-
1
-
-
0033588891
-
Viral Dynamics of Acute HIV-1 Infection
-
Little SJ, McLean AR, Spina CA, Richman DD, Havlir DV, (1999) Viral Dynamics of Acute HIV-1 Infection. The Journal of Experimental Medicine 190: 841–850.
-
(1999)
The Journal of Experimental Medicine
, vol.190
, pp. 841-850
-
-
Little, S.J.1
McLean, A.R.2
Spina, C.A.3
Richman, D.D.4
Havlir, D.V.5
-
2
-
-
0030026113
-
Reduction of HIV concentration during acute infection: independence from a specific immune response
-
Phillips AN, (1996) Reduction of HIV concentration during acute infection: independence from a specific immune response. Science (New York, NY) 271: 497–499.
-
(1996)
Science (New York, NY)
, vol.271
, pp. 497-499
-
-
Phillips, A.N.1
-
3
-
-
34548134145
-
A Whole-Genome Association Study of Major Determinants for Host Control of HIV-1
-
Fellay J, Shianna KV, Ge D, Colombo S, Ledergerber B, et al. (2007) A Whole-Genome Association Study of Major Determinants for Host Control of HIV-1. Science 317: 944–947.
-
(2007)
Science
, vol.317
, pp. 944-947
-
-
Fellay, J.1
Shianna, K.V.2
Ge, D.3
Colombo, S.4
Ledergerber, B.5
-
4
-
-
74249086566
-
Common Genetic Variation and the Control of HIV-1 in Humans
-
Fellay J, Ge D, Shianna KV, Colombo S, Ledergerber B, et al. (2009) Common Genetic Variation and the Control of HIV-1 in Humans. PLoS Genet 5: e1000791.
-
(2009)
PLoS Genet
, vol.5
-
-
Fellay, J.1
Ge, D.2
Shianna, K.V.3
Colombo, S.4
Ledergerber, B.5
-
5
-
-
77956827161
-
Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection
-
Leslie A, Matthews PC, Listgarten J, Carlson JM, Kadie C, et al. (2010) Additive Contribution of HLA Class I Alleles in the Immune Control of HIV-1 Infection. Journal of Virology 84: 9879–9888.
-
(2010)
Journal of Virology
, vol.84
, pp. 9879-9888
-
-
Leslie, A.1
Matthews, P.C.2
Listgarten, J.3
Carlson, J.M.4
Kadie, C.5
-
6
-
-
78650084232
-
The Major Genetic Determinants of HIV-1 Control Affect HLA Class I Peptide Presentation
-
The International HIV Controllers Study, (2010) The Major Genetic Determinants of HIV-1 Control Affect HLA Class I Peptide Presentation. Science 330: 1551–1557.
-
(2010)
Science
, vol.330
, pp. 1551-1557
-
-
The International HIV Controllers, S.1
-
7
-
-
77954059111
-
HIV-1 Transmitting Couples Have Similar Viral Load Set-Points in Rakai, Uganda
-
Hollingsworth TD, Laeyendecker O, Shirreff G, Donnelly CA, Serwadda D, et al. (2010) HIV-1 Transmitting Couples Have Similar Viral Load Set-Points in Rakai, Uganda. PLoS Pathog 6: e1000876.
-
(2010)
PLoS Pathog
, vol.6
-
-
Hollingsworth, T.D.1
Laeyendecker, O.2
Shirreff, G.3
Donnelly, C.A.4
Serwadda, D.5
-
8
-
-
78149306494
-
Phylogenetic Approach Reveals That Virus Genotype Largely Determines HIV Set-Point Viral Load
-
Alizon S, von Wyl V, Stadler T, Kouyos RD, Yerly S, et al. (2010) Phylogenetic Approach Reveals That Virus Genotype Largely Determines HIV Set-Point Viral Load. PLoS Pathog 6: e1001123.
-
(2010)
PLoS Pathog
, vol.6
-
-
Alizon, S.1
von Wyl, V.2
Stadler, T.3
Kouyos, R.D.4
Yerly, S.5
-
9
-
-
79953078481
-
A Strong Case for Viral Genetic Factors in HIV Virulence
-
Müller V, Fraser C, Herbeck JT, (2011) A Strong Case for Viral Genetic Factors in HIV Virulence. Viruses 3: 204–216.
-
(2011)
Viruses
, vol.3
, pp. 204-216
-
-
Müller, V.1
Fraser, C.2
Herbeck, J.T.3
-
10
-
-
84901679825
-
The Contribution of Viral Genotype to Plasma Viral Set-Point in HIV Infection
-
Hodcroft E, Hadfield JD, Fearnhill E, Phillips A, Dunn D, et al. (2014) The Contribution of Viral Genotype to Plasma Viral Set-Point in HIV Infection. PLoS Pathog 10: e1004112.
-
(2014)
PLoS Pathog
, vol.10
-
-
Hodcroft, E.1
Hadfield, J.D.2
Fearnhill, E.3
Phillips, A.4
Dunn, D.5
-
11
-
-
84871983347
-
Cumulative Impact of Host and Viral Factors on HIV-1 Viral-Load Control during Early Infection
-
Yue L, Prentice HA, Farmer P, Song W, He D, et al. (2013) Cumulative Impact of Host and Viral Factors on HIV-1 Viral-Load Control during Early Infection. Journal of Virology 87: 708–715.
-
(2013)
Journal of Virology
, vol.87
, pp. 708-715
-
-
Yue, L.1
Prentice, H.A.2
Farmer, P.3
Song, W.4
He, D.5
-
12
-
-
77953916828
-
HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients:
-
van der Kuyl AC, Jurriaans S, Pollakis G, Bakker M, Cornelissen M, (2010) HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients:. AIDS 24: 1607–1608.
-
(2010)
AIDS
, vol.24
, pp. 1607-1608
-
-
van der Kuyl, A.C.1
Jurriaans, S.2
Pollakis, G.3
Bakker, M.4
Cornelissen, M.5
-
13
-
-
77950927522
-
HIV RNA level in early infection is predicted by viral load in the transmission source
-
Hecht FM, Hartogensis W, Bragg L, Bacchetti P, Atchison R, et al. (2010) HIV RNA level in early infection is predicted by viral load in the transmission source. AIDS April 24, 2010 24: 941–945.
-
(2010)
AIDS April 24, 2010
, vol.24
, pp. 941-945
-
-
Hecht, F.M.1
Hartogensis, W.2
Bragg, L.3
Bacchetti, P.4
Atchison, R.5
-
14
-
-
0742325052
-
HLA Allele Sharing and HIV Type 1 Viremia in Seroconverting Zambians with Known Transmitting Partners
-
Tang J, Tang S, Lobashevsky E, Zulu I, Aldrovandi G, et al. (2004) HLA Allele Sharing and HIV Type 1 Viremia in Seroconverting Zambians with Known Transmitting Partners. AIDS Research and Human Retroviruses 20: 19–25.
-
(2004)
AIDS Research and Human Retroviruses
, vol.20
, pp. 19-25
-
-
Tang, J.1
Tang, S.2
Lobashevsky, E.3
Zulu, I.4
Aldrovandi, G.5
-
15
-
-
20244368227
-
Rates of HIV-1 Transmission per Coital Act, by Stage of HIV-1 Infection, in Rakai, Uganda
-
Wawer MJ, Gray RH, Sewankambo NK, Serwadda D, Li X, et al. (2005) Rates of HIV-1 Transmission per Coital Act, by Stage of HIV-1 Infection, in Rakai, Uganda. Journal of Infectious Diseases 191: 1403–1409.
-
(2005)
Journal of Infectious Diseases
, vol.191
, pp. 1403-1409
-
-
Wawer, M.J.1
Gray, R.H.2
Sewankambo, N.K.3
Serwadda, D.4
Li, X.5
-
16
-
-
1842296349
-
Plasma Viral Load and CD4+ Lymphocytes as Prognostic Markers of HIV-1 Infection
-
Mellors JW, Munoz A, Giorgi JV, Margolick JB, Tassoni CJ, et al. (1997) Plasma Viral Load and CD4+ Lymphocytes as Prognostic Markers of HIV-1 Infection. Annals of Internal Medicine 126: 946–954.
-
(1997)
Annals of Internal Medicine
, vol.126
, pp. 946-954
-
-
Mellors, J.W.1
Munoz, A.2
Giorgi, J.V.3
Margolick, J.B.4
Tassoni, C.J.5
-
17
-
-
36849064140
-
Variation in HIV-1 set-point viral load: Epidemiological analysis and an evolutionary hypothesis
-
Fraser C, Hollingsworth TD, Chapman R, de Wolf F, Hanage WP, (2007) Variation in HIV-1 set-point viral load: Epidemiological analysis and an evolutionary hypothesis. Proceedings of the National Academy of Sciences 104: 17441–17446.
-
(2007)
Proceedings of the National Academy of Sciences
, vol.104
, pp. 17441-17446
-
-
Fraser, C.1
Hollingsworth, T.D.2
Chapman, R.3
de Wolf, F.4
Hanage, W.P.5
-
18
-
-
80055080332
-
Transmission Selects for HIV-1 Strains of Intermediate Virulence: A Modelling Approach
-
Shirreff G, Pellis L, Laeyendecker O, Fraser C, (2011) Transmission Selects for HIV-1 Strains of Intermediate Virulence: A Modelling Approach. PLoS Comput Biol 7: e1002185.
-
(2011)
PLoS Comput Biol
, vol.7
-
-
Shirreff, G.1
Pellis, L.2
Laeyendecker, O.3
Fraser, C.4
-
19
-
-
53349127137
-
Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960
-
Worobey M, Gemmel M, Teuwen DE, Haselkorn T, Kunstman K, et al. (2008) Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960. Nature 455: 661–664.
-
(2008)
Nature
, vol.455
, pp. 661-664
-
-
Worobey, M.1
Gemmel, M.2
Teuwen, D.E.3
Haselkorn, T.4
Kunstman, K.5
-
20
-
-
0035967987
-
The origins of acquired immune deficiency syndrome viruses: where and when?
-
Sharp PM, Bailes E, Chaudhuri RR, Rodenburg CM, Santiago MO, et al. (2001) The origins of acquired immune deficiency syndrome viruses: where and when? Philosophical Transactions of the Royal Society of London Series B: Biological Sciences 356: 867–876.
-
(2001)
Philosophical Transactions of the Royal Society of London Series B: Biological Sciences
, vol.356
, pp. 867-876
-
-
Sharp, P.M.1
Bailes, E.2
Chaudhuri, R.R.3
Rodenburg, C.M.4
Santiago, M.O.5
-
21
-
-
84885054606
-
Is Hiv Short-Sighted? Insights from a Multistrain Nested Model
-
Lythgoe KA, Pellis L, Fraser C, (2013) Is Hiv Short-Sighted? Insights from a Multistrain Nested Model. Evolution 67: 2769–2782.
-
(2013)
Evolution
, vol.67
, pp. 2769-2782
-
-
Lythgoe, K.A.1
Pellis, L.2
Fraser, C.3
-
22
-
-
0028203644
-
Short-sighted evolution and the virulence of pathogenic microorganisms
-
Levin BR, Bull JJ, (1994) Short-sighted evolution and the virulence of pathogenic microorganisms. Trends in microbiology 2: 76–81.
-
(1994)
Trends in microbiology
, vol.2
, pp. 76-81
-
-
Levin, B.R.1
Bull, J.J.2
-
23
-
-
0033524838
-
Control of Viremia in Simian Immunodeficiency Virus Infection by CD8+ Lymphocytes
-
Schmitz JE, Kuroda MJ, Santra S, Sasseville VG, Simon MA, et al. (1999) Control of Viremia in Simian Immunodeficiency Virus Infection by CD8+ Lymphocytes. Science 283: 857–860.
-
(1999)
Science
, vol.283
, pp. 857-860
-
-
Schmitz, J.E.1
Kuroda, M.J.2
Santra, S.3
Sasseville, V.G.4
Simon, M.A.5
-
24
-
-
4344709121
-
Roles of Target Cells and Virus-Specific Cellular Immunity in Primary Simian Immunodeficiency Virus Infection
-
Regoes RR, Antia R, Garber DA, Silvestri G, Feinberg MB, et al. (2004) Roles of Target Cells and Virus-Specific Cellular Immunity in Primary Simian Immunodeficiency Virus Infection. Journal of Virology 78: 4866–4875.
-
(2004)
Journal of Virology
, vol.78
, pp. 4866-4875
-
-
Regoes, R.R.1
Antia, R.2
Garber, D.A.3
Silvestri, G.4
Feinberg, M.B.5
-
25
-
-
84873830139
-
Vertical T cell immunodominance and epitope entropy determine HIV-1 escape
-
Liu MK, Hawkins N, Ritchie AJ, Ganusov VV, Whale V, et al. (2013) Vertical T cell immunodominance and epitope entropy determine HIV-1 escape. The Journal of Clinical Investigation 123: 380–393.
-
(2013)
The Journal of Clinical Investigation
, vol.123
, pp. 380-393
-
-
Liu, M.K.1
Hawkins, N.2
Ritchie, A.J.3
Ganusov, V.V.4
Whale, V.5
-
26
-
-
67449147145
-
The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection
-
Goonetilleke N, Liu MKP, Salazar-Gonzalez JF, Ferrari G, Giorgi E, et al. (2009) The first T cell response to transmitted/founder virus contributes to the control of acute viremia in HIV-1 infection. The Journal of Experimental Medicine 206: 1253–1272.
-
(2009)
The Journal of Experimental Medicine
, vol.206
, pp. 1253-1272
-
-
Goonetilleke, N.1
Liu, M.K.P.2
Salazar-Gonzalez, J.F.3
Ferrari, G.4
Giorgi, E.5
-
27
-
-
84861214061
-
Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection
-
Henn MR, Boutwell CL, Charlebois P, Lennon NJ, Power KA, et al. (2012) Whole Genome Deep Sequencing of HIV-1 Reveals the Impact of Early Minor Variants Upon Immune Recognition During Acute Infection. PLoS Pathog 8: e1002529.
-
(2012)
PLoS Pathog
, vol.8
-
-
Henn, M.R.1
Boutwell, C.L.2
Charlebois, P.3
Lennon, N.J.4
Power, K.A.5
-
28
-
-
48749103238
-
Impact of MHC class I diversity on immune control of immunodeficiency virus replication
-
Goulder PJR, Watkins DI, (2008) Impact of MHC class I diversity on immune control of immunodeficiency virus replication. Nature Reviews Immunology 8: 619–630.
-
(2008)
Nature Reviews Immunology
, vol.8
, pp. 619-630
-
-
Goulder, P.J.R.1
Watkins, D.I.2
-
29
-
-
43549109265
-
Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients
-
Goepfert PA, Lumm W, Farmer P, Matthews P, Prendergast A, et al. (2008) Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients. The Journal of Experimental Medicine 205: 1009–1017.
-
(2008)
The Journal of Experimental Medicine
, vol.205
, pp. 1009-1017
-
-
Goepfert, P.A.1
Lumm, W.2
Farmer, P.3
Matthews, P.4
Prendergast, A.5
-
30
-
-
84870786421
-
Role of Transmitted Gag CTL Polymorphisms in Defining Replicative Capacity and Early HIV-1 Pathogenesis
-
Prince JL, Claiborne DT, Carlson JM, Schaefer M, Yu T, et al. (2012) Role of Transmitted Gag CTL Polymorphisms in Defining Replicative Capacity and Early HIV-1 Pathogenesis. PLoS Pathog 8: e1003041.
-
(2012)
PLoS Pathog
, vol.8
-
-
Prince, J.L.1
Claiborne, D.T.2
Carlson, J.M.3
Schaefer, M.4
Yu, T.5
-
31
-
-
78649659194
-
Quantifying the Impact of Human Immunodeficiency Virus-1 Escape From Cytotoxic T-Lymphocytes
-
Kadolsky UD, Asquith B, (2010) Quantifying the Impact of Human Immunodeficiency Virus-1 Escape From Cytotoxic T-Lymphocytes. PLoS Comput Biol 6: e1000981.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Kadolsky, U.D.1
Asquith, B.2
-
32
-
-
33846101731
-
CD8+ T-cell responses to different HIV proteins have discordant associations with viral load
-
Kiepiela P, Ngumbela K, Thobakgale C, Ramduth D, Honeyborne I, et al. (2007) CD8+ T-cell responses to different HIV proteins have discordant associations with viral load. Nature Medicine 13: 46–53.
-
(2007)
Nature Medicine
, vol.13
, pp. 46-53
-
-
Kiepiela, P.1
Ngumbela, K.2
Thobakgale, C.3
Ramduth, D.4
Honeyborne, I.5
-
33
-
-
1842741699
-
HIV evolution: CTL escape mutation and reversion after transmission
-
Leslie AJ, Pfafferott KJ, Chetty P, Draenert R, Addo MM, et al. (2004) HIV evolution: CTL escape mutation and reversion after transmission. Nature Medicine 10: 282–289.
-
(2004)
Nature Medicine
, vol.10
, pp. 282-289
-
-
Leslie, A.J.1
Pfafferott, K.J.2
Chetty, P.3
Draenert, R.4
Addo, M.M.5
-
34
-
-
2942672080
-
Selection, Transmission, and Reversion of an Antigen-Processing Cytotoxic T-Lymphocyte Escape Mutation in Human Immunodeficiency Virus Type 1 Infection
-
Allen TM, Altfeld M, Yu XG, O'Sullivan KM, Lichterfeld M, et al. (2004) Selection, Transmission, and Reversion of an Antigen-Processing Cytotoxic T-Lymphocyte Escape Mutation in Human Immunodeficiency Virus Type 1 Infection. Journal of Virology 78: 7069–7078.
-
(2004)
Journal of Virology
, vol.78
, pp. 7069-7078
-
-
Allen, T.M.1
Altfeld, M.2
Yu, X.G.3
O'Sullivan, K.M.4
Lichterfeld, M.5
-
35
-
-
77956094445
-
Quantifying how MHC polymorphism prevents pathogens from adapting to the antigen presentation pathway
-
Schmid B, Ke,smir C, de Boer R, (2010) Quantifying how MHC polymorphism prevents pathogens from adapting to the antigen presentation pathway. Epidemics 2: 99–108.
-
(2010)
Epidemics
, vol.2
, pp. 99-108
-
-
Schmid, B.1
Ke,smir, C.2
de Boer, R.3
-
36
-
-
0033559648
-
Dramatic Rise in Plasma Viremia after CD8+ T Cell Depletion in Simian Immunodeficiency Virus–infected Macaques
-
Jin X, Bauer DE, Tuttleton SE, Lewin S, Gettie A, et al. (1999) Dramatic Rise in Plasma Viremia after CD8+ T Cell Depletion in Simian Immunodeficiency Virus–infected Macaques. The Journal of Experimental Medicine 189: 991–998.
-
(1999)
The Journal of Experimental Medicine
, vol.189
, pp. 991-998
-
-
Jin, X.1
Bauer, D.E.2
Tuttleton, S.E.3
Lewin, S.4
Gettie, A.5
-
37
-
-
77951950465
-
Experimental depletion of CD8+ cells in acutely SIVagm-Infected African Green Monkeys results in increased viral replication
-
Gaufin T, Ribeiro RM, Gautam R, Dufour J, Mandell D, et al. (2010) Experimental depletion of CD8+ cells in acutely SIVagm-Infected African Green Monkeys results in increased viral replication. Retrovirology 7: 42.
-
(2010)
Retrovirology
, vol.7
, pp. 42
-
-
Gaufin, T.1
Ribeiro, R.M.2
Gautam, R.3
Dufour, J.4
Mandell, D.5
-
38
-
-
20244373940
-
Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA
-
Leslie A, Kavanagh D, Honeyborne I, Pfafferott K, Edwards C, et al. (2005) Transmission and accumulation of CTL escape variants drive negative associations between HIV polymorphisms and HLA. J Exp Med 201: 891–902.
-
(2005)
J Exp Med
, vol.201
, pp. 891-902
-
-
Leslie, A.1
Kavanagh, D.2
Honeyborne, I.3
Pfafferott, K.4
Edwards, C.5
-
39
-
-
63149087382
-
A Comparative Study of HLA Binding Affinity and Ligand Diversity: Implications for Generating Immunodominant CD8+ T Cell Responses
-
Rao X, Costa AICAF, Baarle Dv, Keşmir C, (2009) A Comparative Study of HLA Binding Affinity and Ligand Diversity: Implications for Generating Immunodominant CD8+ T Cell Responses. The Journal of Immunology 182: 1526–1532.
-
(2009)
The Journal of Immunology
, vol.182
, pp. 1526-1532
-
-
Rao, X.1
Costa, A.I.C.A.F.2
Baarle, D.3
Keşmir, C.4
-
40
-
-
80054757509
-
HLA class I allele promiscuity revisited
-
Rao X, Hoof I, Costa AICAF, Baarle Dv, Keşmir C, (2011) HLA class I allele promiscuity revisited. Immunogenetics 63: 691–701.
-
(2011)
Immunogenetics
, vol.63
, pp. 691-701
-
-
Rao, X.1
Hoof, I.2
Costa, A.I.C.A.F.3
Baarle, D.4
Keşmir, C.5
-
41
-
-
50949118004
-
HIV-1 Transmission, by Stage of Infection
-
Hollingsworth TD, Anderson RM, Fraser C, (2008) HIV-1 Transmission, by Stage of Infection. Journal of Infectious Diseases 198: 687–693.
-
(2008)
Journal of Infectious Diseases
, vol.198
, pp. 687-693
-
-
Hollingsworth, T.D.1
Anderson, R.M.2
Fraser, C.3
-
42
-
-
0036677204
-
A clarification of transmission terms in host-microparasite models: numbers, densities and areas
-
Begon M, Bennett M, Bowers RG, French NP, Hazel SM, et al. (2002) A clarification of transmission terms in host-microparasite models: numbers, densities and areas. Epidemiol Infect 129: 147–153.
-
(2002)
Epidemiol Infect
, vol.129
, pp. 147-153
-
-
Begon, M.1
Bennett, M.2
Bowers, R.G.3
French, N.P.4
Hazel, S.M.5
-
43
-
-
79251616079
-
Dynamics of Viral Evolution and CTL Responses in HIV-1 Infection
-
Liu Y, McNevin JP, Holte S, McElrath MJ, Mullins JI, (2011) Dynamics of Viral Evolution and CTL Responses in HIV-1 Infection. PLoS ONE 6: e15639.
-
(2011)
PLoS ONE
, vol.6
-
-
Liu, Y.1
McNevin, J.P.2
Holte, S.3
McElrath, M.J.4
Mullins, J.I.5
-
44
-
-
84919613883
-
-
Hodcroft E, Fearnhill E, Phillips A, Dunn D, Pillay D, et al. (2013). Viral Genotype in Subtype C Significantly Influences Plasma Viral Load. Poster presentation 258b at CROI 2013.
-
-
-
-
45
-
-
59449094834
-
NetMHCpan, a method for MHC class I binding prediction beyond humans
-
Hoof I, Peters B, Sidney J, Pedersen LE, Sette A, et al. (2009) NetMHCpan, a method for MHC class I binding prediction beyond humans. Immunogenetics 61: 1–13.
-
(2009)
Immunogenetics
, vol.61
, pp. 1-13
-
-
Hoof, I.1
Peters, B.2
Sidney, J.3
Pedersen, L.E.4
Sette, A.5
-
46
-
-
84884217651
-
The Rate of Immune Escape Vanishes When Multiple Immune Responses Control an HIV Infection
-
van Deutekom HWM, Wijnker G, Boer RJd, (2013) The Rate of Immune Escape Vanishes When Multiple Immune Responses Control an HIV Infection. The Journal of Immunology 191: 3277–3286.
-
(2013)
The Journal of Immunology
, vol.191
, pp. 3277-3286
-
-
van Deutekom, H.W.M.1
Wijnker, G.2
Boer, R.J.3
-
47
-
-
3042607969
-
Transmission of HIV-1 and HLA-B allele-sharing within serodiscordant heterosexual Zambian couples
-
Dorak MT, Tang J, Penman-Aguilar A, Westfall AO, Zulu I, et al. (2004) Transmission of HIV-1 and HLA-B allele-sharing within serodiscordant heterosexual Zambian couples. Lancet 363: 2137–2139.
-
(2004)
Lancet
, vol.363
, pp. 2137-2139
-
-
Dorak, M.T.1
Tang, J.2
Penman-Aguilar, A.3
Westfall, A.O.4
Zulu, I.5
-
48
-
-
84155168018
-
Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission
-
Herbeck JT, Müller V, Maust BS, Ledergerber B, Torti C, et al. (2012) Is the virulence of HIV changing? A meta-analysis of trends in prognostic markers of HIV disease progression and transmission. AIDS January 14, 2012 26: 193–205.
-
(2012)
AIDS January 14, 2012
, vol.26
, pp. 193-205
-
-
Herbeck, J.T.1
Müller, V.2
Maust, B.S.3
Ledergerber, B.4
Torti, C.5
-
49
-
-
84863863242
-
New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels
-
Lythgoe KA, Fraser C, (2012) New insights into the evolutionary rate of HIV-1 at the within-host and epidemiological levels. Proceedings of the Royal Society B: Biological Sciences 279: 3367–3375.
-
(2012)
Proceedings of the Royal Society B: Biological Sciences
, vol.279
, pp. 3367-3375
-
-
Lythgoe, K.A.1
Fraser, C.2
-
50
-
-
84885693840
-
Virus-induced target cell activation reconciles set-point viral load heritability and within-host evolution
-
Hool A, Leventhal GE, Bonhoeffer S, (2013) Virus-induced target cell activation reconciles set-point viral load heritability and within-host evolution. Epidemics 5: 174–180.
-
(2013)
Epidemics
, vol.5
, pp. 174-180
-
-
Hool, A.1
Leventhal, G.E.2
Bonhoeffer, S.3
-
51
-
-
84896918882
-
Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective
-
Fraser C, Lythgoe K, Leventhal GE, Shirreff G, Hollingsworth TD, et al. (2014) Virulence and pathogenesis of HIV-1 infection: an evolutionary perspective. Science 343: 1243727.
-
(2014)
Science
, vol.343
-
-
Fraser, C.1
Lythgoe, K.2
Leventhal, G.E.3
Shirreff, G.4
Hollingsworth, T.D.5
-
52
-
-
84876878971
-
Within-host and between-host evolutionary rates across the HIV-1 genome
-
Alizon S, Fraser C, (2013) Within-host and between-host evolutionary rates across the HIV-1 genome. Retrovirology 10: 49.
-
(2013)
Retrovirology
, vol.10
, pp. 49
-
-
Alizon, S.1
Fraser, C.2
-
53
-
-
84904114340
-
HIV transmission. Selection bias at the heterosexual HIV-1 transmission bottleneck
-
Carlson JM, Schaefer M, Monaco DC, Batorsky R, Claiborne DT, et al. (2014) HIV transmission. Selection bias at the heterosexual HIV-1 transmission bottleneck. Science 345: 1254031.
-
(2014)
Science
, vol.345
-
-
Carlson, J.M.1
Schaefer, M.2
Monaco, D.C.3
Batorsky, R.4
Claiborne, D.T.5
-
54
-
-
0037165969
-
Evidence of HIV-1 Adaptation to HLA-Restricted Immune Responses at a Population Level
-
Moore CB, John M, James IR, Christiansen FT, Witt CS, et al. (2002) Evidence of HIV-1 Adaptation to HLA-Restricted Immune Responses at a Population Level. Science 296: 1439–1443.
-
(2002)
Science
, vol.296
, pp. 1439-1443
-
-
Moore, C.B.1
John, M.2
James, I.R.3
Christiansen, F.T.4
Witt, C.S.5
-
55
-
-
63949087100
-
Adaptation of HIV-1 to human leukocyte antigen class I
-
Kawashima Y, Pfafferott K, Frater J, Matthews P, Payne R, et al. (2009) Adaptation of HIV-1 to human leukocyte antigen class I. Nature 458: 641–645.
-
(2009)
Nature
, vol.458
, pp. 641-645
-
-
Kawashima, Y.1
Pfafferott, K.2
Frater, J.3
Matthews, P.4
Payne, R.5
-
56
-
-
79960137057
-
Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China
-
Dong T, Zhang Y, Xu KY, Yan H, James I, et al. (2011) Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China. Blood 118: 98–106.
-
(2011)
Blood
, vol.118
, pp. 98-106
-
-
Dong, T.1
Zhang, Y.2
Xu, K.Y.3
Yan, H.4
James, I.5
-
57
-
-
80052396244
-
Loss of HIV-1-derived cytotoxic T lymphocyte epitopes restricted by protective HLA-B alleles during the HIV-1 epidemic:
-
Schellens IM, Navis M, van Deutekom HW, Boeser-Nunnink B, Berkhout B, et al. (2011) Loss of HIV-1-derived cytotoxic T lymphocyte epitopes restricted by protective HLA-B alleles during the HIV-1 epidemic:. AIDS 25: 1691–1700.
-
(2011)
AIDS
, vol.25
, pp. 1691-1700
-
-
Schellens, I.M.1
Navis, M.2
van Deutekom, H.W.3
Boeser-Nunnink, B.4
Berkhout, B.5
-
58
-
-
45549105435
-
Has HIV evolved to induce immune pathogenesis?
-
Bartha I, Simon P, Müller V, (2008) Has HIV evolved to induce immune pathogenesis? Trends in Immunology 29: 322–328.
-
(2008)
Trends in Immunology
, vol.29
, pp. 322-328
-
-
Bartha, I.1
Simon, P.2
Müller, V.3
-
59
-
-
84876966654
-
Immune Activation Promotes Evolutionary Conservation of T-Cell Epitopes in HIV-1
-
Sanjuán R, Nebot MR, Peris JB, Alcamí J, (2013) Immune Activation Promotes Evolutionary Conservation of T-Cell Epitopes in HIV-1. PLoS Biol 11: e1001523.
-
(2013)
PLoS Biol
, vol.11
-
-
Sanjuán, R.1
Nebot, M.R.2
Peris, J.B.3
Alcamí, J.4
-
60
-
-
33645768069
-
Inefficient Cytotoxic T Lymphocyte–Mediated Killing of HIV-1–Infected Cells In Vivo
-
Asquith B, Edwards CTT, Lipsitch M, McLean AR, (2006) Inefficient Cytotoxic T Lymphocyte–Mediated Killing of HIV-1–Infected Cells In Vivo. PLoS Biol 4: e90.
-
(2006)
PLoS Biol
, vol.4
, pp. 90
-
-
Asquith, B.1
Edwards, C.T.T.2
Lipsitch, M.3
McLean, A.R.4
-
62
-
-
84879772304
-
Computational inference methods for selective sweeps arising in acute HIV infection
-
Leviyang S, (2013) Computational inference methods for selective sweeps arising in acute HIV infection. Genetics 194: 737–752.
-
(2013)
Genetics
, vol.194
, pp. 737-752
-
-
Leviyang, S.1
-
63
-
-
84883132678
-
Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
-
Lang GI, Rice DP, Hickman MJ, Sodergren E, Weinstock GM, et al. (2013) Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations. Nature 500: 571–574.
-
(2013)
Nature
, vol.500
, pp. 571-574
-
-
Lang, G.I.1
Rice, D.P.2
Hickman, M.J.3
Sodergren, E.4
Weinstock, G.M.5
-
64
-
-
84867152138
-
Clonal Interference in the Evolution of Influenza
-
Strelkowa N, Lässig M, (2012) Clonal Interference in the Evolution of Influenza. Genetics 192: 671–682.
-
(2012)
Genetics
, vol.192
, pp. 671-682
-
-
Strelkowa, N.1
Lässig, M.2
-
65
-
-
84919499306
-
Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants
-
Pandit A, de Boer RJ, (2014) Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants. Retrovirology 11: 56.
-
(2014)
Retrovirology
, vol.11
, pp. 56
-
-
Pandit, A.1
de Boer, R.J.2
-
66
-
-
0000045988
-
On the Asymptotic Distribution of the Size of a Stochastic Epidemic
-
Sellke T, (1983) On the Asymptotic Distribution of the Size of a Stochastic Epidemic. Journal of Applied Probability 20: 390–394.
-
(1983)
Journal of Applied Probability
, vol.20
, pp. 390-394
-
-
Sellke, T.1
-
67
-
-
0036845274
-
Reproduction numbers and sub-threshold endemic equilibria for compartmental models of disease transmission
-
van den Driessche P, Watmough J, (2002) Reproduction numbers and sub-threshold endemic equilibria for compartmental models of disease transmission. Math Biosci 180: 29–48.
-
(2002)
Math Biosci
, vol.180
, pp. 29-48
-
-
van den Driessche, P.1
Watmough, J.2
-
68
-
-
0025159677
-
On the definition and the computation of the basic reproduction ratio R 0 in models for infectious diseases in heterogeneous populations
-
Diekmann O, Heesterbeek JAP, Metz JAJ, (1990) On the definition and the computation of the basic reproduction ratio R 0 in models for infectious diseases in heterogeneous populations. Journal of Mathematical Biology 28: 365–382.
-
(1990)
Journal of Mathematical Biology
, vol.28
, pp. 365-382
-
-
Diekmann, O.1
Heesterbeek, J.A.P.2
Metz, J.A.J.3
-
69
-
-
84863306901
-
Lavaan: An r package for structural equation modeling
-
Rosseel Y, (2012) lavaan: An r package for structural equation modeling. Journal of Statistical Software 48: 1–36.
-
(2012)
Journal of Statistical Software
, vol.48
, pp. 1-36
-
-
Rosseel, Y.1
-
70
-
-
51349141248
-
HIV-1 subtype and circulating recombinant form (CRF) reference sequences
-
Leitner T, Korber B, Daniels M, Calef C, Foley B (2005) HIV-1 subtype and circulating recombinant form (CRF) reference sequences. In: Leitner T, Foley B, Hahn B, Marx P, McCutchan F, editors, HIV Sequence Compendium. Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, pp. 41–48.
-
(2005)
, pp. 41-48
-
-
Leitner, T.1
Korber, B.2
Daniels, M.3
Calef, C.4
Foley, B.5
Foley, B.6
Hahn, B.7
Marx, P.8
McCutchan, F.9
-
71
-
-
84919613882
-
Immunobiology of the Human MHC: Proceedings of the 13th International Histocompatibility Workshop and Conference, Volume I
-
Meyer D, Singe RM, Mack SJ, Lancaster A, Nelson MP, et al. (2007), In: Hansen JA, editors
-
Meyer D, Singe RM, Mack SJ, Lancaster A, Nelson MP, et al. (2007) Single locus polymorphism of classical hla genes. In: Hansen JA, editors, Immunobiology of the Human MHC: Proceedings of the 13th International Histocompatibility Workshop and Conference, Volume I . IHWG Press, pp. 653–704.
-
Single locus polymorphism of classical hla genes
, pp. 653-704
-
-
-
72
-
-
82755162141
-
A comparative analysis of viral peptides presented by contemporary human and chimpanzee MHC class I molecules
-
van Deutekom HW, Hoof I, Bontrop RE, Keşmir C, (2011) A comparative analysis of viral peptides presented by contemporary human and chimpanzee MHC class I molecules. J Immunol 187: 5995–6001.
-
(2011)
J Immunol
, vol.187
, pp. 5995-6001
-
-
van Deutekom, H.W.1
Hoof, I.2
Bontrop, R.E.3
Keşmir, C.4
-
73
-
-
0003781238
-
Markov Chains
-
Norris JR (1998) Markov Chains. Cambridge University Press.
-
(1998)
-
-
Norris, J.R.1
-
74
-
-
84924334224
-
Mathematical Tools for Understanding Infectious Disease Dynamics
-
Diekmann O, Heesterbeek H, Britton T (2013) Mathematical Tools for Understanding Infectious Disease Dynamics. Princeton University Press.
-
(2013)
-
-
Diekmann, O.1
Heesterbeek, H.2
Britton, T.3
-
75
-
-
0029052478
-
Antigenic oscillations and shifting immunodominance in HIV-1 infections
-
Nowak MA, May RM, Phillips RE, Rowland-Jones S, Lalloo DG, et al. (1995) Antigenic oscillations and shifting immunodominance in HIV-1 infections. Nature 375: 606–611.
-
(1995)
Nature
, vol.375
, pp. 606-611
-
-
Nowak, M.A.1
May, R.M.2
Phillips, R.E.3
Rowland-Jones, S.4
Lalloo, D.G.5
-
76
-
-
34247125724
-
Vaccine-Induced T Cells Control Reversion of AIDS Virus Immune Escape Mutants
-
Fernandez CS, Smith MZ, Batten CJ, Rose RD, Reece JC, et al. (2007) Vaccine-Induced T Cells Control Reversion of AIDS Virus Immune Escape Mutants. Journal of Virology 81: 4137–4144.
-
(2007)
Journal of Virology
, vol.81
, pp. 4137-4144
-
-
Fernandez, C.S.1
Smith, M.Z.2
Batten, C.J.3
Rose, R.D.4
Reece, J.C.5
-
77
-
-
79251491677
-
Modelling the Evolution and Spread of HIV Immune Escape Mutants
-
Fryer HR, Frater J, Duda A, Roberts MG, Phillips RE, et al. (2010) Modelling the Evolution and Spread of HIV Immune Escape Mutants. PLoS Pathog 6: e1001196.
-
(2010)
PLoS Pathog
, vol.6
-
-
Fryer, H.R.1
Frater, J.2
Duda, A.3
Roberts, M.G.4
Phillips, R.E.5
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