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Volumn 57, Issue 1, 2015, Pages 179-190

The Streptococcus mutans irvA Gene Encodes a trans-Acting Riboregulatory mRNA

Author keywords

[No Author keywords available]

Indexed keywords

GREEN FLUORESCENT PROTEIN; MESSENGER RNA; RIBONUCLEASE; RIBONUCLEASE J2; TRANS ACTING FACTOR; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; OLIGONUCLEOTIDE; PROTEIN BINDING; REPRESSOR PROTEIN;

EID: 84920382309     PISSN: 10972765     EISSN: 10974164     Source Type: Journal    
DOI: 10.1016/j.molcel.2014.11.003     Document Type: Article
Times cited : (38)

References (61)
  • 1
    • 0028858112 scopus 로고
    • Translation of RNAIII, the Staphylococcus aureus agr regulatory RNA molecule, can be activated by a 3'-end deletion
    • Balaban N., Novick R.P. Translation of RNAIII, the Staphylococcus aureus agr regulatory RNA molecule, can be activated by a 3'-end deletion. FEMS Microbiol. Lett. 1995, 133:155-161.
    • (1995) FEMS Microbiol. Lett. , vol.133 , pp. 155-161
    • Balaban, N.1    Novick, R.P.2
  • 3
    • 84866788439 scopus 로고    scopus 로고
    • The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E
    • Bandyra K.J., Said N., Pfeiffer V., Górna M.W., Vogel J., Luisi B.F. The seed region of a small RNA drives the controlled destruction of the target mRNA by the endoribonuclease RNase E. Mol. Cell 2012, 47:943-953.
    • (2012) Mol. Cell , vol.47 , pp. 943-953
    • Bandyra, K.J.1    Said, N.2    Pfeiffer, V.3    Górna, M.W.4    Vogel, J.5    Luisi, B.F.6
  • 4
    • 72049118448 scopus 로고    scopus 로고
    • Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides
    • Berghoff B.A., Glaeser J., Sharma C.M., Vogel J., Klug G. Photooxidative stress-induced and abundant small RNAs in Rhodobacter sphaeroides. Mol. Microbiol. 2009, 74:1497-1512.
    • (2009) Mol. Microbiol. , vol.74 , pp. 1497-1512
    • Berghoff, B.A.1    Glaeser, J.2    Sharma, C.M.3    Vogel, J.4    Klug, G.5
  • 5
    • 34548565848 scopus 로고    scopus 로고
    • Regulation of gbpC expression in Streptococcus mutans
    • Biswas I., Drake L., Biswas S. Regulation of gbpC expression in Streptococcus mutans. J.Bacteriol. 2007, 189:6521-6531.
    • (2007) J.Bacteriol. , vol.189 , pp. 6521-6531
    • Biswas, I.1    Drake, L.2    Biswas, S.3
  • 6
    • 75149117735 scopus 로고    scopus 로고
    • The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay in Streptococcus pyogenes
    • Bugrysheva J.V., Scott J.R. The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay in Streptococcus pyogenes. Mol. Microbiol. 2010, 75:731-743.
    • (2010) Mol. Microbiol. , vol.75 , pp. 731-743
    • Bugrysheva, J.V.1    Scott, J.R.2
  • 8
    • 84867577054 scopus 로고    scopus 로고
    • An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs
    • Chao Y., Papenfort K., Reinhardt R., Sharma C.M., Vogel J. An atlas of Hfq-bound transcripts reveals 3' UTRs as a genomic reservoir of regulatory small RNAs. EMBO J. 2012, 31:4005-4019.
    • (2012) EMBO J. , vol.31 , pp. 4005-4019
    • Chao, Y.1    Papenfort, K.2    Reinhardt, R.3    Sharma, C.M.4    Vogel, J.5
  • 9
    • 77955412028 scopus 로고    scopus 로고
    • What is the role of RNase J in mRNA turnover?
    • Condon C. What is the role of RNase J in mRNA turnover?. RNA Biol. 2010, 7:316-321.
    • (2010) RNA Biol. , vol.7 , pp. 316-321
    • Condon, C.1
  • 13
    • 84875457350 scopus 로고    scopus 로고
    • Bacterial small RNA-based negative regulation: Hfq and its accomplices
    • De Lay N., Schu D.J., Gottesman S. Bacterial small RNA-based negative regulation: Hfq and its accomplices. J.Biol. Chem. 2013, 288:7996-8003.
    • (2013) J.Biol. Chem. , vol.288 , pp. 7996-8003
    • De Lay, N.1    Schu, D.J.2    Gottesman, S.3
  • 14
    • 67349095027 scopus 로고    scopus 로고
    • Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA
    • Desnoyers G., Morissette A., Prévost K., Massé E. Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA. EMBO J. 2009, 28:1551-1561.
    • (2009) EMBO J. , vol.28 , pp. 1551-1561
    • Desnoyers, G.1    Morissette, A.2    Prévost, K.3    Massé, E.4
  • 15
    • 17844361922 scopus 로고    scopus 로고
    • Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E
    • Even S., Pellegrini O., Zig L., Labas V., Vinh J., Bréchemmier-Baey D., Putzer H. Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E. Nucleic Acids Res. 2005, 33:2141-2152.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2141-2152
    • Even, S.1    Pellegrini, O.2    Zig, L.3    Labas, V.4    Vinh, J.5    Bréchemmier-Baey, D.6    Putzer, H.7
  • 16
    • 84877989998 scopus 로고    scopus 로고
    • Bacillus subtilis mutants with knockouts of the genes encoding ribonucleases RNase Y and RNase J1 are viable, with major defects in cell morphology, sporulation, and competence
    • Figaro S., Durand S., Gilet L., Cayet N., Sachse M., Condon C. Bacillus subtilis mutants with knockouts of the genes encoding ribonucleases RNase Y and RNase J1 are viable, with major defects in cell morphology, sporulation, and competence. J.Bacteriol. 2013, 195:2340-2348.
    • (2013) J.Bacteriol. , vol.195 , pp. 2340-2348
    • Figaro, S.1    Durand, S.2    Gilet, L.3    Cayet, N.4    Sachse, M.5    Condon, C.6
  • 17
    • 69749123311 scopus 로고    scopus 로고
    • Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target
    • Figueroa-Bossi N., Valentini M., Malleret L., Fiorini F., Bossi L. Caught at its own game: regulatory small RNA inactivated by an inducible transcript mimicking its target. Genes Dev. 2009, 23:2004-2015.
    • (2009) Genes Dev. , vol.23 , pp. 2004-2015
    • Figueroa-Bossi, N.1    Valentini, M.2    Malleret, L.3    Fiorini, F.4    Bossi, L.5
  • 18
    • 71549126189 scopus 로고    scopus 로고
    • Activation of gene expression by small RNA
    • Fröhlich K.S., Vogel J. Activation of gene expression by small RNA. Curr. Opin. Microbiol. 2009, 12:674-682.
    • (2009) Curr. Opin. Microbiol. , vol.12 , pp. 674-682
    • Fröhlich, K.S.1    Vogel, J.2
  • 19
    • 84887826391 scopus 로고    scopus 로고
    • A small RNA activates CFA synthase by isoform-specific mRNA stabilization
    • Fröhlich K.S., Papenfort K., Fekete A., Vogel J. A small RNA activates CFA synthase by isoform-specific mRNA stabilization. EMBO J. 2013, 32:2963-2979.
    • (2013) EMBO J. , vol.32 , pp. 2963-2979
    • Fröhlich, K.S.1    Papenfort, K.2    Fekete, A.3    Vogel, J.4
  • 23
    • 84904362234 scopus 로고    scopus 로고
    • MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein
    • Guo M.S., Updegrove T.B., Gogol E.B., Shabalina S.A., Gross C.A., Storz G. MicL, a new σE-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein. Genes Dev. 2014, 28:1620-1634.
    • (2014) Genes Dev. , vol.28 , pp. 1620-1634
    • Guo, M.S.1    Updegrove, T.B.2    Gogol, E.B.3    Shabalina, S.A.4    Gross, C.A.5    Storz, G.6
  • 25
    • 84896716623 scopus 로고    scopus 로고
    • Inverse regulation of Fe- and Ni-containing SOD genes by a Fur family regulator Nur through small RNA processed from 3'UTR of the sodF mRNA
    • Kim H.M., Shin J.H., Cho Y.B., Roe J.H. Inverse regulation of Fe- and Ni-containing SOD genes by a Fur family regulator Nur through small RNA processed from 3'UTR of the sodF mRNA. Nucleic Acids Res. 2014, 42:2003-2014.
    • (2014) Nucleic Acids Res. , vol.42 , pp. 2003-2014
    • Kim, H.M.1    Shin, J.H.2    Cho, Y.B.3    Roe, J.H.4
  • 26
    • 84865165883 scopus 로고    scopus 로고
    • RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases
    • Lehnik-Habrink M., Lewis R.J., Mäder U., Stülke J. RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases. Mol. Microbiol. 2012, 84:1005-1017.
    • (2012) Mol. Microbiol. , vol.84 , pp. 1005-1017
    • Lehnik-Habrink, M.1    Lewis, R.J.2    Mäder, U.3    Stülke, J.4
  • 27
    • 79954997860 scopus 로고    scopus 로고
    • Mechanism of adhesion maintenance by methionine sulphoxide reductase in Streptococcus gordonii
    • Lei Y., Zhang Y., Guenther B.D., Kreth J., Herzberg M.C. Mechanism of adhesion maintenance by methionine sulphoxide reductase in Streptococcus gordonii. Mol. Microbiol. 2011, 80:726-738.
    • (2011) Mol. Microbiol. , vol.80 , pp. 726-738
    • Lei, Y.1    Zhang, Y.2    Guenther, B.D.3    Kreth, J.4    Herzberg, M.C.5
  • 30
    • 0038381510 scopus 로고    scopus 로고
    • The trypanosomatid signal recognition particle consists of two RNA molecules, a 7SL RNA homologue and a novel tRNA-like molecule
    • Liu L., Ben-Shlomo H., Xu Y.X., Stern M.Z., Goncharov I., Zhang Y., Michaeli S. The trypanosomatid signal recognition particle consists of two RNA molecules, a 7SL RNA homologue and a novel tRNA-like molecule. J.Biol. Chem. 2003, 278:18271-18280.
    • (2003) J.Biol. Chem. , vol.278 , pp. 18271-18280
    • Liu, L.1    Ben-Shlomo, H.2    Xu, Y.X.3    Stern, M.Z.4    Goncharov, I.5    Zhang, Y.6    Michaeli, S.7
  • 32
    • 75649119339 scopus 로고    scopus 로고
    • 'RNA walk' a novel approach to study RNA-RNA interactions between a small RNA and its target
    • Lustig Y., Wachtel C., Safro M., Liu L., Michaeli S. 'RNA walk' a novel approach to study RNA-RNA interactions between a small RNA and its target. Nucleic Acids Res. 2010, 38:e5.
    • (2010) Nucleic Acids Res. , vol.38 , pp. e5
    • Lustig, Y.1    Wachtel, C.2    Safro, M.3    Liu, L.4    Michaeli, S.5
  • 33
    • 33846973663 scopus 로고    scopus 로고
    • Glucan-binding proteins are essential for shaping Streptococcus mutans biofilm architecture
    • Lynch D.J., Fountain T.L., Mazurkiewicz J.E., Banas J.A. Glucan-binding proteins are essential for shaping Streptococcus mutans biofilm architecture. FEMS Microbiol. Lett. 2007, 268:158-165.
    • (2007) FEMS Microbiol. Lett. , vol.268 , pp. 158-165
    • Lynch, D.J.1    Fountain, T.L.2    Mazurkiewicz, J.E.3    Banas, J.A.4
  • 34
    • 51649091711 scopus 로고    scopus 로고
    • MRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale
    • Mäder U., Zig L., Kretschmer J., Homuth G., Putzer H. mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale. Mol. Microbiol. 2008, 70:183-196.
    • (2008) Mol. Microbiol. , vol.70 , pp. 183-196
    • Mäder, U.1    Zig, L.2    Kretschmer, J.3    Homuth, G.4    Putzer, H.5
  • 37
    • 23744455757 scopus 로고    scopus 로고
    • LuxS controls bacteriocin production in Streptococcus mutans through a novel regulatory component
    • Merritt J., Kreth J., Shi W., Qi F. LuxS controls bacteriocin production in Streptococcus mutans through a novel regulatory component. Mol. Microbiol. 2005, 57:960-969.
    • (2005) Mol. Microbiol. , vol.57 , pp. 960-969
    • Merritt, J.1    Kreth, J.2    Shi, W.3    Qi, F.4
  • 38
    • 55749086678 scopus 로고    scopus 로고
    • Characterization of irvR, a novel regulator of the irvA-dependent pathway required for genetic competence and dextran-dependent aggregation in Streptococcus mutans
    • Niu G., Okinaga T., Zhu L., Banas J., Qi F., Merritt J. Characterization of irvR, a novel regulator of the irvA-dependent pathway required for genetic competence and dextran-dependent aggregation in Streptococcus mutans. J.Bacteriol. 2008, 190:7268-7274.
    • (2008) J.Bacteriol. , vol.190 , pp. 7268-7274
    • Niu, G.1    Okinaga, T.2    Zhu, L.3    Banas, J.4    Qi, F.5    Merritt, J.6
  • 39
    • 77949342122 scopus 로고    scopus 로고
    • The Streptococcus mutans IrvR repressor is a CI-like regulator that functions through autocleavage and Clp-dependent proteolysis
    • Niu G., Okinaga T., Qi F., Merritt J. The Streptococcus mutans IrvR repressor is a CI-like regulator that functions through autocleavage and Clp-dependent proteolysis. J.Bacteriol. 2010, 192:1586-1595.
    • (2010) J.Bacteriol. , vol.192 , pp. 1586-1595
    • Niu, G.1    Okinaga, T.2    Qi, F.3    Merritt, J.4
  • 41
    • 84876234571 scopus 로고    scopus 로고
    • Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis
    • Papenfort K., Sun Y., Miyakoshi M., Vanderpool C.K., Vogel J. Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis. Cell 2013, 153:426-437.
    • (2013) Cell , vol.153 , pp. 426-437
    • Papenfort, K.1    Sun, Y.2    Miyakoshi, M.3    Vanderpool, C.K.4    Vogel, J.5
  • 42
    • 68249156618 scopus 로고    scopus 로고
    • Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation
    • Pfeiffer V., Papenfort K., Lucchini S., Hinton J.C., Vogel J. Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. Nat. Struct. Mol. Biol. 2009, 16:840-846.
    • (2009) Nat. Struct. Mol. Biol. , vol.16 , pp. 840-846
    • Pfeiffer, V.1    Papenfort, K.2    Lucchini, S.3    Hinton, J.C.4    Vogel, J.5
  • 43
    • 84899952321 scopus 로고    scopus 로고
    • Interplay of transcriptional and small RNA-dependent control mechanisms regulates chitosugar uptake in Escherichia coli and Salmonella
    • Plumbridge J., Bossi L., Oberto J., Wade J.T., Figueroa-Bossi N. Interplay of transcriptional and small RNA-dependent control mechanisms regulates chitosugar uptake in Escherichia coli and Salmonella. Mol. Microbiol. 2014, 92:648-658.
    • (2014) Mol. Microbiol. , vol.92 , pp. 648-658
    • Plumbridge, J.1    Bossi, L.2    Oberto, J.3    Wade, J.T.4    Figueroa-Bossi, N.5
  • 44
    • 4644237189 scopus 로고    scopus 로고
    • Fast and effective prediction of microRNA/target duplexes
    • Rehmsmeier M., Steffen P., Hochsmann M., Giegerich R. Fast and effective prediction of microRNA/target duplexes. RNA 2004, 10:1507-1517.
    • (2004) RNA , vol.10 , pp. 1507-1517
    • Rehmsmeier, M.1    Steffen, P.2    Hochsmann, M.3    Giegerich, R.4
  • 45
    • 84867056798 scopus 로고    scopus 로고
    • Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA
    • Rice J.B., Balasubramanian D., Vanderpool C.K. Small RNA binding-site multiplicity involved in translational regulation of a polycistronic mRNA. Proc. Natl. Acad. Sci. USA 2012, 109:E2691-E2698.
    • (2012) Proc. Natl. Acad. Sci. USA , vol.109 , pp. E2691-E2698
    • Rice, J.B.1    Balasubramanian, D.2    Vanderpool, C.K.3
  • 46
    • 36549029160 scopus 로고    scopus 로고
    • RivR and the small RNA RivX: the missing links between the CovR regulatory cascade and the Mga regulon
    • Roberts S.A., Scott J.R. RivR and the small RNA RivX: the missing links between the CovR regulatory cascade and the Mga regulon. Mol. Microbiol. 2007, 66:1506-1522.
    • (2007) Mol. Microbiol. , vol.66 , pp. 1506-1522
    • Roberts, S.A.1    Scott, J.R.2
  • 47
    • 73849103559 scopus 로고    scopus 로고
    • An overview of RNAs with regulatory functions in gram-positive bacteria
    • Romby P., Charpentier E. An overview of RNAs with regulatory functions in gram-positive bacteria. Cell. Mol. Life Sci. 2010, 67:217-237.
    • (2010) Cell. Mol. Life Sci. , vol.67 , pp. 217-237
    • Romby, P.1    Charpentier, E.2
  • 48
    • 0031036878 scopus 로고    scopus 로고
    • Cloning and sequence analysis of the gbpC gene encoding a novel glucan-binding protein of Streptococcus mutans
    • Sato Y., Yamamoto Y., Kizaki H. Cloning and sequence analysis of the gbpC gene encoding a novel glucan-binding protein of Streptococcus mutans. Infect. Immun. 1997, 65:668-675.
    • (1997) Infect. Immun. , vol.65 , pp. 668-675
    • Sato, Y.1    Yamamoto, Y.2    Kizaki, H.3
  • 49
    • 0034572447 scopus 로고    scopus 로고
    • Xylitol-induced elevated expression of the gbpC gene in a population of Streptococcus mutans cells
    • Sato Y., Yamamoto Y., Kizaki H. Xylitol-induced elevated expression of the gbpC gene in a population of Streptococcus mutans cells. Eur. J. Oral Sci. 2000, 108:538-545.
    • (2000) Eur. J. Oral Sci. , vol.108 , pp. 538-545
    • Sato, Y.1    Yamamoto, Y.2    Kizaki, H.3
  • 50
    • 0036060356 scopus 로고    scopus 로고
    • Streptococcus mutans binding to solid phase dextran mediated by the glucan-binding protein C
    • Sato Y., Senpuku H., Okamoto K., Hanada N., Kizaki H. Streptococcus mutans binding to solid phase dextran mediated by the glucan-binding protein C. Oral Microbiol. Immunol. 2002, 17:252-256.
    • (2002) Oral Microbiol. Immunol. , vol.17 , pp. 252-256
    • Sato, Y.1    Senpuku, H.2    Okamoto, K.3    Hanada, N.4    Kizaki, H.5
  • 51
    • 0036194029 scopus 로고    scopus 로고
    • Clostridial VirR/VirS regulon involves a regulatory RNA molecule for expression of toxins
    • Shimizu T., Yaguchi H., Ohtani K., Banu S., Hayashi H. Clostridial VirR/VirS regulon involves a regulatory RNA molecule for expression of toxins. Mol. Microbiol. 2002, 43:257-265.
    • (2002) Mol. Microbiol. , vol.43 , pp. 257-265
    • Shimizu, T.1    Yaguchi, H.2    Ohtani, K.3    Banu, S.4    Hayashi, H.5
  • 53
    • 80053019485 scopus 로고    scopus 로고
    • Regulation by small RNAs in bacteria: expanding frontiers
    • Storz G., Vogel J., Wassarman K.M. Regulation by small RNAs in bacteria: expanding frontiers. Mol. Cell 2011, 43:880-891.
    • (2011) Mol. Cell , vol.43 , pp. 880-891
    • Storz, G.1    Vogel, J.2    Wassarman, K.M.3
  • 54
    • 11844292767 scopus 로고    scopus 로고
    • MRNA helicase activity of the ribosome
    • Takyar S., Hickerson R.P., Noller H.F. mRNA helicase activity of the ribosome. Cell 2005, 120:49-58.
    • (2005) Cell , vol.120 , pp. 49-58
    • Takyar, S.1    Hickerson, R.P.2    Noller, H.F.3
  • 56
    • 33746579752 scopus 로고    scopus 로고
    • IrvA-dependent and IrvA-independent pathways for mutacin gene regulation in Streptococcus mutans
    • Tsang P., Merritt J., Shi W., Qi F. IrvA-dependent and IrvA-independent pathways for mutacin gene regulation in Streptococcus mutans. FEMS Microbiol. Lett. 2006, 261:231-234.
    • (2006) FEMS Microbiol. Lett. , vol.261 , pp. 231-234
    • Tsang, P.1    Merritt, J.2    Shi, W.3    Qi, F.4
  • 59
    • 38049115217 scopus 로고    scopus 로고
    • A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide
    • Wadler C.S., Vanderpool C.K. A dual function for a bacterial small RNA: SgrS performs base pairing-dependent regulation and encodes a functional polypeptide. Proc. Natl. Acad. Sci. USA 2007, 104:20454-20459.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 20454-20459
    • Wadler, C.S.1    Vanderpool, C.K.2
  • 60
    • 80053574171 scopus 로고    scopus 로고
    • Mirtrons: microRNA biogenesis via splicing
    • Westholm J.O., Lai E.C. Mirtrons: microRNA biogenesis via splicing. Biochimie 2011, 93:1897-1904.
    • (2011) Biochimie , vol.93 , pp. 1897-1904
    • Westholm, J.O.1    Lai, E.C.2
  • 61
    • 70449339397 scopus 로고    scopus 로고
    • Role of the Streptococcus mutans irvA gene in GbpC-independent, dextran-dependent aggregation and biofilm formation
    • Zhu M., Ajdić D., Liu Y., Lynch D., Merritt J., Banas J.A. Role of the Streptococcus mutans irvA gene in GbpC-independent, dextran-dependent aggregation and biofilm formation. Appl. Environ. Microbiol. 2009, 75:7037-7043.
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 7037-7043
    • Zhu, M.1    Ajdić, D.2    Liu, Y.3    Lynch, D.4    Merritt, J.5    Banas, J.A.6


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