-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW & Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
84877256074
-
Compartmentalization of metabolic pathways in yeast mitochondria improves the production of branched-chain alcohols
-
Avalos JL, Fink GR & Stephanopoulos G (2013) Compartmentalization of metabolic pathways in yeast mitochondria improves the production of branched-chain alcohols. Nat Biotechnol 31: 335-341.
-
(2013)
Nat Biotechnol
, vol.31
, pp. 335-341
-
-
Avalos, J.L.1
Fink, G.R.2
Stephanopoulos, G.3
-
3
-
-
0023876383
-
Yeast LEU4 encodes mitochondrial and non-mitochondrial forms of alpha-isopropylmalate synthase
-
Beltzer JP, Morris SR & Kohlhaw GB (1988) Yeast LEU4 encodes mitochondrial and non-mitochondrial forms of alpha-isopropylmalate synthase. J Biol Chem 263: 368-374.
-
(1988)
J Biol Chem
, vol.263
, pp. 368-374
-
-
Beltzer, J.P.1
Morris, S.R.2
Kohlhaw, G.B.3
-
4
-
-
15044342010
-
Metabolic-flux and network analysis in fourteen hemiascomycetous yeasts
-
Blank LM, Lehmbeck F & Sauer U (2005) Metabolic-flux and network analysis in fourteen hemiascomycetous yeasts. FEMS Yeast Res 5: 545-558.
-
(2005)
FEMS Yeast Res
, vol.5
, pp. 545-558
-
-
Blank, L.M.1
Lehmbeck, F.2
Sauer, U.3
-
5
-
-
21644460849
-
Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures
-
Boer VM, Daran J-M, Almering MJH, de Winde JH & Pronk JT (2005) Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures. FEMS Yeast Res 5: 885-897.
-
(2005)
FEMS Yeast Res
, vol.5
, pp. 885-897
-
-
Boer, V.M.1
Daran, J.-M.2
Almering, M.J.H.3
de Winde, J.H.4
Pronk, J.T.5
-
6
-
-
0017184389
-
A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
-
Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254.
-
(1976)
Anal Biochem
, vol.72
, pp. 248-254
-
-
Bradford, M.M.1
-
7
-
-
74049130331
-
Macromolecular and elemental composition analysis and extracellular metabolite balances of Pichia pastoris growing at different oxygen levels
-
Carnicer M, Baumann K, Toplitz I, Sanchez-Ferrando F, Mattanovich D, Ferrer P & Albiol J (2009) Macromolecular and elemental composition analysis and extracellular metabolite balances of Pichia pastoris growing at different oxygen levels. Microb Cell Fact 8: 65.
-
(2009)
Microb Cell Fact
, vol.8
, pp. 65
-
-
Carnicer, M.1
Baumann, K.2
Toplitz, I.3
Sanchez-Ferrando, F.4
Mattanovich, D.5
Ferrer, P.6
Albiol, J.7
-
8
-
-
0034039865
-
Identification by functional analysis of the gene encoding alpha-isopropylmalate synthase II (LEU9) in Saccharomyces cerevisiae
-
Casalone E, Barberio C, Cavalieri D & Polsinelli M (2000) Identification by functional analysis of the gene encoding alpha-isopropylmalate synthase II (LEU9) in Saccharomyces cerevisiae. Yeast 16: 539-545.
-
(2000)
Yeast
, vol.16
, pp. 539-545
-
-
Casalone, E.1
Barberio, C.2
Cavalieri, D.3
Polsinelli, M.4
-
9
-
-
84859199206
-
Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials
-
Caspeta L, Shoaie S, Agren R, Nookaew I & Nielsen J (2012) Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials. BMC Syst Biol 6: 24.
-
(2012)
BMC Syst Biol
, vol.6
, pp. 24
-
-
Caspeta, L.1
Shoaie, S.2
Agren, R.3
Nookaew, I.4
Nielsen, J.5
-
10
-
-
0032982287
-
Trifluoroleucine resistance and regulation of alpha-isopropyl malate synthase in Saccharomyces cerevisiae
-
Cavalieri D, Casalone E, Bendoni B, Fia G, Polsinelli M & Barberio C (1999) Trifluoroleucine resistance and regulation of alpha-isopropyl malate synthase in Saccharomyces cerevisiae. Mol Gen Genet 261: 152-160.
-
(1999)
Mol Gen Genet
, vol.261
, pp. 152-160
-
-
Cavalieri, D.1
Casalone, E.2
Bendoni, B.3
Fia, G.4
Polsinelli, M.5
Barberio, C.6
-
11
-
-
0021867360
-
Total deletion of yeast LEU4: further evidence for a second alpha-isopropylmalate synthase and evidence for tight LEU4-MET4 linkage
-
Chang LF, Gatzek PR & Kohlhaw GB (1985) Total deletion of yeast LEU4: further evidence for a second alpha-isopropylmalate synthase and evidence for tight LEU4-MET4 linkage. Gene 33: 333-339.
-
(1985)
Gene
, vol.33
, pp. 333-339
-
-
Chang, L.F.1
Gatzek, P.R.2
Kohlhaw, G.B.3
-
12
-
-
84858588614
-
Saccharomyces Genome Database: the genomics resource of budding yeast
-
Cherry JM, Hong EL, Amundsen C et al. (2012) Saccharomyces Genome Database: the genomics resource of budding yeast. Nucleic Acids Res 40: D700-D705.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D700-D705
-
-
Cherry, J.M.1
Hong, E.L.2
Amundsen, C.3
-
13
-
-
77954040575
-
Genome-scale metabolic reconstruction and in silico analysis of methylotrophic yeast Pichia pastoris for strain improvement
-
Chung BK, Selvarasu S, Andrea C, Ryu J, Lee H, Ahn J & Lee DY (2010) Genome-scale metabolic reconstruction and in silico analysis of methylotrophic yeast Pichia pastoris for strain improvement. Microb Cell Fact 9: 50.
-
(2010)
Microb Cell Fact
, vol.9
, pp. 50
-
-
Chung, B.K.1
Selvarasu, S.2
Andrea, C.3
Ryu, J.4
Lee, H.5
Ahn, J.6
Lee, D.Y.7
-
14
-
-
84874109084
-
Metabolic reconstruction and flux analysis of industrial Pichia yeasts
-
Chung BK, Lakshmanan M, Klement M, Ching CB & Lee DY (2013) Metabolic reconstruction and flux analysis of industrial Pichia yeasts. Appl Microbiol Biotechnol 97: 1865-1873.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 1865-1873
-
-
Chung, B.K.1
Lakshmanan, M.2
Klement, M.3
Ching, C.B.4
Lee, D.Y.5
-
15
-
-
79251536260
-
Saccharomyces cerevisiae Bat1 and Bat2 aminotransferases have functionally diverged from the ancestral-like Kluyveromyces lactis orthologous enzyme
-
Colón M, Hernández F, López K, Quezada H, González J, López G, Aranda C & González A (2011) Saccharomyces cerevisiae Bat1 and Bat2 aminotransferases have functionally diverged from the ancestral-like Kluyveromyces lactis orthologous enzyme. PLoS ONE 6: e16099.
-
(2011)
PLoS ONE
, vol.6
, pp. e16099
-
-
Colón, M.1
Hernández, F.2
López, K.3
Quezada, H.4
González, J.5
López, G.6
Aranda, C.7
González, A.8
-
16
-
-
0029845067
-
Cloning of the ASN1 and ASN2 genes encoding asparagine synthetases in Saccharomyces cerevisiae: differential regulation by the CCAAT-box-binding factor
-
Dang V-D, Valens M, Bolotin-Fukuhara M & Daignan-Fornier B (1996) Cloning of the ASN1 and ASN2 genes encoding asparagine synthetases in Saccharomyces cerevisiae: differential regulation by the CCAAT-box-binding factor. Mol Microbiol 22: 681-692.
-
(1996)
Mol Microbiol
, vol.22
, pp. 681-692
-
-
Dang, V.-D.1
Valens, M.2
Bolotin-Fukuhara, M.3
Daignan-Fornier, B.4
-
17
-
-
0014559421
-
Studies on the regulation and localization of the glyoxylate cycle enzymes in Saccharomyces cerevisiae
-
Dduntze W, Neumann D, Atzpodien W, Holzer H & Gancedo JM (1969) Studies on the regulation and localization of the glyoxylate cycle enzymes in Saccharomyces cerevisiae. Eur J Biochem 10: 83-89.
-
(1969)
Eur J Biochem
, vol.10
, pp. 83-89
-
-
Dduntze, W.1
Neumann, D.2
Atzpodien, W.3
Holzer, H.4
Gancedo, J.M.5
-
18
-
-
3843128481
-
Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
-
Duarte NC, Herrgard MJ & Palsson BO (2004) Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model. Genome Res 14: 1298-1309.
-
(2004)
Genome Res
, vol.14
, pp. 1298-1309
-
-
Duarte, N.C.1
Herrgard, M.J.2
Palsson, B.O.3
-
19
-
-
77953754620
-
Yeast evolutionary genomics
-
Dujon B (2010) Yeast evolutionary genomics. Nat Rev Genet 11: 512-524.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 512-524
-
-
Dujon, B.1
-
20
-
-
0029786833
-
Two yeast homologs of ECA39, a target for c-myc regulation, code for cytosolic and mitochondrial branched-chain amino acid aminotransferases
-
Eden A, Simchen G & Benvenisty N (1996) Two yeast homologs of ECA39, a target for c-myc regulation, code for cytosolic and mitochondrial branched-chain amino acid aminotransferases. J Biol Chem 271: 20242-20245.
-
(1996)
J Biol Chem
, vol.271
, pp. 20242-20245
-
-
Eden, A.1
Simchen, G.2
Benvenisty, N.3
-
21
-
-
34248531753
-
Locating proteins in the cell using TargetP, SignalP and related tools
-
Emanuelsson O, Brunak S, von Heijne G & Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2: 953-971.
-
(2007)
Nat Protoc
, vol.2
, pp. 953-971
-
-
Emanuelsson, O.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
22
-
-
84873496260
-
The roles of whole-genome and small-scale duplications in the functional specialization of Saccharomyces cerevisiae genes
-
Fares MA, Keane OM, Toft C, Carretero-Paulet L & Jones GW (2013) The roles of whole-genome and small-scale duplications in the functional specialization of Saccharomyces cerevisiae genes. PLoS Genet 9: e1003176.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003176
-
-
Fares, M.A.1
Keane, O.M.2
Toft, C.3
Carretero-Paulet, L.4
Jones, G.W.5
-
23
-
-
58549108388
-
Reconstruction of biochemical networks in microorganisms
-
Feist AM, Herrgard MJ, Thiele I, Reed JL & Palsson BO (2009) Reconstruction of biochemical networks in microorganisms. Nat Rev Microbiol 7: 129-143.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 129-143
-
-
Feist, A.M.1
Herrgard, M.J.2
Thiele, I.3
Reed, J.L.4
Palsson, B.O.5
-
24
-
-
33845452848
-
A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis
-
Fitzpatrick D, Logue M, Stajich J & Butler G (2006) A fungal phylogeny based on 42 complete genomes derived from supertree and combined gene analysis. BMC Evol Biol 6: 99.
-
(2006)
BMC Evol Biol
, vol.6
, pp. 99
-
-
Fitzpatrick, D.1
Logue, M.2
Stajich, J.3
Butler, G.4
-
25
-
-
0037313750
-
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
-
Förster J, Famili I, Fu P, Palsson BO & Nielsen J (2003) Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network. Genome Res 13: 244-253.
-
(2003)
Genome Res
, vol.13
, pp. 244-253
-
-
Förster, J.1
Famili, I.2
Fu, P.3
Palsson, B.O.4
Nielsen, J.5
-
26
-
-
84873363881
-
Pichia pastoris: protein production host and model organism for biomedical research
-
Gasser B, Prielhofer R, Marx H, Maurer M, Nocon J, Steiger M, Puxbaum V, Sauer M & Mattanovich D (2013) Pichia pastoris: protein production host and model organism for biomedical research. Future Microbiol 8: 191-208.
-
(2013)
Future Microbiol
, vol.8
, pp. 191-208
-
-
Gasser, B.1
Prielhofer, R.2
Marx, H.3
Maurer, M.4
Nocon, J.5
Steiger, M.6
Puxbaum, V.7
Sauer, M.8
Mattanovich, D.9
-
27
-
-
0028801765
-
Metabolic load and heterologous gene expression
-
Glick BR (1995) Metabolic load and heterologous gene expression. Biotechnol Adv 13: 247-261.
-
(1995)
Biotechnol Adv
, vol.13
, pp. 247-261
-
-
Glick, B.R.1
-
29
-
-
21244466810
-
Amino acid supplementation improves heterologous protein production by Saccharomyces cerevisiae in defined medium
-
Görgens JF, Zyl WH, Knoetze JH & Hahn-Hägerdal B (2005) Amino acid supplementation improves heterologous protein production by Saccharomyces cerevisiae in defined medium. Appl Microbiol Biotechnol 67: 684-691.
-
(2005)
Appl Microbiol Biotechnol
, vol.67
, pp. 684-691
-
-
Görgens, J.F.1
Zyl, W.H.2
Knoetze, J.H.3
Hahn-Hägerdal, B.4
-
30
-
-
27944461023
-
Role of cultivation media in the development of yeast strains for large scale industrial use
-
Hahn-Hagerdal B, Karhumaa K, Larsson C, Gorwa-Grauslund M, Gorgens J & van Zyl W (2005) Role of cultivation media in the development of yeast strains for large scale industrial use. Microb Cell Fact 4: 31.
-
(2005)
Microb Cell Fact
, vol.4
, pp. 31
-
-
Hahn-Hagerdal, B.1
Karhumaa, K.2
Larsson, C.3
Gorwa-Grauslund, M.4
Gorgens, J.5
van Zyl, W.6
-
31
-
-
84861744439
-
Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network
-
Heavner BD, Smallbone K, Barker B, Mendes P & Walker LP (2012) Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network. BMC Syst Biol 6: 1-13.
-
(2012)
BMC Syst Biol
, vol.6
, pp. 1-13
-
-
Heavner, B.D.1
Smallbone, K.2
Barker, B.3
Mendes, P.4
Walker, L.P.5
-
32
-
-
79959227594
-
Carbon metabolism limits recombinant protein production in Pichia pastoris
-
Heyland J, Fu J, Blank LM & Schmid A (2011) Carbon metabolism limits recombinant protein production in Pichia pastoris. Biotechnol Bioeng 108: 1942-1953.
-
(2011)
Biotechnol Bioeng
, vol.108
, pp. 1942-1953
-
-
Heyland, J.1
Fu, J.2
Blank, L.M.3
Schmid, A.4
-
33
-
-
34547560275
-
WoLF PSORT: protein localization predictor
-
Horton P, Park KJ, Obayashi T, Fujita N, Harada H, Adams-Collier CJ & Nakai K (2007) WoLF PSORT: protein localization predictor. Nucleic Acids Res 35: W585-W587.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W585-W587
-
-
Horton, P.1
Park, K.J.2
Obayashi, T.3
Fujita, N.4
Harada, H.5
Adams-Collier, C.J.6
Nakai, K.7
-
34
-
-
84860649085
-
Metabolic flux profiling of recombinant protein secreting Pichia pastoris growing on glucose:methanol mixtures
-
Jordà J, Jouhten P, Camara E, Maaheimo H, Albiol J & Ferrer P (2012) Metabolic flux profiling of recombinant protein secreting Pichia pastoris growing on glucose:methanol mixtures. Microb Cell Fact 11: 57.
-
(2012)
Microb Cell Fact
, vol.11
, pp. 57
-
-
Jordà, J.1
Jouhten, P.2
Camara, E.3
Maaheimo, H.4
Albiol, J.5
Ferrer, P.6
-
35
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M & Goto S (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
36
-
-
84858983547
-
KEGG for integration and interpretation of large-scale molecular data sets
-
Kanehisa M, Goto S, Sato Y, Furumichi M & Tanabe M (2012) KEGG for integration and interpretation of large-scale molecular data sets. Nucleic Acids Res 40: D109-D114.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D109-D114
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Furumichi, M.4
Tanabe, M.5
-
37
-
-
84891760956
-
Data, information, knowledge and principle: back to metabolism in KEGG
-
Kanehisa M, Goto S, Sato Y, Kawashima M, Furumichi M & Tanabe M (2014) Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res 42: D199-D205.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D199-D205
-
-
Kanehisa, M.1
Goto, S.2
Sato, Y.3
Kawashima, M.4
Furumichi, M.5
Tanabe, M.6
-
38
-
-
0036593492
-
Heterogeneity of genome and proteome content in bacteria, archaea, and eukaryotes
-
Karlin S, Brocchieri L, Trent J, Blaisdell BE & Mrázek J (2002) Heterogeneity of genome and proteome content in bacteria, archaea, and eukaryotes. Theor Popul Biol 61: 367-390.
-
(2002)
Theor Popul Biol
, vol.61
, pp. 367-390
-
-
Karlin, S.1
Brocchieri, L.2
Trent, J.3
Blaisdell, B.E.4
Mrázek, J.5
-
39
-
-
0029768098
-
Mitochondrial and cytosolic branched-chain amino acid transaminases from yeast, homologs of the myc oncogene-regulated Eca39 protein
-
Kispal G, Steiner H, Court DA, Rolinski B & Lill R (1996) Mitochondrial and cytosolic branched-chain amino acid transaminases from yeast, homologs of the myc oncogene-regulated Eca39 protein. J Biol Chem 271: 24458-24464.
-
(1996)
J Biol Chem
, vol.271
, pp. 24458-24464
-
-
Kispal, G.1
Steiner, H.2
Court, D.A.3
Rolinski, B.4
Lill, R.5
-
40
-
-
0037338355
-
Leucine biosynthesis in fungi: entering metabolism through the back door
-
Kohlhaw GB (2003) Leucine biosynthesis in fungi: entering metabolism through the back door. Microbiol Mol Biol Rev 67: 1-15.
-
(2003)
Microbiol Mol Biol Rev
, vol.67
, pp. 1-15
-
-
Kohlhaw, G.B.1
-
41
-
-
25844463806
-
Metabolic functions of duplicate genes in Saccharomyces cerevisiae
-
Küpfer L, Sauer U & Blank LM (2005) Metabolic functions of duplicate genes in Saccharomyces cerevisiae. Genome Res 15: 1421-1430.
-
(2005)
Genome Res
, vol.15
, pp. 1421-1430
-
-
Küpfer, L.1
Sauer, U.2
Blank, L.M.3
-
42
-
-
84880001702
-
Re-annotation of protein-coding genes in the genome of Saccharomyces cerevisiae based on support vector machines
-
Lin D, Yin X, Wang X, Zhou P & Guo FB (2013) Re-annotation of protein-coding genes in the genome of Saccharomyces cerevisiae based on support vector machines. PLoS ONE 8: e64477.
-
(2013)
PLoS ONE
, vol.8
, pp. e64477
-
-
Lin, D.1
Yin, X.2
Wang, X.3
Zhou, P.4
Guo, F.B.5
-
43
-
-
84920132284
-
-
Preparation of yeast mitochondria and in vitro assay of respiratory chain complex activities.
-
Magri S, Fracasso V, Rimoldi M & Taroni F (2010) Preparation of yeast mitochondria and in vitro assay of respiratory chain complex activities.
-
(2010)
-
-
Magri, S.1
Fracasso, V.2
Rimoldi, M.3
Taroni, F.4
-
44
-
-
57649116075
-
α-Isopropylmalate, a leucine biosynthesis intermediate in yeast, is transported by the mitochondrial oxalacetate carrier
-
Marobbio CMT, Giannuzzi G, Paradies E, Pierri CL & Palmieri F (2008) α-Isopropylmalate, a leucine biosynthesis intermediate in yeast, is transported by the mitochondrial oxalacetate carrier. J Biol Chem 283: 28445-28453.
-
(2008)
J Biol Chem
, vol.283
, pp. 28445-28453
-
-
Marobbio, C.M.T.1
Giannuzzi, G.2
Paradies, E.3
Pierri, C.L.4
Palmieri, F.5
-
46
-
-
84855932983
-
Recombinant protein production in yeasts
-
(Lorence A, ed.) - Humana Press, Totowa, NJ.
-
Mattanovich D, Branduardi P, Dato L, Gasser B, Sauer M & Porro D (2012) Recombinant protein production in yeasts. Recombinant Gene Expression, Vol. 824 (Lorence A, ed.), pp. 329-358. Humana Press, Totowa, NJ.
-
(2012)
Recombinant Gene Expression
, vol.824
, pp. 329-358
-
-
Mattanovich, D.1
Branduardi, P.2
Dato, L.3
Gasser, B.4
Sauer, M.5
Porro, D.6
-
47
-
-
0032972509
-
PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization
-
Nakai K & Horton P (1999) PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. Trends Biochem Sci 24: 34-35.
-
(1999)
Trends Biochem Sci
, vol.24
, pp. 34-35
-
-
Nakai, K.1
Horton, P.2
-
48
-
-
36549082406
-
Computational prediction of subcellular localization
-
Nakai K & Horton P (2007) Computational prediction of subcellular localization. Methods Mol Biol 390: 429-466.
-
(2007)
Methods Mol Biol
, vol.390
, pp. 429-466
-
-
Nakai, K.1
Horton, P.2
-
49
-
-
52649105455
-
The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism
-
Nookaew I, Jewett MC, Meechai A, Thammarongtham C, Laoteng K, Cheevadhanarak S, Nielsen J & Bhumiratana S (2008) The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism. BMC Syst Biol 2: 71.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 71
-
-
Nookaew, I.1
Jewett, M.C.2
Meechai, A.3
Thammarongtham, C.4
Laoteng, K.5
Cheevadhanarak, S.6
Nielsen, J.7
Bhumiratana, S.8
-
50
-
-
84864932596
-
Fifteen years of large scale metabolic modeling of yeast: developments and impacts
-
Österlund T, Nookaew I & Nielsen J (2012) Fifteen years of large scale metabolic modeling of yeast: developments and impacts. Biotechnol Adv 30: 979-988.
-
(2012)
Biotechnol Adv
, vol.30
, pp. 979-988
-
-
Österlund, T.1
Nookaew, I.2
Nielsen, J.3
-
51
-
-
84876789665
-
Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling
-
Österlund T, Nookaew I, Bordel S & Nielsen J (2013) Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling. BMC Syst Biol 7: 36.
-
(2013)
BMC Syst Biol
, vol.7
, pp. 36
-
-
Österlund, T.1
Nookaew, I.2
Bordel, S.3
Nielsen, J.4
-
52
-
-
65349188084
-
Do amino acid biosynthetic costs constrain protein evolution in Saccharomyces cerevisiae?
-
Raiford DW, Heizer EM Jr, Miller RV, Akashi H, Raymer ML & Krane DE (2008) Do amino acid biosynthetic costs constrain protein evolution in Saccharomyces cerevisiae? J Mol Evol 67: 621-630.
-
(2008)
J Mol Evol
, vol.67
, pp. 621-630
-
-
Raiford, D.W.1
Heizer, E.M.2
Miller, R.V.3
Akashi, H.4
Raymer, M.L.5
Krane, D.E.6
-
53
-
-
34247347868
-
Sorbitol co-feeding reduces metabolic burden caused by the overexpression of a Rhizopus oryzae lipase in Pichia pastoris
-
Ramon R, Ferrer P & Valero F (2007) Sorbitol co-feeding reduces metabolic burden caused by the overexpression of a Rhizopus oryzae lipase in Pichia pastoris. J Biotechnol 130: 39-46.
-
(2007)
J Biotechnol
, vol.130
, pp. 39-46
-
-
Ramon, R.1
Ferrer, P.2
Valero, F.3
-
54
-
-
0742272467
-
Alanine: glyoxylate aminotransferase of Saccharomyces cerevisiae-encoding gene AGX1 and metabolic significance
-
Schlösser T, Gatgens C, Weber U & Stahmann KP (2004) Alanine: glyoxylate aminotransferase of Saccharomyces cerevisiae-encoding gene AGX1 and metabolic significance. Yeast 21: 63-73.
-
(2004)
Yeast
, vol.21
, pp. 63-73
-
-
Schlösser, T.1
Gatgens, C.2
Weber, U.3
Stahmann, K.P.4
-
55
-
-
36749071435
-
Escherichia coli physiology in Luria-Bertani broth
-
Sezonov G, Joseleau-Petit D & D'Ari R (2007) Escherichia coli physiology in Luria-Bertani broth. J Bacteriol 189: 8746-8749.
-
(2007)
J Bacteriol
, vol.189
, pp. 8746-8749
-
-
Sezonov, G.1
Joseleau-Petit, D.2
D'Ari, R.3
-
56
-
-
58149182731
-
Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes
-
Sherman DJ, Martin T, Nikolski M, Cayla C, Souciet J-L & Durrens P (2009) Génolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes. Nucleic Acids Res 37: D550-D554.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D550-D554
-
-
Sherman, D.J.1
Martin, T.2
Nikolski, M.3
Cayla, C.4
Souciet, J.-L.5
Durrens, P.6
-
57
-
-
77954743150
-
Genome-scale metabolic model of methylotrophic yeast Pichia pastoris and its use for in silico analysis of heterologous protein production
-
Sohn SB, Graf AB, Kim TY, Gasser B, Maurer M, Ferrer P, Mattanovich D & Lee SY (2010) Genome-scale metabolic model of methylotrophic yeast Pichia pastoris and its use for in silico analysis of heterologous protein production. Biotechnol J 5: 705-715.
-
(2010)
Biotechnol J
, vol.5
, pp. 705-715
-
-
Sohn, S.B.1
Graf, A.B.2
Kim, T.Y.3
Gasser, B.4
Maurer, M.5
Ferrer, P.6
Mattanovich, D.7
Lee, S.Y.8
-
58
-
-
0034704310
-
Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies
-
Souciet J-L, Aigle M, Artiguenave F et al. (2000) Genomic exploration of the hemiascomycetous yeasts: 1. A set of yeast species for molecular evolution studies. FEBS Lett 487: 3-12.
-
(2000)
FEBS Lett
, vol.487
, pp. 3-12
-
-
Souciet, J.-L.1
Aigle, M.2
Artiguenave, F.3
-
59
-
-
84869065441
-
ORCAE: online resource for community annotation of eukaryotes
-
Sterck L, Billiau K, Abeel T, Rouze P & Van de Peer Y (2012) ORCAE: online resource for community annotation of eukaryotes. Nat Methods 9: 1041.
-
(2012)
Nat Methods
, vol.9
, pp. 1041
-
-
Sterck, L.1
Billiau, K.2
Abeel, T.3
Rouze, P.4
Van de Peer, Y.5
-
60
-
-
26444571906
-
Estimating the time to the whole-genome duplication and the duration of concerted evolution via gene conversion in yeast
-
Sugino RP & Innan H (2005) Estimating the time to the whole-genome duplication and the duration of concerted evolution via gene conversion in yeast. Genetics 171: 63-69.
-
(2005)
Genetics
, vol.171
, pp. 63-69
-
-
Sugino, R.P.1
Innan, H.2
-
61
-
-
0037019808
-
Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis
-
Tekaia F, Yeramian E & Dujon B (2002) Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis. Gene 297: 51-60.
-
(2002)
Gene
, vol.297
, pp. 51-60
-
-
Tekaia, F.1
Yeramian, E.2
Dujon, B.3
-
62
-
-
75149129569
-
A protocol for generating a high-quality genome-scale metabolic reconstruction
-
Thiele I & Palsson BO (2010) A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat Protoc 5: 93-121.
-
(2010)
Nat Protoc
, vol.5
, pp. 93-121
-
-
Thiele, I.1
Palsson, B.O.2
-
63
-
-
0015256860
-
Genetic and physiological control of serine and glycine biosynthesis in Saccharomyces
-
Ulane R & Ogur M (1972) Genetic and physiological control of serine and glycine biosynthesis in Saccharomyces. J Bacteriol 109: 34-43.
-
(1972)
J Bacteriol
, vol.109
, pp. 34-43
-
-
Ulane, R.1
Ogur, M.2
-
64
-
-
0015352869
-
Alpha-isopropylmalate synthase from yeast: purification, kinetic studies, and effect of ligands on stability
-
Ulm EH, Bohme R & Kohlhaw G (1972) Alpha-isopropylmalate synthase from yeast: purification, kinetic studies, and effect of ligands on stability. J Bacteriol 110: 1118-1126.
-
(1972)
J Bacteriol
, vol.110
, pp. 1118-1126
-
-
Ulm, E.H.1
Bohme, R.2
Kohlhaw, G.3
-
65
-
-
0030792184
-
Cytosolic aspartate aminotransferase encoded by the AAT2 gene is targeted to the peroxisomes in oleate-grown Saccharomyces cerevisiae
-
Verleur N, Elgersma Y, Van Roermund CW, Tabak HF & Wanders RJ (1997) Cytosolic aspartate aminotransferase encoded by the AAT2 gene is targeted to the peroxisomes in oleate-grown Saccharomyces cerevisiae. Eur J Biochem 247: 972-980.
-
(1997)
Eur J Biochem
, vol.247
, pp. 972-980
-
-
Verleur, N.1
Elgersma, Y.2
Van Roermund, C.W.3
Tabak, H.F.4
Wanders, R.J.5
-
66
-
-
33646381380
-
Comparative genomics and genome evolution in yeasts
-
Wolfe KH (2006) Comparative genomics and genome evolution in yeasts. Philos Trans R Soc Lond B Biol Sci 361: 403-412.
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, pp. 403-412
-
-
Wolfe, K.H.1
-
67
-
-
0030947344
-
Molecular evidence for an ancient duplication of the entire yeast genome
-
Wolfe KH & Shields DC (1997) Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708-713.
-
(1997)
Nature
, vol.387
, pp. 708-713
-
-
Wolfe, K.H.1
Shields, D.C.2
-
68
-
-
0037047141
-
Gene order evolution and paleopolyploidy in hemiascomycete yeasts
-
Wong S, Butler G & Wolfe KH (2002) Gene order evolution and paleopolyploidy in hemiascomycete yeasts. P Natl Acad Sci USA 99: 9272-9277.
-
(2002)
P Natl Acad Sci USA
, vol.99
, pp. 9272-9277
-
-
Wong, S.1
Butler, G.2
Wolfe, K.H.3
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