Vamsapriya (Xylariaceae) re-described, with two new species and molecular sequence data

Cryptogamie, Mycologie

Volumn 35, Issue 4, 2014, Pages 339-357

  Dai, Dong Qin ^a,c,d   Bahkali, Ali H ^b   Li, Qi Rui ^g   Bhat, D Jayarama ^a,f   Wijayawardene, Nalin N ^a   Li, Wen Jing ^a   Chukeatirote, Ekachai ^a   Zhao, Rui Lin ^e   Xu, Jian Chu ^c,d   Hyde, Kevin D ^a,b,c,d  

^a MAE FAH LUANG UNIVERSITY   (Thailand)

^b KING SAUD UNIVERSITY   (Saudi Arabia)

^c East and Central Asia Regional Office   (China)

^d KUNMING INSTITUTE OF BOTANY   (China)

^e INSTITUTE OF MICROBIOLOGY   (China)

^f Azad Co Op Housing Society   (India)

^g GUIZHOU UNIVERSITY   (China)

Author keywords

Asexual morphs; conidial fungi; hyphomycetes; phylogeny; taxonomy

Indexed keywords

BAMBUSICOLA; FUNGI IMPERFECTI; HYPHOMYCETES; XYLARIACEAE; XYLARIALES;

EID: 84921665493     PISSN: 01811584     EISSN: None     Source Type: Journal    
DOI: 10.7872/crym.v35.iss4.2014.339     Document Type: Article

References (53)

1. ARIYAWANSA H.A., HAWKSWORTH D.L., HYDE K.D., MAHARACHCHIKUMBURA S.S.N., MANAMGODA D.S., THAMBUGALA K.M., UDAYANGA D., CAMPORESI E., DARANAGAMA A., JAYAWARDENA R., JONES E.B.G., LIU J.K., MCKENZIE E.H.C., PHOOKAMSAK R., SENANAYAKE I.C., SHIVAS R.G., TIAN Q. & XU C.J., 2014 - Epitypification and neotypification: guidelines with appropriate and inappropriate examples. Fungal Diversity 68 (in press)
2. BARR M.E., 1990-Podromus to nonlichenized, pyrenomycetous members of class Hymenoascomycetes. Mycotaxon 39: 43-184.
3. BARR M.E., 1994 - Notes on the Amphisphaeriaceae and related families. Mycotaxon 51: 191-224.
4. BEGOUDE B.A.D., SLIPPERS B., WINGFIELD M.J. & ROUX J., 2010 - Botryosphaeriaceae associated with Terminalia catappa in Cameroon, South Africa and Madagascar. Mycological Progress 9(1): 101-123.
5. BHAT D.J., 2010 - Fascinating Microfungi (Hyphomycetes) of Western Ghats - India. Goa: Broadway Book Centre.
6. BOONMEE S., ZHANG Y., CHOMNUNTI P., CHUKEATIROTE E., TSUI C.K.M., BAHKALI A.H. & HYDE K.D., 2011 - Revision of lignicolous Tubeufiaceae based on morphological reexamination and phylogenetic analysis. Fungal Diversity 51: 63-102.
7. CAI L., JEEWON R. & HYDE K.D., 2006 - Phylogenetic investigations of Sordariaceae based on multiple gene sequences and morphology. Mycological Research 110: 137-150.
8. CHEN J., ZHANG L.C., XING Y.M., WANG Y.Q., XING X.K., ZHANG D.W., LANG H.Q. & GUO S.X., 2013 - Diversity and Taxonomy of Endophytic Xylariaceous Fungi from Medicinal Plants of Dendrobium (Orchidaceae). PloS one 8(3): e58268.
9. CHOMNUNTI P., KOKO T.W., CHUKEATIROTE E., HYDE K.D., CAI L., JONES E.B.G., KODSUEB R., HASSAN B.A. & CHEN H., 2011 - Phylogeny of Chaetothyriaceae in northern Thailand including three new species. Fungal Diversity 51: 103-134.
10. CHOMNUNTI P., HONGSANAN S., AGUIRRE-HUDSON B., TIAN Q., PERŠOH D., DHAMI M.K., ALIAS A.S., XU J.C., LIU X.Z., STADLER M. & HYDE K.D., 2014 - The Sooty Moulds. Fungal Diversity 66: 1-36.
11. DAI D.Q., BHAT D.J., LIU J.K., CHUKEATIROTE E., ZHAO R.L. & HYDE K.D., 2012 - Bambusicola, a new genus from bamboo with asexual and sexual morphs. Cryptogamie-Mycologie 33(3): 363-379.
12. DAI D.Q., WIJAYAWARDENE N.N., BHAT D.J., CHUKEATIROTE E., ZHAO R.L., BAHKALI A.H., XU J.C. & HYDE K.D., 2014a - Pustulomyces gen. nov. accommodated in Diaporthaceae, Diaporthales, as revealed by morphology and molecular analyses. Cryptogamie-Mycologie 35(1): 63-72.
13. DAI D.Q., WIJAYAWARDENE N.N., BHAT D.J., CHUKEATIROTE E., ZHAO R.L., WANG Y., BAHKALI A.H. & HYDE K.D., 2014b - The phylogenetic placement of Eriosporella bambusicola sp. nov. in Capnodiales. Cryptogamie-Mycologie 35(1): 41-49.
14. FOURNIER J., STADLER M., HYDE K.D. & DUONG L.M., 2010 - The new genus Rostrohypoxylon and two new Annulohypoxylon species from Northern Thailand. Fungal Divers 40: 23-36.
15. GAWAS P. & BHAT D.J., 2005 - Vamsapriya indica gen. et sp. nov., a bambusicolous, synnematous fungus from India. Mycotaxon 94: 149-154.
16. GOETTEL M.S. & INGLIS G.D., 1997 - Fungi: hyphomycetes, chapter V-3. Agriculture Canada Research Centre, Canada.
17. HALL T., 2001 - BioEdit version 5.0. 6. North Carolina State University, Department of Microbiology, Raleigh, North Carolina 192.
18. HILLIS D.M. & BULL J.J., 1993 - An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42(2): 182-192.
19. HSIEH H.M., LIN C.R., FANG M.J., ROGERS J.D., FOURNIER J., LECHAT C. & JU Y.M., 2010 - Phylogenetic status of Xylaria subgenus Pseudoxylaria among taxa of the subfamily Xylarioideae (Xylariaceae) and phylogeny of the taxa involved in the subfamily. Molecular Phylogenetics and Evolution 54: 957-969.
20. HYDE K.D., FRÖHLICH J. & TAYLOR J.E., 1998 - Fungi from palms. XXXVI. Reflections on unitunicate ascomycetes with Apiospores. Sydowia 50(1): 21-80.
21. HYDE K.D., JONES E.B.G., ARIYAWANSA H.A., BOONMEE S., CHEN C., DAI D.Q., DAI Y.C., DARANAGAMA D.A., LI W.J., LI J.F., TIAN Q., SUETRONG S., UDAYANGA D., ZHAO R.L., CHUKEATIROTE E., MCKENZIE E.H.C., LIU J.C., ABDEL-WAHAB M.A., ABDEL-AZIZ F.A., BAHKALI A.H., CHATHU S. & TANAKA K.T., 2015 - Fungal Diversity Notes 1-100: Taxonomic and phylogenetic contributions to fungal species. Fungal Diversity (in processing).
22. JAKLITSCH W.M. & VOGLMAYR H., 2012 - Phylogenetic relationships of five genera of Xylariales and Rosasphaeria gen. nov. (Hypocreales). Fungal Diversity 52(1): 75-98.
23. JEEWON R., LIEW E.C. & HYDE K.D., 2002 - Phylogenetic relationships of Pestalotiopsis and allied genera inferred from ribosomal DNA sequences and morphological characters. Molecular phylogenetics and evolution 25(3): 378-392.
24. JEEWON R., LIEW E.C.Y. & HYDE K.D., 2003 - Molecular systematics of the Amphisphaeriaceae based on cladistic analyses of partial LSU rDNA gene sequences. Mycological Research 107(12): 1392-1402.
25. JAKLITSCH W.M., FOURNIER J., ROGERS J.D. & VOGLMAYR H., 2014 - Phylogenetic and taxonomic revision of Lopadostoma. Persoonia 32: 52-82.
26. KOHLI D.K. & BACHHAWAT A.K., 2003 - CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics. Nucleic acids research 31(13): 3501-3502.
27. LIU J.K., PHOOKAMSAK R., JONES E.B.G., ZHANG Y., KO-KO T.W., HU H.L., BOONMEE S., DOILOM M., CHUKEATIROTE E. & BAHKALI A.H., 2011 - Astrosphaeriella is polyphyletic, with species in Fissuroma gen. nov., and Neoastrosphaeriella gen. nov. Fungal Diversity 51: 135-154.
28. LIU J.K., PHOOKAMSAK R., DOILOM M., WIKEE S., LI Y.M., ARIYAWANSHA H.A, BOONMEE S., CHOMNUNTI P., DAI D.Q., BHAT J.D., ROMERO A.I., ZHUANG W.Y., MONKAI J., JONES E.B.G., CHUKEATIROTE E., KO-KO W.T., ZHAO Y.C., WANG Y. & HYDE K.D., 2012 - Towards a natural classification of Botryosphaeriales. Fungal Diversity 57: 149-210.
29. LUMBSCH H.T. & HUHNDORF S.M., 2010 - Myconet Volume 14. Part one. Outline of Ascomycota 2009. Part Two. Notes on Ascomycete Systematics. Nos. 4751-5113. Fieldiana Life and Earth Sciences 1: 1-64.
30. MILLER, A.N. & HUHNDORF S.M., 2005 - Multi-gene phylogenies indicate ascomal wall morphology is a better predictor of phylogenetic relationships than ascospore morphology in the Sordariales (Ascomycota, Fungi). Molecular phylogenetics and evolution 35(1): 60-75.
31. NANNFELDT J.A., 1932 - Studien über die morphologie und systematik der nichtlichenisierten inoperculaten Discomyceten. Nova Acta Regiae Societatis Scientiarum Upsaliensis 8(2): 1-368.
32. NYLANDER J.A.A., 2004 - MrModeltest 2.0. Program distributed by the author. Evolutionary Biology Centre, Uppsala University.
33. O'DONNELL K. & CIGELNIK E., 1997 - Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution 7(1): 103-116.
34. OKANE I., TOYAMA K., NAKAGIRI A., SUZUKI K., SRIKITIKULCHAI P., SIVICHAI S., HYWEL-JONES N., POTACHAROEN W. & LÆSSØE T., 2008 - Study of endophytic Xylariaceae in Thailand: diversity and taxonomy inferred from rDNA sequence analyses with saprobes forming fruit bodies in the field. Mycoscience 49(6): 359-372.
35. PAGE R.D.M., 1996 - TreeView. An application to display phylogenetic trees on personal computer. Comp Appl Biol Sci 12: 357-358.
36. PAŽOUTOVÁ S., ŠRŮTKA P., HOLUŠA J., CHUDÍČKOVÁ M. & KOLACÍK M., 2010 - The phylogenetic position of Obolarina dryophila (Xylariales). Mycological Progress 9(4): 501-507.
37. PRATIBHA J. & BHAT D.J., 2008 - New and unusual hyphomycetes from Mahabaleshwar, India. Mycotaxon 105: 423-431.
38. RANNALA B. & YANG Z., 1996 - Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. Journal of Molecular Evolution 43: 304-31
39. RONQUIST F. & HUELSENBECK J.P., 2003 - MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(12): 1572.
40. SCHOCH C.L., SUNG G.-H., LÓPEZ-GIRÁLDEZ F., TOWNSEND J.P., MIADLIKOWSKA J., HOFSTETTER V., ROBBERTSE B., MATHENY P.B., KAUFF K., WANG Z., GUEIDAN C., ANDRIE1 R.M., TRIPPE K., CIUFETTI1 L.M., WYNNS A., FRAKER E., TRIPPE K. et al., 2009 - The Ascomycota Tree of Life: A Phylum-wide Phylogeny Clarifies the Origin and Evolution of Fundamental Reproductive and Ecological Traits. Systematic Biology 58(2): 224-39.
41. SCHOCH C.L., SEIFERT K.A., HUHNDORF S., ROBERT V., SPOUGE J.L., LEVESQUE C.A., CHEN W., BOLCHACOVA E., VOIGT K. & CROUS P.W., 2011 - Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proceedings of the National Academy of Sciences 109(16): 6241-6246.
42. SEIFERT K.A., LOUIS-SEIZE G. & SAMPSON, G., 2003 - Myrothecium acadiense, a new hyphomycete isolated from the weed Tussilago farfara. Mycotaxon 87: 317-327.
43. SEIFERT K.A., MORGAN-JONES G., GAMS W. & KENDRICK B., 2011 - The Genera of Hyphomycetes. CBS-KNAW Fungal Biodiversity Centre Utrecht.
44. SPATAFORA J.W. & BLACKWE M., 1993 - Molecular systematics of unitunicate perithecial ascomycetes: the Clavicipitales-Hypocreales connection. Mycologia: 912-922.
45. SPATAFORA J.W., SUNG, G.-H., JOHNSON D., HESSE C., O'ROURKE, B., SERDANI M. & SPOTTS, R., 2006 - A five-gene phylogeny of Pezizomycotina. Mycologia 98(6): 1018-1028.
46. SPATAFORA J.W., SUNG G.-H., SUNG J.-M., HYWEL-JONES N.L. & WHITE JR J.F., 2007 - Phylogenetic evidence for an animal pathogen origin of ergot and the grass endophytes. Molecular Ecology 16(8): 1701-1711.
47. STADLER M., FOURNIER J., LÆSSØE T., CHLEBICKI A., LECHAT C., FLESSA F., RAMBOLD G. & PERŠOH D., 2010a - Chemotaxonomic and phylogenetic studies of Thamnomyces (Xylariaceae). Mycoscience 51: 189-207.
48. STADLER M., FOURNIER J., LÆSSØE T., DECOCK C., PERŠOH D. & RAMBOLD G., 2010b - Ruwenzoria, a new genus of the Xylariaceae from Central Africa. Mycological Progress 9: 169-179.
49. STADLER M., KUHNERT E., PERŠOH D. & FOURNIER J., 2013 - The Xylariaceae as model example for a unified nomenclature following the "One Fungus-One Name(1F1N) concept. Mycology 4(1): 5-21.
50. SWOFFORD D.L., 2003 - PAUP∗: phylogenetic analysis using parsimony, version 4.0 b10.
51. TANG A.M.C., JEEWON R. & HYDE K.D., 2009 - A re-evaluation of the evolutionary relationships within the Xylariaceae based on ribosomal and protein-coding gene sequences. Fungal Diversity 34: 127-155.
52. VILGALYS R. & HESTER M., 1990 - Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172(8): 4238-4246.
53. WHITE T., BRUNS T., LEE S. & TAYLOR J., 1990 - Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Academic Press, San Diego, CA, USA. p. 315-322.