, pumpkin RBP50, forms the basis of a phloem-mobile ribonucleoprotein complex. Plant Cell 2009, 21:197-215.
30. Hannapel DJ. A model system of development regulated by the long-distance transport of mRNA. J. Integr. Plant Biol. 2010, 52:40-52.
31. Haywood V, Yu TS, Huang NC, Lucas WJ. Phloem long-distance trafficking of GIBBERELLIC ACID-INSENSITIVE RNA regulates leaf development. Plant J. 2005, 42:49-68.
32. Hu Y, Feldstein PA, Hammond J, Hammond RW, Bottino PJ, Owens RA. Destabilization of potato spindle tuber viroid by mutations in the left terminal loop. J. Gen. Virol. 1997, 78:1199-1206.
33. Huang NC, Yu TS. The sequences of Arabidopsis GA-INSENSITIVE RNA constitute the motifs that are necessary and sufficient for RNA long-distance trafficking. Plant J. 2009, 59:921-929.
34. Igarashi A, Yamagata K, Sugai T, Takahashi Y, Sugawara E, Tamura A, Yaegashi H, Yamagishi N, Takahashi T, Isogai M, Takahashi H, Yoshikawa N. Apple latent spherical virus vectors for reliable and effective virus-induced gene silencing among a broad range of plants including tobacco, tomato, Arabidopsis thaliana, cucurbits, and legumes. Virology 2009, 386:407-416.
35. Kalantidis K, Schumacher HT, Alexiadis T, Helm JM. RNA silencing movement in plants. Biol. Cell 2008, 100:13-26.
36. Kehr J, Buhtz A. Long distance transport and movement of RNA through the phloem. J. Exp. Bot. 2008, 59:85-92.
37. Kim M, Canio W, Kessler S, Sinha N. Developmental changes due to long-distance movement of a homeobox fusion transcript in tomato. Science 2001, 293:287-289.
38. Li C, Zhang K, Zeng X, Jackson S, Zhou Y, Hong Y. A cis element within flowering locus T mRNA determines its mobility and facilitates trafficking of heterologous viral RNA. J. Virol. 2009, 83:3540-3548.
39. Lin SI, Chiang SF, Lin WY, Chen JW, Tseng CY, Wu PC, Chiou TJ. Regulatory network of microRNA399 and PHO2 by systemic signaling. Plant Physiol. 2008, 147:732-746.
40. Lough TJ, Lee RH, Emerson SJ, Forster RL, Lucas WJ. Functional analysis of the 5' untranslated region of potexvirus RNA reveals a role in viral replication and cell-to-cell movement. Virology 2006, 351:455-465.
41. Lough TJ, Lucas WJ. Integrative plant biology: role of phloem long-distance macromolecular trafficking. Annu Rev. Plant Biol. 2006, 57:203-232.
42. Lucas WJ. Plant viral movement proteins: agents for cell-to-cell trafficking of viral genomes. Virology 2006, 344:169-184.
43. Lucas WJ, Bouche-Pillon S, Jackson DP, Nguyen L, Baker L, Ding B, Hake S. Selective trafficking of KNOTTED1 homeodomain protein and its mRNA through plasmodesmata. Science 1995, 270:1980-1983.
44. Lucas WJ, Ham BK, Kim JY. Plasmodesmata - bridging the gap between neighboring plant cells. Trends Cell Biol 2009, 19:495-503.
45. Lucas WJ, Lee JY. Plasmodesmata as a supracellular control network in plants. Nat. Rev. Mol. Cell Biol. 2004, 5:712-726.
46. Lucas WJ, Yoo BC, Kragler F. RNA as a long-distance information macromolecule in plants. Nat. Rev. Mol. Cell Biol. 2001, 2:849-857.
47. Miller ED, Plante CA, Kim KH, Brown JW, Hemenway C. Stem-loop structure in the 5' region of potato virus X genome required for plus-strand RNA accumulation. J. Mol. Biol. 1998, 284:591-608.
48. Omid A, Keilin T, Glass A, Leshkowitz D, Wolf S. Characterization of phloem-sap transcription profile in melon plants. J. Exp. Bot. 2007, 58:3645-3656.
49. Owens RA, Blackburn M, Ding B. Possible involvement of the phloem lectin in long-distance viroid movement. Mol. Plant Microbe Interact. 2001, 14:905-909.
50. Owens RA, Hammond RW. Viroid pathogenicity: one process, many faces. Viruses 2009, 1:298-316.
51. Palukaitis P. Potato spindle tuber viroid: investigation of the long-distance, intra-plant transport route. Virology 1987, 158:239-241.
52. Pant BD, Buhtz A, Kehr J, Scheible WR. MicroRNA399 is a long-distance signal for the regulation of plant phosphate homeostasis. Plant J. 2008, 53:731-738.
53. Qi Y, Ding B. Inhibition of cell growth and shoot development by a specific nucleotide sequence in a noncoding viroid RNA. Plant Cell 2003, 15:1360-1374.
54. Qi Y, Pelissier T, Itaya A, Hunt E, Wassenegger M, Ding B. Direct role of a viroid RNA motif in mediating directional RNA trafficking across a specific cellular boundary. Plant Cell 2004, 16:1741-1752.
55. Qu F, Ye X, Hou G, Sato S, Clemente TE, Morris TJ. RDR6 has a broad-spectrum but temperature-dependent antiviral defense role in Nicotiana benthamiana. J. Virol. 2005, 79:15209-15217.
56. Qu F, Ye X, Morris TJ. Arabidopsis DRB4, AGO1, AGO7, and RDR6 participate in a DCL4-initiated antiviral RNA silencing pathway negatively regulated by DCL1. Proc. Natl. Acad. Sci. USA 2008, 105:14732-14737.
57. Rodio ME, Delgado S, De Stradis A, Gómez MD, Flores R, Di Serio F. A viroid RNA with a specific structural motif inhibits chloroplast development. Plant Cell 2007, 19:3610-3626.
58. Roney JK, Khatibi PA, Westwood JH. Cross-species translocation of mRNA from host plants into the parasitic plant dodder. Plant Physiol. 2007, 143:1037-1043.
59. Ruiz-Medrano R, Xoconostle-Cázares B, Lucas WJ. Phloem long-distance transport of CmNACP mRNA: implications for supracellular regulation in plants. Development 1999, 126:4405-4419.
60. Sasaki T, Chino M, Hayashi H, Fujiwara T. Detection of several mRNA species in rice phloem sap. Plant Cell Physiol. 1998, 39:895-897.
61. Scholthof HB. Plant virus transport: motions of functional equivalence. Trends Plant Sci. 2005, 10:376-382.
62. Schwach F, Vaistij FE, Jones L, Baulcombe DC. An RNA-dependent RNA polymerase prevents meristem invasion by potato virus X and is required for the activity but not the production of a systemic silencing signal. Plant Physiol. 2005, 138:1842-1852.
63. Takeda R, Ding B. Viroid intercellular trafficking, RNA motifs, cellular factors and broad impacts. Viruses 2009, 1:210-221.
64. Taliansky M, Torrance L, Kalinina NO. Role of plant virus movement proteins. Methods Mol. Biol. 2008, 451:33-54.
65. Tsagris EM, Martínez de Alba AE, Gozmanova M, Kalantidis K. Viroids. Cell Microbiol. 2008, 10:2168-2179.
66. Turgeon R, Wolf S. Phloem transport: cellular pathways and molecular trafficking. Annu. Rev. Plant Biol. 2009, 60:207-221.
67. Vaistij FE, Jones L. Compromised virus-induced gene silencing in RDR6-deficient plants. Plant Physiol. 2009, 149:1399-1407.
68. Wassenegger M, Spieker RL, Thalmeir S, Gast FU, Riedel L, Sanger HL. A single nucleotide substitution converts potato spindle tuber viroid (PSTVd) from a noninfectious to an infectious RNA for Nicotiana tabacum. Virology 1996, 226:191-197.
69. Xoconostle-Cázares B, Xiang Y, Ruiz-Medrano R, Wang HL, Monzer J, Yoo BC, McFarland KC, Franceschi VR. Plant paralog to viral movement protein that potentiates transport of mRNA into the phloem. Science 2004, 283:94-98.
70. Yoo BC, Kragler F, Varkonyi-Gasic E, Haywood V, Archer-Evans S, Lee YM, Loughb TJ, Lucas WJ. A systemic small RNA signaling system in plants. Plant Cell 2004, 16:1979-2000.
71. Zhong X, Archual AJ, Amin AA, Ding B. A genomic map of viroid RNA motifs critical for replication and systemic trafficking. Plant Cell 2008, 20:35-47.
72. Zhong X, Leontis NB, Qian S, Itaya A, Qi Y, Boris-Lawrie K, Biao D. Tertiary structural and functional analyses of Loop E motif in viroid RNA reveal its essential role in RNA-templated RNA replication by the nuclear transcription machinery. J. Virol. 2006, 80:8566-8581.
73. Zhong X, Tao X, Stombaugh J, Leontis N, Ding B. Tertiary structure and function of an RNA motif required for plant vascular entry to initiate systemic trafficking. EMBO J. 2007, 26:3836-3846.
74. Zhu Y, Green L, Woo YM, Owens R, Ding B. Cellular basis of potato spindle tuber viroid systemic movement. Virology 2001, 279:69-77.
75. Zhu Y, Qi Y, Xun Y, Owens R, Ding B. Movement of potato spindle tuber viroid reveals regulatory points of phloem-mediated RNA traffic. Plant Physiol. 2002, 130:138-146.