Rapid and simple detection of Japanese encephalitis virus by reverse transcription loop-mediated isothermal amplification combined with a lateral flow dipstick

Journal of Virological Methods

Volumn 213, Issue , 2015, Pages 98-105

  Deng, Jieru ^a   Pei, Jingjing ^a   Gou, Hongchao ^a   Ye, Zuodong ^a   Liu, Cuicui ^a   Chen, Jinding ^a  

^a SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

Japanese encephalitis virus (JEV); Lateral flow dipstick (LFD); Reverse transcription loop mediated isothermal amplification (RT LAMP)

Indexed keywords

CALCEIN;

ACCURACY; AGAR GEL ELECTROPHORESIS; ANALYTIC METHOD; ARTERIVIRUS; ARTICLE; BIOASSAY; BOVINE DIARRHEA VIRUS; BRUCELLA; CIRCOVIRUS; CLASSICAL SWINE FEVER VIRUS; CONTROLLED STUDY; FALSE POSITIVE RESULT; INTERMETHOD COMPARISON; JAPANESE ENCEPHALITIS; JAPANESE ENCEPHALITIS VIRUS; LATERAL FLOW DIPSTICK; LIMIT OF DETECTION; NONHUMAN; PROCESS OPTIMIZATION; PSEUDORABIES HERPETOVIRUS; REACTION TIME; REVERSE TRANSCRIPTION LOOP MEDIATED ISOTHERMAL AMPLIFICATION; REVERSE TRANSCRIPTION LOOP MEDIATED ISOTHERMAL AMPLIFICATION LATERAL FLOW DIPSTICK ASSAY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; STRAIN IDENTIFICATION; VIRUS DETECTION; VIRUS STRAIN; ANIMAL; ASIA; ENCEPHALITIS, JAPANESE; EVALUATION STUDY; GENETICS; HUMAN; IMMUNOAFFINITY CHROMATOGRAPHY; ISOLATION AND PURIFICATION; NUCLEIC ACID AMPLIFICATION; PROCEDURES; REVERSE TRANSCRIPTION; TEMPERATURE; TIME; VETERINARY;

ANIMALIA; JAPANESE ENCEPHALITIS VIRUS;

ANIMALS; ASIA; ENCEPHALITIS VIRUS, JAPANESE; ENCEPHALITIS, JAPANESE; HUMANS; IMMUNOCHROMATOGRAPHY; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REVERSE TRANSCRIPTION; SENSITIVITY AND SPECIFICITY; TEMPERATURE; TIME FACTORS;

EID: 84919819881     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2014.12.006     Document Type: Article

References (24)

1. Arunrut N., Seetang-Nun Y., Phromiai J., Panphut W., Kiatpathomchai W. Rapid and sensitive detection of Laem-Singh virus by reverse transcription loop-mediated isothermal amplification combined with a lateral flow dipstick. J. Virol. Methods 2011, 177:71-74.
2. Chen Q., Yuan L., Wan J., Chen Y., Du C. Colorimetric detection of hepatitis E virus based on reverse transcription loop mediated isothermal amplification (RT-LAMP) assay. J. Virol. Methods 2014, 197:29-33.
3. Chowdry V.K., Luo Y., Widen F., Qiu H.J., Shan H., Belak S., Liu L. Development of a loop-mediated isothermal amplification assay combined with a lateral flow dipstick for rapid and simple detection of classical swine fever virus in the field. J. Virol. Methods 2014, 197:14-18.
4. Chen Z., Liao Y., Ke X., Zhou J., Chen Y., Gao L., Chen Q., Yu S. Comparison of reverse transcription loop-mediated isothermal amplification, conventional PCR and real-time PCR assays for Japanese encephalitis virus. Mol. Biol. Rep. 2011, 38:4063-4070.
5. Huang J.L., Lin H.T., Wang Y.M., Weng M.H., Ji D.D., Kuo M.D., Liu H.W., Lin C.S. Sensitive and specific detection of strains of Japanese encephalitis virus using a one-step TaqMan RT-PCR technique. J. Med. Virol. 2004, 74:589-596.
6. Holbrook M.R., Shope R.E., Barrett A.D. Use of recombinant E protein domain III-based enzyme-linked immunosorbent assays for differentiation of tick-borne encephalitis serocomplex flaviviruses from mosquito-borne flaviviruses. J. Clin. Microbiol. 2004, 42:4101-4110.
7. Igarashi A., Tanaka M., Morita K., Takasu T., Ahmed A., Akram D.S., Waqar M.A. Detection of west Nile and Japanese encephalitis viral genome sequences in cerebrospinal fluid from acute encephalitis cases in Karachi, Pakistan. Microbiol. Immunol. 1994, 38:827-830.
8. Jeong Y.E., Jeon M.J., Cho J.E., Han M.G., Choi H.J., Shin M.Y., Park H.J., Kim W., Moon B.C., Park J.S., Park B., Ju Y.R. Development and field evaluation of a nested RT-PCR kit for detecting Japanese encephalitis virus in mosquitoes. J. Virol. Methods 2011, 171:248-252.
9. Mitchell C.J., Savage H.M., Smith G.C., Flood S.P., Castro L.T., Roppul M. Japanese encephalitis on Saipan: a survey of suspected mosquito vectors. Am. J. Trop. Med. Hyg. 1993, 48:585-590.
10. Malele I.I., Ouma J.O., Enyaru J.C., Matovu E., Alibu V., Auma J.E., Onyoyo S.G., Bateta R., Changasi R.E., Mukiria P.W., Ndung'u K., Gitonga P.K., Mwaniki L.M., Nyingilili H.S., Lyaruu E.A., Kapange L.A., Kamau P.K., Masiga D.K. Comparative diagnostic and analytical performance of PCR and LAMP-based trypanosome detection methods estimated using pooled whole tsetse flies and midguts. Vet. Parasitol. 2013, 197:549-556.
11. Mackenzie J.S., Gubler D.J., Petersen L.R. Emerging flaviviruses: the spread and resurgence of Japanese encephalitis, West Nile and dengue viruses. Nat. Med. 2004, 10:S98-S109.
12. Mackenzie J.S., Johansen C.A., Ritchie S.A., van den Hurk A.F., Hall R.A. Japanese encephalitis as an emerging virus: the emergence and spread of Japanese encephalitis virus in Australasia. Curr. Top. Microbiol. Immunol. 2002, 267:49-73.
13. McMinn P.C. The molecular basis of virulence of the encephalitogenic flaviviruses. J. Gen. Virol. 1997, 78:2711-2722.
14. Notomi T., Okayama H., Masubuchi H., Yonekawa T., Watanabe K., Amino N., Hase T. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 2000, 28:E63.
15. Njiru Z.K. Loop-mediated isothermal amplification technology: towards point of care diagnostics. PLoS Negl. Trop. Dis. 2012, 6:e1572.
16. Sips G.J., Wilschut J., Smit J.M. Neuroinvasive flavivirus infections. Rev. Med. Virol. 2012, 22(2):69-87.
17. Sun J., Tso S., Chen B. Detection of Japanese encephalitis virus in samples of JE patients by RT-PCR. Zhonghua Shi Yan He Lin Chuang Bing Du Xue Za Zhi 2000, 14:184-187.
18. Song Q., Zhu R., Sun Y., Zhao L., Wang F., Deng J., Qian Y. Identification of human metapneumovirus genotypes A and B from clinical specimens by reverse transcription loop-mediated isothermal amplification. J. Virol. Methods 2014, 196:133-138.
19. Swami R., Ratho R.K., Mishra B., Singh M.P. Usefulness of RT-PCR for the diagnosis of Japanese encephalitis in clinical samples. Scand. J. Infect. Dis. 2008, 40:815-820.
20. Toriniwa H., Komiya T. Rapid detection and quantification of Japanese encephalitis virus by real-time reverse transcription loop-mediated isothermal amplification. Microbiol. Immunol. 2006, 50:379-387.
21. Tsai S.M., Liu H.J., Shien J.H., Lee L.H., Chang P.C., Wang C.Y. Rapid and sensitive detection of infectious bursal disease virus by reverse transcription loop-mediated isothermal amplification combined with a lateral flow dipstick. J. Virol. Methods 2012, 181:117-124.
22. Wang J., Cheng S., Yi L., Cheng Y., Yang S., Xu H., Li Z., Shi X., Wu H., Yan X. Detection of mink enteritis virus by loop-mediated isothermal amplification (LAMP). J. Virol. Methods 2013, 187:401-405.
23. Wang L., Li Y., Chu J., Xu Z., Zhong Q. Development and application of a simple loop-mediated isothermal amplification method on rapid detection of Listeria monocytogenes strains. Mol. Biol. Rep. 2012, 39:445-449.
24. Zhao X., Li Y., Wang L., You L., Xu Z., Li L., He X., Liu Y., Wang J., Yang L. Development and application of a loop-mediated isothermal amplification method on rapid detection Escherichia coli O157 strains from food samples. Mol. Biol. Rep. 2010, 37:2183-2188.