Chemotaxonomic and phylogenetic studies of Thamnomyces (Xylariaceae)

Mycoscience

Volumn 51, Issue 3, 2010, Pages 189-207

  Stadler, Marc ^a,b   Fournier, Jacques ^c   Læssøe, Thomas ^d   Chlebicki, Andrzej ^e   Lechat, Christian ^f   Flessa, Fabienne ^a   Rambold, Gerhard ^a   Peršoh, Derek ^a,g  

^a UNIVERSITY OF BAYREUTH   (Germany)

^b TU DORTMUND UNIVERSITY   (Germany)

^c Rimont   (France)

^d UNIVERSITY OF COPENHAGEN   (Denmark)

^e POLISH ACADEMY OF SCIENCES   (Poland)

^f Ascofrance   (France)

^g UNIVERSITY OF MUNICH   (Germany)

Author keywords

Chemotaxonomy; Fungi; Metabolomics; Phylogeny; Xylariales

Indexed keywords

DALDINIA; ENTONAEMA; FUNGI; PHYLACIA; THAMNOMYCES; XYLARIACEAE; XYLARIALES;

EID: 77951978829     PISSN: 13403540     EISSN: 16182545     Source Type: Journal    
DOI: 10.1007/s10267-009-0028-9     Document Type: Article

References (60)

1. Allport DC, Bu'Lock JD (1958) The pigmentation and cell-wall material of Daldinia sp. J Chem Soc 1958: 4090-4094.
2. Allport DC, Bu'Lock JD (1960) Biosynthetic pathways in Daldinia concentrica. J Chem Soc 1960: 654-659.
3. Bell AA, Wheeler MH (1986) Biosynthesis and functions of fungal melanins. Annu Rev Phytopathol 24: 411-451.
4. Berkeley MJ (1856) Decades of fungi. Decades LXI-LXII. Rio Negro fungi. J Bot (Hooker) 8: 272-280.
5. Bitzer J, Köpcke B, Stadler M, Hellwig V, Ju YM, Seip S, Henkel T (2007) Accelerated dereplication of natural products, supported by reference libraries. Chimia 51: 332-338.
6. Bitzer J, Læssøe T, Fournier J, Kummer V, Decock C, Tichy HV, Piepenbring M, Peršoh D, Stadler M (2008) Affinities of Phylacia and the daldinoid Xylariaceae, inferred from chemotypes of cultures and ribosomal DNA sequences. Mycol Res 112: 251-270.
7. Butler MJ, Day AW (1998) Fungal melanins: a review. Can J Microbiol 44: 1115-1136.
8. Cooke MC (1888) Some exotic fungi. Grevillea 16(79): 69-72.
9. de Meijer AAR (2006) Preliminary list of the macromycetes from the Brazilian state of Paraná. Bol Mus Bot Municipal 68: 1-55.
10. Dennis RWG (1957) Further notes on tropical American Xylariaceae. Kew Bull 12: 297-332.
11. Dennis RWG (1961) Xylarioideae and Thamnomycetoideae of Congo. Bull Jard Bot Etat Bruxelles 31: 109-154.
12. Dennis RWG (1970) Fungus flora of Venezuela and adjacent countries. Kew Bull Additional Series 3. Her Majesty's Stationary Office, London.
13. Ehrenberg CG (1820) Fungos a viro clarissimo Adelberto de Chamisso sub auspiciis romanzoffianis in itinere circa terrarum globum collectos enumeravit novosque descripsit et pinxit Dr. C. G. Ehrenberg. In: Nees von Esenbeck (ed) Horae Physicae Berolinenses. Bonn, pp 77-104.
14. Fries EM (1830) Eclogae fungorum, praecipue ex herbariis germanorum de scriptorum. Linnaea 5: 497-553.
15. Hashimoto T, Asakawa Y (1998) Biologically active substances of Japanese inedible mushrooms. Heterocycles 47: 1110-1121.
16. Hawksworth DL (1977) Rhopalostroma, a new genus in the Xylariaceae s. l. Kew Bull 31: 421-431.
17. Hawksworth DL, Whalley AJS (1985) A new species of Rhopalostroma with a Nodulisporium anamorph from Thailand. Trans Br Mycol Soc 84: 560-562.
18. Hellwig V, Ju YM, Rogers JD, Fournier J, Stadler M (2005) Hypomiltin, a novel azaphilone from Hypoxylon hypomiltum, and chemotypes in Hypoxylon sect. Hypoxylon as inferred from analytical HPLC profiling. Mycol Prog 4: 39-54.
19. Hennings P (1897) Fungi camerunenses. Engler's Bot Jahrb 23: 539-547.
20. Hennings P (1901) Fungi camerunenses novi. III. Engler's Bot Jahrb 30: 39-57.
21. Hennings P (1902) Fungi blumenaviensis I, a cl. Alfr. Möller lecti. Hedwigia 41: 1-33.
22. Hennings P (1904) Fungi amazonici II, a cl. Ernesto Ule collecti. Hedwigia 43: 242-273.
23. Hoffmeister D, Keller NP (2007) Natural products of filamentous fungi: enzymes, genes, and their regulation. Nat Prod Rep 24: 393-416.
24. Hsieh HM, Ju YM, Rogers JD (2005) Molecular phylogeny of Hypoxylon and closely related genera. Mycologia 97: 914-923.
25. Ju YM, Rogers JD (1996) A revision of the genus Hypoxylon. Mycologia memoir no. 20. APS Press, St. Paul.
26. Ju YM, Rogers JD, San Martín F (1997) A revision of the genus Daldinia. Mycotaxon 61: 243-293.
27. Kobayasi Y (1982) Some pyrenomycetous fungi found in the Amazon district. Trans Mycol Soc Jpn 23: 111-117.
28. Læssøe T (1994) Index ascomycetum 1. Xylariaceae. Syst Ascomycetum 13: 43-112.
29. Lloyd CG (1917) Synopsis of some genera of the large pyrenomycetes. Mycol Writ 5: 1-16.
30. Lloyd CG (1920) Mycological notes 62. Mycol Writ 6: 904-944.
31. Medel R, Rogers JD, Guzman G (2006) Phylacia mexicana sp. nov. and consideration of other species with emphasis on Mexico. Mycotaxon 97: 279-290.
32. Möller A (1901) Phycomyceten und Ascomyceten, Untersuchungen aus Brasilien. Bot. Mitth. Tropen 9. Fischer, Jena.
33. Montagne JFC (1840) Séconde centurie de plantes cellulaires exotiques nouvelles. Décades III, IV et V. Ann Sci Nat Bot Sér II 13: 339-359.
34. Peláez F, González V, Platas G, Sánchez-Ballesteros J, Rubio V (2008) Molecular phylogenetic studies within the family Xylariaceae based on ribosomal DNA sequences. Fungal Divers 31: 111-134.
35. Peršoh D, Melcher M, Graf K, Fournier J, Stadler M, Rambold G (2009) Molecular and morphological evidence for the delimitation of Xylaria hypoxylon. Mycologia 101: 256-268.
36. Petrini LE, Müller E (1986) Haupt- und Nebenfruchtformen europäischer Hypoxylon-Arten (Xylariaceae, Sphaeriales) und verwandter Pilze. Mycol Helv 1: 501-627.
37. Quang DN, Hashimoto T, Nomura Y, Wollweber H, Hellwig V, Fournier J, Stadler M, Asakawa Y (2005) Cohaerins A and B, azaphilones from the fungus Hypoxylon cohaerens, and comparison of HPLC-based metabolite profiles in Hypoxylon sect. Annulata. Phytochemistry 65: 797-809.
38. Rayner RW (1970) A mycological colour chart. Commonwealth Mycological Institute, Kew and British Mycological Society.
39. Rodrigues KF, Samuels GJ (1989) Studies in the genus Phylacia (Xylariaceae). Mem N Y Bot Gard 49: 290-297.
40. Rogers JD (1979) The Xylariaceae: systematic, biological and evolutionary aspects. Mycologia 71: 1-42.
41. Rogers JD (2000) Thoughts and musings about tropical Xylariaceae. Mycol Res 104: 1412-1420.
42. Saccardo PA (1882) Sylloge fungorum omnium hucusque cognitorum. I. Patavii (Typis Seminarii).
43. Samuels GJ, Müller E (1980) Life history studies of Brazilian ascomycetes. 8. Thamnomyces chordalis (anam. Nodulisporium) and Camillea bacillum (anam. Geniculosporium) with notes on the taxonomy of the Xylariaceae. Sydowia 32: 277-292.
44. San Martín Gonzalez F, Rogers JD (1995) Rosellinia and Thamnomyces in Mexico. Mycotaxon 52: 115-127.
45. Speer EO (1980) Recherches sur la position systématique du genre Phylacia (Phylaciaceae, fam. nov.), et description de deux espéces nouvelles. Bull Trimest Soc Mycol Fr 96: 135-143.
46. Stadler M, Fournier J (2006) Pigment chemistry, taxonomy and phylogeny of the Hypoxyloideae (Xylariaceae). Rev Iberoam Micol 23: 160-170.
47. Stadler M, Wollweber H, Mühlbauer A, Henkel T, Wollweber H, Asakawa Y, Hashimoto T, Rogers JD, Ju YM, Wetzstein HG, Tichy HV (2001) Secondary metabolite profiles, genetic fingerprints and taxonomy of Daldinia and allies. Mycotaxon 77: 379-429.
48. Stadler M, Ju YM, Rogers JD (2004a) Chemotaxonomy of Entonaema, Rhopalostroma and other Xylariaceae. Mycol Res 108: 239-256.
49. Stadler M, Læssøe T, Simpson JA, Wollweber H (2004b) A survey of Daldinia species with large ascospores. Mycol Res 108: 1025-1041.
50. Stadler M, Læssøe T, Vasilyeva L (2005) The genus Pyrenomyxa and its affinities to other cleistocarpous Hypoxyloideae as inferred from morphological and chemical traits. Mycologia 97: 1129-1139.
51. Stadler M, Fournier J, Beltrán-Tejera E, Granmo A (2008a) The "red Hypoxylons" of the Northern Hemisphere. N Am Fungi 3: 73-125.
52. Stadler M, Fournier J, Læssøe T, Lechat C, Tichy HV, Piepenbring M (2008b) Recognition of hypoxyloid and xylarioid Entonaema species from a comparison of holomorphic morphology, HPLC profiles, and ribosomal DNA sequences. Mycol Progr 7: 53-73.
53. Stadler M, Fournier J, Læssøe T, Decock C, Peršoh D, Rambold G (2009) Ruwenzoria, a new genus of the Xylariaceae from Central Africa. Mycol Prog. doi: 10. 1007/s11557-009-0623-3.
54. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
55. Tang AMC, Jeewon R, Hyde KD (2009) A re-evaluation of the evolutionary relationships within the Xylariaceae based on ribosomal and protein-coding gene sequences. Fungal Divers 34: 127-155.
56. Triebel D, Persoh D, Wollweber H, Stadler M (2005) Phylogenetic relationships among Daldinia, Entonaema and Hypoxylon as inferred from ITS nrDNA sequences. Nova Hedw 80: 25-43.
57. Turner WP (1971) Fungal metabolites. Academic Press, London.
58. Turner WB, Aldridge DC (1983) Fungal metabolites II. Academic Press, London.
59. van der Gucht K (1994) The Xylariaceae of Papua New Guinea. PhD thesis. University of Gent, Belgium.
60. Watling R (1962) Thamnomyces subgenus Scopimyces. Not RBG Edinb 24: 15-18.