메뉴 건너뛰기




Volumn 13, Issue , 2015, Pages 10-22

Enzymatic systems involved in decomposition reflects the ecology and taxonomy of saprotrophic fungi

Author keywords

Basidiomycota; Decomposition; Ecology; Enzyme activity; Fungal genomics; Glycosyl hydrolase

Indexed keywords

ASCOMYCOTA; BASIDIOMYCOTA; FUNGI;

EID: 84919473036     PISSN: 17545048     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funeco.2014.08.002     Document Type: Article
Times cited : (116)

References (71)
  • 3
    • 33645027271 scopus 로고    scopus 로고
    • Fungal laccases - occurrence and properties
    • Baldrian P. Fungal laccases - occurrence and properties. FEMS Microbiology Reviews 2006, 30:215-242.
    • (2006) FEMS Microbiology Reviews , vol.30 , pp. 215-242
    • Baldrian, P.1
  • 4
    • 42149088072 scopus 로고    scopus 로고
    • Enzymes of saprotrophic basidiomycetes
    • Academic Press, Amsterdam, L. Boddy, J.C. Frankland, P. van West (Eds.)
    • Baldrian P. Enzymes of saprotrophic basidiomycetes. Ecology of Saprotrophic Basidiomycetes 2008, 19-41. Academic Press, Amsterdam. L. Boddy, J.C. Frankland, P. van West (Eds.).
    • (2008) Ecology of Saprotrophic Basidiomycetes , pp. 19-41
    • Baldrian, P.1
  • 5
    • 0041370202 scopus 로고    scopus 로고
    • Variability of laccase activity in the white-rot basidiomycete Pleurotus ostreatus
    • Baldrian P., Gabriel J. Variability of laccase activity in the white-rot basidiomycete Pleurotus ostreatus. Folia Microbiologica 2002, 47:385-390.
    • (2002) Folia Microbiologica , vol.47 , pp. 385-390
    • Baldrian, P.1    Gabriel, J.2
  • 7
    • 42149110897 scopus 로고    scopus 로고
    • Degradation of cellulose by basidiomycetous fungi
    • Baldrian P., Valášková V. Degradation of cellulose by basidiomycetous fungi. FEMS Microbiology Reviews 2008, 32:501-521.
    • (2008) FEMS Microbiology Reviews , vol.32 , pp. 501-521
    • Baldrian, P.1    Valášková, V.2
  • 8
    • 78650309081 scopus 로고    scopus 로고
    • Production of extracellular enzymes and degradation of biopolymers by saprotrophic microfungi from the upper layers of forest soil
    • Baldrian P., Voříšková J., Dobiášová P., Merhautová V., Lisá L., Valášková V. Production of extracellular enzymes and degradation of biopolymers by saprotrophic microfungi from the upper layers of forest soil. Plant and Soil 2011, 338:111-125.
    • (2011) Plant and Soil , vol.338 , pp. 111-125
    • Baldrian, P.1    Voříšková, J.2    Dobiášová, P.3    Merhautová, V.4    Lisá, L.5    Valášková, V.6
  • 10
    • 84866932780 scopus 로고    scopus 로고
    • Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin
    • Benoit I., Coutinho P.M., Schols H.A., Gerlach J.P., Henrissat B., de Vries R.P. Degradation of different pectins by fungi: correlations and contrasts between the pectinolytic enzyme sets identified in genomes and the growth on pectins of different origin. BMC Genomics 2012, 13.
    • (2012) BMC Genomics , vol.13
    • Benoit, I.1    Coutinho, P.M.2    Schols, H.A.3    Gerlach, J.P.4    Henrissat, B.5    de Vries, R.P.6
  • 13
    • 0025315157 scopus 로고
    • Oxidation of non-phenolic substrates. An expanded role for laccase in lignin biodegradation
    • Bourbonnais R., Paice M.G. Oxidation of non-phenolic substrates. An expanded role for laccase in lignin biodegradation. FEBS Letters 1990, 267:99-102.
    • (1990) FEBS Letters , vol.267 , pp. 99-102
    • Bourbonnais, R.1    Paice, M.G.2
  • 14
    • 0036444740 scopus 로고    scopus 로고
    • Extracellular enzymatic activity profiles in yeast and yeast-like strains isolated from tropical environments
    • Buzzini P., Martini A. Extracellular enzymatic activity profiles in yeast and yeast-like strains isolated from tropical environments. Journal of Applied Microbiology 2002, 93:1020-1025.
    • (2002) Journal of Applied Microbiology , vol.93 , pp. 1020-1025
    • Buzzini, P.1    Martini, A.2
  • 15
    • 84879399852 scopus 로고    scopus 로고
    • Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system
    • Collins C., Keane T.M., Turner D.J., O'Keeffe G., Fitzpatrick D.A., Doyle S. Genomic and proteomic dissection of the ubiquitous plant pathogen, Armillaria mellea: toward a new infection model system. Journal of Proteome Research 2013, 12:2552-2570.
    • (2013) Journal of Proteome Research , vol.12 , pp. 2552-2570
    • Collins, C.1    Keane, T.M.2    Turner, D.J.3    O'Keeffe, G.4    Fitzpatrick, D.A.5    Doyle, S.6
  • 17
    • 23744460935 scopus 로고    scopus 로고
    • Living in a fungal world: impact of fungi on soil bacterial niche development
    • de Boer W., Folman L.B., Summerbell R.C., Boddy L. Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiology Reviews 2005, 29:795-811.
    • (2005) FEMS Microbiology Reviews , vol.29 , pp. 795-811
    • de Boer, W.1    Folman, L.B.2    Summerbell, R.C.3    Boddy, L.4
  • 20
    • 84862656222 scopus 로고    scopus 로고
    • Laccase activity in soils: considerations for the measurement of enzyme activity
    • Eichlerová I., Šnajdr J., Baldrian P. Laccase activity in soils: considerations for the measurement of enzyme activity. Chemosphere 2012, 88:1154-1160.
    • (2012) Chemosphere , vol.88 , pp. 1154-1160
    • Eichlerová, I.1    Šnajdr, J.2    Baldrian, P.3
  • 24
    • 84878370770 scopus 로고    scopus 로고
    • The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera
    • Haridas S., Wang Y., Lim L., Massoumi Alamouti S., Jackman S., Docking R., Robertson G., Birol I., Bohlmann J., Breuil C. The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera. BMC Genomics 2013, 14:373.
    • (2013) BMC Genomics , vol.14 , pp. 373
    • Haridas, S.1    Wang, Y.2    Lim, L.3    Massoumi Alamouti, S.4    Jackman, S.5    Docking, R.6    Robertson, G.7    Birol, I.8    Bohlmann, J.9    Breuil, C.10
  • 27
    • 84892379836 scopus 로고    scopus 로고
    • Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot polyporales provides insight into mechanisms of wood decay
    • Hori C., Gaskell J., Igarashi K., Samejima M., Hibbett D., Henrissat B., Cullen D. Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot polyporales provides insight into mechanisms of wood decay. Mycologia 2013, 105:1412-1427.
    • (2013) Mycologia , vol.105 , pp. 1412-1427
    • Hori, C.1    Gaskell, J.2    Igarashi, K.3    Samejima, M.4    Hibbett, D.5    Henrissat, B.6    Cullen, D.7
  • 28
    • 77956207198 scopus 로고    scopus 로고
    • Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil
    • Kellner H., Vandenbol M. Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil. PLoS One 2010, 5:e10971.
    • (2010) PLoS One , vol.5 , pp. e10971
    • Kellner, H.1    Vandenbol, M.2
  • 29
    • 3242668773 scopus 로고    scopus 로고
    • Fungal communities, succession, enzymes, and decomposition
    • Marcel Dekker, New York, R.G. Burns, R.P. Dick (Eds.)
    • Kjoller A., Struwe S. Fungal communities, succession, enzymes, and decomposition. Enzymes in the Environment: Activity, Ecology and Applications 2002, 267-284. Marcel Dekker, New York. R.G. Burns, R.P. Dick (Eds.).
    • (2002) Enzymes in the Environment: Activity, Ecology and Applications , pp. 267-284
    • Kjoller, A.1    Struwe, S.2
  • 33
    • 84918778588 scopus 로고    scopus 로고
    • Effects of canopy opening and debris deposition on fungal connectivity, phosphorus movement between litter cohorts and mass loss
    • (in press)
    • Lodge D.J., Cantrell S.A., González G. Effects of canopy opening and debris deposition on fungal connectivity, phosphorus movement between litter cohorts and mass loss. Forest Ecology and Management 2014, (in press). 10.1016/j.foreco.2014.03.002.
    • (2014) Forest Ecology and Management
    • Lodge, D.J.1    Cantrell, S.A.2    González, G.3
  • 34
    • 64949166634 scopus 로고    scopus 로고
    • Distribution and role of mat-forming saprobic basidiomycetes in a tropical forest
    • Academic Press, Amsterdam, L. Boddy, J.C. Frankland, P. van West (Eds.)
    • Lodge D.J., McDowell W.H., Macy J., Ward S.K., Leisso R., Claudio Campos K., Kuhnert K. Distribution and role of mat-forming saprobic basidiomycetes in a tropical forest. Ecology of Saprotrophic Basidiomycetes 2008, 195-208. Academic Press, Amsterdam. L. Boddy, J.C. Frankland, P. van West (Eds.).
    • (2008) Ecology of Saprotrophic Basidiomycetes , pp. 195-208
    • Lodge, D.J.1    McDowell, W.H.2    Macy, J.3    Ward, S.K.4    Leisso, R.5    Claudio Campos, K.6    Kuhnert, K.7
  • 35
    • 22144492300 scopus 로고    scopus 로고
    • A molecular method to evaluate basidiomycete laccase gene expression in forest soils
    • Luis P., Kellner H., Martin F., Buscot F. A molecular method to evaluate basidiomycete laccase gene expression in forest soils. Geoderma 2005, 128:18-27.
    • (2005) Geoderma , vol.128 , pp. 18-27
    • Luis, P.1    Kellner, H.2    Martin, F.3    Buscot, F.4
  • 41
    • 84875365733 scopus 로고    scopus 로고
    • Phylogenetic conservatism of functional traits in microorganisms
    • Martiny A.C., Treseder K., Pusch G. Phylogenetic conservatism of functional traits in microorganisms. ISME Journal 2013, 7:830-838.
    • (2013) ISME Journal , vol.7 , pp. 830-838
    • Martiny, A.C.1    Treseder, K.2    Pusch, G.3
  • 43
    • 28644434509 scopus 로고    scopus 로고
    • Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus
    • Nierman W.C., Pain A., Anderson M.J., Wortman J.R., Kim H.S., Arroyo J., Berriman M., Abe K., Archer D.B., Bermejo C., Bennett J., Bowyer P., Chen D., Collins M., Coulsen R., Davies R., Dyer P.S., Farman M., Fedorova N., Fedorova N., Feldblyum T.V., Fischer R., Fosker N., Fraser A., García J.L., García M.J., Goble A., Goldman G.H., Gomi K., Griffith-Jones S., Gwilliam R., Haas B., Haas H., Harris D., Horiuchi H., Huang J., Humphray S., Jiménez J., Keller N., Khouri H., Kitamoto K., Kobayashi T., Konzack S., Kulkarni R., Kumagai T., Lafon A., Latgé J.P., Li W., Lord A., Lu C., Majoros W.H., May G.S., Miller B.L., Mohamoud Y., Molina M., Monod M., Mouyna I., Mulligan S., Murphy L., O'Neil S., Paulsen I., Peñalva M.A., Pertea M., Price C., Pritchard B.L., Quail M.A., Rabbinowitsch E., Rawlins N., Rajandream M.A., Reichard U., Renauld H., Robson G.D., Rodriguez de Córdoba S., Rodríguez-Peña J.M., Ronning C.M., Rutter S., Salzberg S.L., Sanchez M., Sánchez-Ferrero J.C., Saunders D., Seeger K., Squares R., Squares S., Takeuchi M., Tekaia F., Turner G., Vazquez de Aldana C.R., Weidman J., White O., Woodward J., Yu J.H., Fraser C., Galagan J.E., Asai K., Machida M., Hall N., Barrell B., Denning D.W. Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus. Nature 2005, 438:1151-1156.
    • (2005) Nature , vol.438 , pp. 1151-1156
    • Nierman, W.C.1    Pain, A.2    Anderson, M.J.3    Wortman, J.R.4    Kim, H.S.5    Arroyo, J.6    Berriman, M.7    Abe, K.8    Archer, D.B.9    Bermejo, C.10    Bennett, J.11    Bowyer, P.12    Chen, D.13    Collins, M.14    Coulsen, R.15    Davies, R.16    Dyer, P.S.17    Farman, M.18    Fedorova, N.19    Fedorova, N.20    more..
  • 44
    • 36148980100 scopus 로고    scopus 로고
    • Ecology of ligninolytic fungi associated with leaf litter decomposition
    • Osono T. Ecology of ligninolytic fungi associated with leaf litter decomposition. Ecological Research 2007, 22:955-974.
    • (2007) Ecological Research , vol.22 , pp. 955-974
    • Osono, T.1
  • 45
    • 0036587909 scopus 로고    scopus 로고
    • Comparison of litter decomposing ability among diverse fungi in a cool temperate deciduous forest in Japan
    • Osono T., Takeda H. Comparison of litter decomposing ability among diverse fungi in a cool temperate deciduous forest in Japan. Mycologia 2002, 94:421-427.
    • (2002) Mycologia , vol.94 , pp. 421-427
    • Osono, T.1    Takeda, H.2
  • 46
    • 33746080840 scopus 로고    scopus 로고
    • Fungal decomposition of Abies needle and Betula leaf litter
    • Osono T., Takeda H. Fungal decomposition of Abies needle and Betula leaf litter. Mycologia 2006, 98:172-179.
    • (2006) Mycologia , vol.98 , pp. 172-179
    • Osono, T.1    Takeda, H.2
  • 47
    • 0037314759 scopus 로고    scopus 로고
    • Production of wood-decay enzymes, mass loss and lignin solubilization in wood by tropical xylariaceae
    • Pointing S.B., Parungao M.M., Hyde K.D. Production of wood-decay enzymes, mass loss and lignin solubilization in wood by tropical xylariaceae. Mycological Research 2003, 107:231-235.
    • (2003) Mycological Research , vol.107 , pp. 231-235
    • Pointing, S.B.1    Parungao, M.M.2    Hyde, K.D.3
  • 48
    • 80053199513 scopus 로고    scopus 로고
    • RNA reveals a succession of active fungi during the decay of Norway spruce logs
    • Rajala T., Peltoniemi M., Hantula J., Mäkipää R., Pennanen T. RNA reveals a succession of active fungi during the decay of Norway spruce logs. Fungal Ecology 2011, 4:437-448.
    • (2011) Fungal Ecology , vol.4 , pp. 437-448
    • Rajala, T.1    Peltoniemi, M.2    Hantula, J.3    Mäkipää, R.4    Pennanen, T.5
  • 52
    • 34249977596 scopus 로고    scopus 로고
    • Differential degradation of oak (Quercus petraea) leaf litter by litter-decomposing basidiomycetes
    • Steffen K.T., Cajthaml T., Snajdr J., Baldrian P. Differential degradation of oak (Quercus petraea) leaf litter by litter-decomposing basidiomycetes. Research in Microbiology 2007, 158:447-455.
    • (2007) Research in Microbiology , vol.158 , pp. 447-455
    • Steffen, K.T.1    Cajthaml, T.2    Snajdr, J.3    Baldrian, P.4
  • 53
    • 0034353291 scopus 로고    scopus 로고
    • 14C-labelled synthetic lignin and ligninolytic enzyme activities of litter-decomposing basidiomycetous fungi
    • 14C-labelled synthetic lignin and ligninolytic enzyme activities of litter-decomposing basidiomycetous fungi. Applied Microbiology and Biotechnology 2000, 54:819-825.
    • (2000) Applied Microbiology and Biotechnology , vol.54 , pp. 819-825
    • Steffen, K.T.1    Hofrichter, M.2    Hatakka, A.3
  • 56
    • 78650792449 scopus 로고    scopus 로고
    • Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition
    • Šnajdr J., Cajthaml T., Valášková V., Merhautová V., Petránková M., Spetz P., Leppänen K., Baldrian P. Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition. FEMS Microbiology Ecology 2011, 75:291-303.
    • (2011) FEMS Microbiology Ecology , vol.75 , pp. 291-303
    • Šnajdr, J.1    Cajthaml, T.2    Valášková, V.3    Merhautová, V.4    Petránková, M.5    Spetz, P.6    Leppänen, K.7    Baldrian, P.8
  • 58
    • 69749084914 scopus 로고
    • Lignin peroxidase of Phanerochaete chrysosporium
    • Tien M., Kirk T.K. Lignin peroxidase of Phanerochaete chrysosporium. Methods in Enzymology 1988, 161:238-249.
    • (1988) Methods in Enzymology , vol.161 , pp. 238-249
    • Tien, M.1    Kirk, T.K.2
  • 59
    • 70349440548 scopus 로고    scopus 로고
    • Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood
    • Valášková V., de Boer W., Gunnewiek P., Pospíšek M., Baldrian P. Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood. ISME Journal 2009, 3:1218-1221.
    • (2009) ISME Journal , vol.3 , pp. 1218-1221
    • Valášková, V.1    de Boer, W.2    Gunnewiek, P.3    Pospíšek, M.4    Baldrian, P.5
  • 60
    • 34447515578 scopus 로고    scopus 로고
    • Production of lignocellulose-degrading enzymes and degradation of leaf litter by saprotrophic basidiomycetes isolated from a Quercus petraea forest
    • Valášková V., Šnajdr J., Bittner B., Cajthaml T., Merhautová V., Hofrichter M., Baldrian P. Production of lignocellulose-degrading enzymes and degradation of leaf litter by saprotrophic basidiomycetes isolated from a Quercus petraea forest. Soil Biology and Biochemistry 2007, 39:2651-2660.
    • (2007) Soil Biology and Biochemistry , vol.39 , pp. 2651-2660
    • Valášková, V.1    Šnajdr, J.2    Bittner, B.3    Cajthaml, T.4    Merhautová, V.5    Hofrichter, M.6    Baldrian, P.7
  • 62
    • 84878981180 scopus 로고    scopus 로고
    • A thready affair: linking fungal diversity and community dynamics to terrestrial decomposition processes
    • van der Wal A., Geydan T.D., Kuyper T.W., de Boer W. A thready affair: linking fungal diversity and community dynamics to terrestrial decomposition processes. FEMS Microbiology Reviews 2013, 37:477-494.
    • (2013) FEMS Microbiology Reviews , vol.37 , pp. 477-494
    • van der Wal, A.1    Geydan, T.D.2    Kuyper, T.W.3    de Boer, W.4
  • 63
    • 84873085302 scopus 로고    scopus 로고
    • Extracellular enzymes of the white-rot fungus Fomes fomentarius and purification of 1,4-beta-Glucosidase
    • Větrovský T., Baldrian P., Gabriel J. Extracellular enzymes of the white-rot fungus Fomes fomentarius and purification of 1,4-beta-Glucosidase. Applied Biochemistry and Biotechnology 2013, 169:100-109.
    • (2013) Applied Biochemistry and Biotechnology , vol.169 , pp. 100-109
    • Větrovský, T.1    Baldrian, P.2    Gabriel, J.3
  • 64
    • 84895774007 scopus 로고    scopus 로고
    • Potential of cometabolic transformation of polysaccharides and lignin in lignocellulose by soil actinobacteria
    • Větrovský T., Steffen K.T., Baldrian P. Potential of cometabolic transformation of polysaccharides and lignin in lignocellulose by soil actinobacteria. PLoS One 2014, 9:e89108.
    • (2014) PLoS One , vol.9 , pp. e89108
    • Větrovský, T.1    Steffen, K.T.2    Baldrian, P.3
  • 66
    • 84875162399 scopus 로고    scopus 로고
    • Fungal community on decomposing leaf litter undergoes rapid successional changes
    • Voříšková J., Baldrian P. Fungal community on decomposing leaf litter undergoes rapid successional changes. ISME Journal 2013, 7:477-486.
    • (2013) ISME Journal , vol.7 , pp. 477-486
    • Voříšková, J.1    Baldrian, P.2
  • 67
    • 84862732885 scopus 로고    scopus 로고
    • Draft genome of Omphalotus olearius provides a predictive framework for sesquiterpenoid natural product biosynthesis in Basidiomycota
    • Wawrzyn G.T., Quin M.B., Choudhary S., Lopez-Gallego F., Schmidt-Dannert C. Draft genome of Omphalotus olearius provides a predictive framework for sesquiterpenoid natural product biosynthesis in Basidiomycota. Chemistry & Biology 2012, 19:772-783.
    • (2012) Chemistry & Biology , vol.19 , pp. 772-783
    • Wawrzyn, G.T.1    Quin, M.B.2    Choudhary, S.3    Lopez-Gallego, F.4    Schmidt-Dannert, C.5
  • 68
    • 84876739031 scopus 로고    scopus 로고
    • Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi
    • Zhao Z.T., Liu H.Q., Wang C.F., Xu J.R. Comparative analysis of fungal genomes reveals different plant cell wall degrading capacity in fungi. BMC Genomics 2013, 14.
    • (2013) BMC Genomics , vol.14
    • Zhao, Z.T.1    Liu, H.Q.2    Wang, C.F.3    Xu, J.R.4
  • 69
    • 84878318466 scopus 로고    scopus 로고
    • Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes
    • Zimmerman A.E., Martiny A.C., Allison S.D. Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes. ISME Journal 2013, 7:1187-1199.
    • (2013) ISME Journal , vol.7 , pp. 1187-1199
    • Zimmerman, A.E.1    Martiny, A.C.2    Allison, S.D.3
  • 70
    • 84864112250 scopus 로고    scopus 로고
    • Fungal polysaccharide monooxygenases: new players in the decomposition of cellulose
    • Žifčáková L., Baldrian P. Fungal polysaccharide monooxygenases: new players in the decomposition of cellulose. Fungal Ecology 2012, 5:481-489.
    • (2012) Fungal Ecology , vol.5 , pp. 481-489
    • Žifčáková, L.1    Baldrian, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.