-
1
-
-
79959320676
-
Microbial diversity of cellulose hydrolysis
-
Wilson DB. 2011. Microbial diversity of cellulose hydrolysis. Curr. Opin. Microbiol. 14:259 -263.
-
(2011)
Curr. Opin. Microbiol.
, vol.14
, pp. 259-263
-
-
Wilson, D.B.1
-
2
-
-
80053569422
-
Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance
-
Goldfarb KC, Karaoz U, Hanson CA, Santee CA, Bradford MA, Treseder KK, Wallenstein MD, Brodie EL. 2011. Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance. Front. Microbiol. 2:94
-
(2011)
Front. Microbiol.
, vol.2
, pp. 94
-
-
Goldfarb, K.C.1
Karaoz, U.2
Hanson, C.A.3
Santee, C.A.4
Bradford, M.A.5
Treseder, K.K.6
Wallenstein, M.D.7
Brodie, E.L.8
-
3
-
-
20444418677
-
Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments
-
Allison SD. 2005. Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments. Ecol. Lett. 8:626-635.
-
(2005)
Ecol. Lett.
, vol.8
, pp. 626-635
-
-
Allison, S.D.1
-
4
-
-
33845361492
-
Interactions of bacteria and fungi on decomposing litter: differential extracellular enzyme activities
-
Romaní AM, Fischer H, Mille-Lindblom C, Tranvik LJ. 2006. Interactions of bacteria and fungi on decomposing litter: differential extracellular enzyme activities. Ecology 87:2559 -2569.
-
(2006)
Ecology
, vol.87
, pp. 2559-2569
-
-
Romaní, A.M.1
Fischer, H.2
Mille-Lindblom, C.3
Tranvik, L.J.4
-
5
-
-
50049126125
-
Colloquium paper: Resistance, resilience, and redundancy in microbial communities
-
Allison SD, Martiny JB. 2008. Colloquium paper: resistance, resilience, and redundancy in microbial communities. Proc. Natl. Acad. Sci. U. S. A. 105(Suppl 1):11512-11519.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, Issue.SUPPL 1
, pp. 11512-11519
-
-
Allison, S.D.1
Martiny, J.B.2
-
6
-
-
84864013176
-
A trait-based approach for modelling microbial litter decomposition
-
Allison SD. 2012. A trait-based approach for modelling microbial litter decomposition. Ecol. Lett. 15:1058 -1070.
-
(2012)
Ecol. Lett.
, vol.15
, pp. 1058-1070
-
-
Allison, S.D.1
-
7
-
-
33646411250
-
A theoretical model of litter decay and microbial interaction
-
Moorhead DL, Sinsabaugh RL. 2006. A theoretical model of litter decay and microbial interaction. Ecol. Monogr. 76:151-174.
-
(2006)
Ecol. Monogr.
, vol.76
, pp. 151-174
-
-
Moorhead, D.L.1
Sinsabaugh, R.L.2
-
8
-
-
77953219138
-
The biochemistry and structural biology of plant cell wall deconstruction
-
Gilbert HJ. 2010. The biochemistry and structural biology of plant cell wall deconstruction. Plant Physiol. 153:444-455.
-
(2010)
Plant Physiol
, vol.153
, pp. 444-455
-
-
Gilbert, H.J.1
-
9
-
-
58149200943
-
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics
-
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B. 2009. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for glycogenomics. Nucleic Acids Res. 37:D233-D238.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cantarel, B.L.1
Coutinho, P.M.2
Rancurel, C.3
Bernard, T.4
Lombard, V.5
Henrissat, B.6
-
10
-
-
33749394275
-
Understanding the biological rationale for the diversity of cellulose-directed carbohydrate-binding modules in prokaryotic enzymes
-
Blake AW, McCartney L, Flint JE, Bolam DN, Boraston AB, Gilbert HJ, Knox JP. 2006. Understanding the biological rationale for the diversity of cellulose-directed carbohydrate-binding modules in prokaryotic enzymes. J. Biol. Chem. 281:29321-29329.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 29321-29329
-
-
Blake, A.W.1
McCartney, L.2
Flint, J.E.3
Bolam, D.N.4
Boraston, A.B.5
Gilbert, H.J.6
Knox, J.P.7
-
11
-
-
84871379886
-
How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity
-
Cuskin F, Flint JE, Gloster TM, Morland C, Basle A, Henrissat B, Coutinho PM, Strazzulli A, Solovyova AS, Davies GJ, Gilbert HJ. 2012. How nature can exploit nonspecific catalytic and carbohydrate binding modules to create enzymatic specificity. Proc. Natl. Acad. Sci. U. S. A. 109:20889 -20894.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 20889-20894
-
-
Cuskin, F.1
Flint, J.E.2
Gloster, T.M.3
Morland, C.4
Basle, A.5
Henrissat, B.6
Coutinho, P.M.7
Strazzulli, A.8
Solovyova, A.S.9
Davies, G.J.10
Gilbert, H.J.11
-
12
-
-
33845626641
-
How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria
-
Deutscher J, Francke C, Postma PW. 2006. How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria. Microbiol. Mol. Biol. Rev. 70:939 -1031.
-
(2006)
Microbiol. Mol. Biol. Rev.
, vol.70
, pp. 939-1031
-
-
Deutscher, J.1
Francke, C.2
Postma, P.W.3
-
13
-
-
0034284025
-
Binding characteristics of CebR, the regulator of the ceb operon required for cellobiose/cellotriose uptake in Streptomyces reticuli
-
Schlösser A, Aldekamp T, Schrempf H. 2000. Binding characteristics of CebR, the regulator of the ceb operon required for cellobiose/cellotriose uptake in Streptomyces reticuli. FEMS Microbiol. Lett. 190:127-132.
-
(2000)
FEMS Microbiol. Lett.
, vol.190
, pp. 127-132
-
-
Schlösser, A.1
Aldekamp, T.2
Schrempf, H.3
-
14
-
-
80955179563
-
The phosphoenolpyruvate-dependent glucose-phosphotransferase system from Escherichia coli K-12 as the center of a network regulating carbohydrate flux in the cell
-
Gabor E, Gohler AK, Kosfeld A, Staab A, Kremling A, Jahreis K. 2011. The phosphoenolpyruvate-dependent glucose-phosphotransferase system from Escherichia coli K-12 as the center of a network regulating carbohydrate flux in the cell. Eur. J. Cell Biol. 90:711-720.
-
(2011)
Eur. J. Cell Biol.
, vol.90
, pp. 711-720
-
-
Gabor, E.1
Gohler, A.K.2
Kosfeld, A.3
Staab, A.4
Kremling, A.5
Jahreis, K.6
-
16
-
-
0029645404
-
Structures and mechanisms of glycosyl hydrolases
-
Davies G, Henrissat B. 1995. Structures and mechanisms of glycosyl hydrolases. Structure 3:853- 859.
-
(1995)
Structure
, vol.3
, pp. 853-859
-
-
Davies, G.1
Henrissat, B.2
-
17
-
-
78149237868
-
Glycoside hydrolases: Catalytic base/ nucleophile diversity
-
Vuong TV, Wilson DB. 2010. Glycoside hydrolases: catalytic base/ nucleophile diversity. Biotechnol. Bioeng. 107:195-205.
-
(2010)
Biotechnol. Bioeng.
, vol.107
, pp. 195-205
-
-
Vuong, T.V.1
Wilson, D.B.2
-
18
-
-
27944434246
-
Recent structural insights into the expanding world of carbohydrate-active enzymes
-
Davies GJ, Gloster TM, Henrissat B. 2005. Recent structural insights into the expanding world of carbohydrate-active enzymes. Curr. Opin. Struct. Biol. 15:637- 645.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 637-645
-
-
Davies, G.J.1
Gloster, T.M.2
Henrissat, B.3
-
19
-
-
84866500048
-
Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5)
-
doi:10.1186/1471-2148-12-186
-
Aspeborg H, Coutinho PM, Wang Y, Brumer H, III, Henrissat B. 2012. Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5). BMC Evol. Biol. 12:186. doi:10.1186/1471 -2148-12-186.
-
(2012)
BMC Evol. Biol.
, vol.12
, pp. 186
-
-
Aspeborg, H.1
Coutinho, P.M.2
Wang, Y.3
Brumer III, H.4
Henrissat, B.5
-
20
-
-
0026055308
-
A classification of glycosyl hydrolases based on amino acid sequence similarities
-
Henrissat B. 1991. A classification of glycosyl hydrolases based on amino acid sequence similarities. Biochem. J. 280(Pt 2):309 -316.
-
(1991)
Biochem. J.
, vol.280
, Issue.PART 2
, pp. 309-316
-
-
Henrissat, B.1
-
21
-
-
78149297086
-
CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database
-
Park BH, Karpinets TV, Syed MH, Leuze MR, Uberbacher EC. 2010. CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. Glycobiology 20:1574 -1584.
-
(2010)
Glycobiology
, vol.20
, pp. 1574-1584
-
-
Park, B.H.1
Karpinets, T.V.2
Syed, M.H.3
Leuze, M.R.4
Uberbacher, E.C.5
-
22
-
-
84864442502
-
DbCAN: A web resource for automated carbohydrate-active enzyme annotation
-
Yin Y, Mao X, Yang J, Chen X, Mao F, Xu Y. 2012. dbCAN: a web resource for automated carbohydrate-active enzyme annotation. Nucleic Acids Res. 40:W445-W451.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Yin, Y.1
Mao, X.2
Yang, J.3
Chen, X.4
Mao, F.5
Xu, Y.6
-
23
-
-
84875365733
-
Phylogenetic conservatism of functional traits in microorganisms
-
Epub ahead of print. doi:10.1038/ismej.2012.160. 13 December
-
Martiny AC, Treseder KK, Pusch GD. 13 December 2012. Phylogenetic conservatism of functional traits in microorganisms. ISME J. [Epub ahead of print.] doi:10.1038/ismej.2012.160.
-
(2012)
ISME J.
-
-
Martiny, A.C.1
Treseder, K.K.2
Pusch, G.D.3
-
24
-
-
84874724019
-
Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes
-
In press
-
Zimmerman AE, Martiny AC, Allison SD. Microdiversity of extracellular enzyme genes among sequenced prokaryotic genomes. ISME J., in press.
-
ISME J.
-
-
Zimmerman, A.E.1
Martiny, A.C.2
Allison, S.D.3
-
25
-
-
84858077472
-
The Pfam protein families database
-
Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer ELL, Eddy SR, Bateman A, Finn RD. 2012. The Pfam protein families database. Nucleic Acids Res. 40:D290-D301.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
Boursnell, C.6
Pang, N.7
Forslund, K.8
Ceric, G.9
Clements, J.10
Heger, A.11
Holm, L.12
Sonnhammer, E.L.L.13
Eddy, S.R.14
Bateman, A.15
Finn, R.D.16
-
26
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, de Crecy-Lagard V, Diaz N, Disz T, Edwards R, Fonstein M, Frank ED, Gerdes S, Glass EM, Goesmann A, Hanson A, Iwata-Reuyl D, Jensen R, Jamshidi N, Krause L, Kubal M, Larsen N, Linke B, McHardy AC, Meyer F, Neuweger H, Olsen G, Olson R, Osterman A, Portnoy V, Pusch GD, Rodionov DA, Ruckert C, Steiner J, Stevens R, Thiele I, Vassieva O, Ye Y, Zagnitko O, Vonstein V. 2005. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33:5691-5702.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
Choudhuri, J.V.4
Chuang, H.Y.5
Cohoon, M.6
de Crecy-Lagard, V.7
Diaz, N.8
Disz, T.9
Edwards, R.10
Fonstein, M.11
Frank, E.D.12
Gerdes, S.13
Glass, E.M.14
Goesmann, A.15
Hanson, A.16
Iwata-Reuyl, D.17
Jensen, R.18
Jamshidi, N.19
Krause, L.20
Kubal, M.21
Larsen, N.22
Linke, B.23
McHardy, A.C.24
Meyer, F.25
Neuweger, H.26
Olsen, G.27
Olson, R.28
Osterman, A.29
Portnoy, V.30
Pusch, G.D.31
Rodionov, D.A.32
Ruckert, C.33
Steiner, J.34
Stevens, R.35
Thiele, I.36
Vassieva, O.37
Ye, Y.38
Zagnitko, O.39
Vonstein, V.40
more..
-
27
-
-
77953347739
-
Accessing the SEED genome databases via Web services API: Tools for programmers
-
doi:10.1186/1471-2105-11-319
-
Disz T, Akhter S, Cuevas D, Olson R, Overbeek R, Vonstein V, Stevens R, Edwards RA. 2010. Accessing the SEED genome databases via Web services API: tools for programmers. BMC Bioinformatics 11:319. doi:10 .1186/1471-2105-11-319.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 319
-
-
Disz, T.1
Akhter, S.2
Cuevas, D.3
Olson, R.4
Overbeek, R.5
Vonstein, V.6
Stevens, R.7
Edwards, R.A.8
-
28
-
-
84868089043
-
SEED servers: High-performance access to the SEED genomes, annotations, and metabolic models
-
doi:10.1371/journal.pone.0048053.
-
Aziz RK, Devoid S, Disz T, Edwards RA, Henry CS, Olsen GJ, Olson R, Overbeek R, Parrello B, Pusch GD, Stevens RL, Vonstein V, Xia F. 2012. SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models. PLoS One 7:e48053. doi:10.1371/journal .pone.0048053.
-
(2012)
PLoS One
, vol.7
-
-
Aziz, R.K.1
Devoid, S.2
Disz, T.3
Edwards, R.A.4
Henry, C.S.5
Olsen, G.J.6
Olson, R.7
Overbeek, R.8
Parrello, B.9
Pusch, G.D.10
Stevens, R.L.11
Vonstein, V.12
Xia, F.13
-
29
-
-
80855134793
-
PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species
-
Gillespie JJ, Wattam AR, Cammer SA, Gabbard JL, Shukla MP, Dalay O, Driscoll T, Hix D, Mane SP, Mao C, Nordberg EK, Scott M, Schulman JR, Snyder EE, Sullivan DE, Wang C, Warren A, Williams KP, Xue T, Yoo HS, Zhang C, Zhang Y, Will R, Kenyon RW, Sobral BW. 2011. PATRIC: the comprehensive bacterial bioinformatics resource with a focus on human pathogenic species. Infect. Immun. 79:4286-4298.
-
(2011)
Infect. Immun.
, vol.79
, pp. 4286-4298
-
-
Gillespie, J.J.1
Wattam, A.R.2
Cammer, S.A.3
Gabbard, J.L.4
Shukla, M.P.5
Dalay, O.6
Driscoll, T.7
Hix, D.8
Mane, S.P.9
Mao, C.10
Nordberg, E.K.11
Scott, M.12
Schulman, J.R.13
Snyder, E.E.14
Sullivan, D.E.15
Wang, C.16
Warren, A.17
Williams, K.P.18
Xue, T.19
Yoo, H.S.20
Zhang, C.21
Zhang, Y.22
Will, R.23
Kenyon, R.W.24
Sobral, B.W.25
more..
-
30
-
-
67649399024
-
Leading a sheltered life: intracellular pathogens and maintenance of vacuolar compartments
-
Kumar Y, Valdivia RH. 2009. Leading a sheltered life: intracellular pathogens and maintenance of vacuolar compartments. Cell Host Microbe 5:593- 601.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 593-601
-
-
Kumar, Y.1
Valdivia, R.H.2
-
31
-
-
0036214650
-
Molecular biology of cellulose production in bacteria
-
Römling U. 2002. Molecular biology of cellulose production in bacteria. Res. Microbiol. 153:205-212.
-
(2002)
Res. Microbiol.
, vol.153
, pp. 205-212
-
-
Römling, U.1
-
32
-
-
37549027613
-
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
-
Pruesse E, Quast C, Knittel K, Fuchs BM, Ludwig W, Peplies J, Glockner FO. 2007. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res. 35:7188 -7196.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7188-7196
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glockner, F.O.7
-
33
-
-
0033990046
-
Phylogenetic analysis using PHYLIP
-
Retief JD. 2000. Phylogenetic analysis using PHYLIP. Methods Mol. Biol. 132:243-258.
-
(2000)
Methods Mol. Biol.
, vol.132
, pp. 243-258
-
-
Retief, J.D.1
-
34
-
-
0003437299
-
-
3.65 ed. Department of Genome Sciences, University of Washington, Seattle, WA
-
Felsenstein J. 2006. PHYLIP (Phylogeny Inference Package), 3.65 ed. Department of Genome Sciences, University of Washington, Seattle, WA.
-
(2006)
PHYLIP (Phylogeny Inference Package)
-
-
Felsenstein, J.1
-
35
-
-
79960004119
-
Interactive Tree Of Life v2: Online annotation and display of phylogenetic trees made easy
-
Letunic I, Bork P. 2011. Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39:W475- W478.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Letunic, I.1
Bork, P.2
-
36
-
-
79958234181
-
-
version 2.0-4
-
Oksanen J, Blanchet FG, Kindt R, Legendre P, Minchin PR, O'Hara RB, Simpson GL, Solymos P, Stevens MHN, Wagner H. 2012. Package 'vegan'-Community Ecology Package, version 2.0-4. http://cran.r -project.org/web/packages/vegan/vegan.pdf.
-
(2012)
Package 'vegan'-Community Ecology Package
-
-
Oksanen, J.1
Blanchet, F.G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
O'Hara, R.B.6
Simpson, G.L.7
Solymos, P.8
Stevens, M.H.N.9
Wagner, H.10
-
37
-
-
1042304216
-
APE: analyses of phylogenetics and evolution in R language
-
Paradis E, Claude J, Strimmer K. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289 -290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
38
-
-
77954716600
-
Selectivity in mammalian extinction risk and threat types: A new measure of phylogenetic signal strength in binary traits
-
Fritz SA, Purvis A. 2010. Selectivity in mammalian extinction risk and threat types: a new measure of phylogenetic signal strength in binary traits. Conserv. Biol. 24:1042-1051.
-
(2010)
Conserv. Biol.
, vol.24
, pp. 1042-1051
-
-
Fritz, S.A.1
Purvis, A.2
-
39
-
-
70349446423
-
Insights into bacterial cellulose biosynthesis by functional metagenomics on Antarctic soil samples
-
Berlemont R, Delsaute M, Pipers D, D'Amico S, Feller G, Galleni M, Power P. 2009. Insights into bacterial cellulose biosynthesis by functional metagenomics on Antarctic soil samples. ISME J. 3:1070 -1081.
-
(2009)
ISME J
, vol.3
, pp. 1070-1081
-
-
Berlemont, R.1
Delsaute, M.2
Pipers, D.3
D'Amico, S.4
Feller, G.5
Galleni, M.6
Power, P.7
-
40
-
-
47249145687
-
A cellulose synthase-like protein involved in hyphal tip growth and morphological differentiation in Streptomyces
-
Xu H, Chater KF, Deng Z, Tao M. 2008. A cellulose synthase-like protein involved in hyphal tip growth and morphological differentiation in Streptomyces. J. Bacteriol. 190:4971- 4978.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 4971-4978
-
-
Xu, H.1
Chater, K.F.2
Deng, Z.3
Tao, M.4
-
41
-
-
77952336564
-
Paradoxical conservation of a set of three cellulose-targeting genes in Mycobacterium tuberculosis complex organisms
-
Mba Medie F, Ben Salah I, Drancourt M, Henrissat B. 2010. Paradoxical conservation of a set of three cellulose-targeting genes in Mycobacterium tuberculosis complex organisms. Microbiology 156:1468 -1475.
-
(2010)
Microbiology
, vol.156
, pp. 1468-1475
-
-
Mba Medie, F.1
Ben Salah, I.2
Drancourt, M.3
Henrissat, B.4
-
42
-
-
44949242637
-
Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501
-
Yan Y, Yang J, Dou Y, Chen M, Ping S, Peng J, Lu W, Zhang W, Yao Z, Li H, Liu W, He S, Geng L, Zhang X, Yang F, Yu H, Zhan Y, Li D, Lin Z, Wang Y, Elmerich C, Lin M, Jin Q. 2008. Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501. Proc. Natl. Acad. Sci. U. S. A. 105:7564 -7569.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 7564-7569
-
-
Yan, Y.1
Yang, J.2
Dou, Y.3
Chen, M.4
Ping, S.5
Peng, J.6
Lu, W.7
Zhang, W.8
Yao, Z.9
Li, H.10
Liu, W.11
He, S.12
Geng, L.13
Zhang, X.14
Yang, F.15
Yu, H.16
Zhan, Y.17
Li, D.18
Lin, Z.19
Wang, Y.20
Elmerich, C.21
Lin, M.22
Jin, Q.23
more..
-
43
-
-
34548746905
-
Genomics of actinobacteria: tracing the evolutionary history of an ancient phylum
-
Ventura M, Canchaya C, Tauch A, Chandra G, Fitzgerald GF, Chater KF, van Sinderen D. 2007. Genomics of actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiol. Mol. Biol. Rev. 71:495- 548.
-
(2007)
Microbiol. Mol. Biol. Rev.
, vol.71
, pp. 495-548
-
-
Ventura, M.1
Canchaya, C.2
Tauch, A.3
Chandra, G.4
Fitzgerald, G.F.5
Chater, K.F.6
Van Sinderen, D.7
-
44
-
-
11144320832
-
Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum
-
Zhang YH, Lynd LR. 2005. Regulation of cellulase synthesis in batch and continuous cultures of Clostridium thermocellum. J. Bacteriol. 187:99- 106.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 99-106
-
-
Zhang, Y.H.1
Lynd, L.R.2
-
45
-
-
57049171897
-
Cellulase kinetics as a function of cellulose pretreatment
-
Bommarius AS, Katona A, Cheben SE, Patel AS, Ragauskas AJ, Knudson K, Pu Y. 2008. Cellulase kinetics as a function of cellulose pretreatment. Metab. Eng. 10:370 -381.
-
(2008)
Metab. Eng.
, vol.10
, pp. 370-381
-
-
Bommarius, A.S.1
Katona, A.2
Cheben, S.E.3
Patel, A.S.4
Ragauskas, A.J.5
Knudson, K.6
Pu, Y.7
-
46
-
-
84863009629
-
Enhanced cellulose degradation by targeted integration of a cohesin-fused beta-glucosidase into the Clostridium thermocellum cellulosome
-
Gefen G, Anbar M, Morag E, Lamed R, Bayer EA. 2012. Enhanced cellulose degradation by targeted integration of a cohesin-fused beta-glucosidase into the Clostridium thermocellum cellulosome. Proc. Natl. Acad. Sci. U. S. A. 109:10298 -10303.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 10298-10303
-
-
Gefen, G.1
Anbar, M.2
Morag, E.3
Lamed, R.4
Bayer, E.A.5
-
47
-
-
0242416602
-
Identification of Streptomyces coelicolor proteins that are differentially expressed in the presence of plant material
-
Langlois P, Bourassa S, Poirier GG, Beaulieu C. 2003. Identification of Streptomyces coelicolor proteins that are differentially expressed in the presence of plant material. Appl. Environ. Microbiol. 69:1884 -1889.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 1884-1889
-
-
Langlois, P.1
Bourassa, S.2
Poirier, G.G.3
Beaulieu, C.4
-
48
-
-
77953631886
-
Cellulosomes: highly efficient nanomachines designed to deconstruct plant cell wall complex carbohydrates
-
Fontes CM, Gilbert HJ. 2010. Cellulosomes: highly efficient nanomachines designed to deconstruct plant cell wall complex carbohydrates. Annu. Rev. Biochem. 79:655- 681.
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 655-681
-
-
Fontes, C.M.1
Gilbert, H.J.2
-
49
-
-
79251587455
-
Metagenomic discovery of biomass-degrading genes and genomes from cow rumen
-
Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A, Woyke T, Wang Z, Rubin EM. 2011. Metagenomic discovery of biomass-degrading genes and genomes from cow rumen. Science 331: 463-467.
-
(2011)
Science
, vol.331
, pp. 463-467
-
-
Hess, M.1
Sczyrba, A.2
Egan, R.3
Kim, T.W.4
Chokhawala, H.5
Schroth, G.6
Luo, S.7
Clark, D.S.8
Chen, F.9
Zhang, T.10
Mackie, R.I.11
Pennacchio, L.A.12
Tringe, S.G.13
Visel, A.14
Woyke, T.15
Wang, Z.16
Rubin, E.M.17
-
50
-
-
36549000721
-
Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
-
Warnecke F, Luginbuhl P, Ivanova N, Ghassemian M, Richardson TH, Stege JT, Cayouette M, McHardy AC, Djordjevic G, Aboushadi N, Sorek R, Tringe SG, Podar M, Martin HG, Kunin V, Dalevi D, Madejska J, Kirton E, Platt D, Szeto E, Salamov A, Barry K, Mikhailova N, Kyrpides NC, Matson EG, Ottesen EA, Zhang X, Hernandez M, Murillo C, Acosta LG, Rigoutsos I, Tamayo G, Green BD, Chang C, Rubin EM, Mathur EJ, Robertson DE, Hugenholtz P, Leadbetter JR. 2007. Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite. Nature 450:560 -565.
-
(2007)
Nature
, vol.450
, pp. 560-565
-
-
Warnecke, F.1
Luginbuhl, P.2
Ivanova, N.3
Ghassemian, M.4
Richardson, T.H.5
Stege, J.T.6
Cayouette, M.7
McHardy, A.C.8
Djordjevic, G.9
Aboushadi, N.10
Sorek, R.11
Tringe, S.G.12
Podar, M.13
Martin, H.G.14
Kunin, V.15
Dalevi, D.16
Madejska, J.17
Kirton, E.18
Platt, D.19
Szeto, E.20
Salamov, A.21
Barry, K.22
Mikhailova, N.23
Kyrpides, N.C.24
Matson, E.G.25
Ottesen, E.A.26
Zhang, X.27
Hernandez, M.28
Murillo, C.29
Acosta, L.G.30
Rigoutsos, I.31
Tamayo, G.32
Green, B.D.33
Chang, C.34
Rubin, E.M.35
Mathur, E.J.36
Robertson, D.E.37
Hugenholtz, P.38
Leadbetter, J.R.39
more..
-
51
-
-
80055100230
-
Evidence of cellulose metabolism by the giant panda gut microbiome
-
Zhu L, Wu Q, Dai J, Zhang S, Wei F. 2011. Evidence of cellulose metabolism by the giant panda gut microbiome. Proc. Natl. Acad. Sci. U. S. A. 108:17714 -17719.
-
(2011)
Proc. Natl. Acad. Sci. U. S. A.
, vol.108
, pp. 17714-17719
-
-
Zhu, L.1
Wu, Q.2
Dai, J.3
Zhang, S.4
Wei, F.5
-
52
-
-
81855194370
-
Metagenomic mining for microbiologists
-
Delmont TO, Malandain C, Prestat E, Larose C, Monier JM, Simonet P, Vogel TM. 2011. Metagenomic mining for microbiologists. ISME J. 5:1837-1843.
-
(2011)
ISME J
, vol.5
, pp. 1837-1843
-
-
Delmont, T.O.1
Malandain, C.2
Prestat, E.3
Larose, C.4
Monier, J.M.5
Simonet, P.6
Vogel, T.M.7
-
53
-
-
78650203175
-
Hydrolysis of cellobiose by beta-glucosidase in the presence of soil minerals- interactions at solid-liquid interfaces and effects on enzyme activity levels
-
Lammirato C, Miltner A, Wick LY, Kastner M. 2010. Hydrolysis of cellobiose by beta-glucosidase in the presence of soil minerals- interactions at solid-liquid interfaces and effects on enzyme activity levels. Soil Biol. Biochem. 42:2203-2210.
-
(2010)
Soil Biol. Biochem.
, vol.42
, pp. 2203-2210
-
-
Lammirato, C.1
Miltner, A.2
Wick, L.Y.3
Kastner, M.4
-
54
-
-
55949134434
-
Stoichiometry of soil enzyme activity at global scale
-
Sinsabaugh RL, Lauber CL, Weintraub MN, Ahmed B, Allison SD, Crenshaw C, Contosta AR, Cusack D, Frey S, Gallo ME, Gartner TB, Hobbie SE, Holland K, Keeler BL, Powers JS, Stursova M, Takacs-Vesbach C, Waldrop MP, Wallenstein MD, Zak DR, Zeglin LH. 2008. Stoichiometry of soil enzyme activity at global scale. Ecol. Lett. 11:1252- 1264.
-
(2008)
Ecol. Lett.
, vol.11
, pp. 1252-1264
-
-
Sinsabaugh, R.L.1
Lauber, C.L.2
Weintraub, M.N.3
Ahmed, B.4
Allison, S.D.5
Crenshaw, C.6
Contosta, A.R.7
Cusack, D.8
Frey, S.9
Gallo, M.E.10
Gartner, T.B.11
Hobbie, S.E.12
Holland, K.13
Keeler, B.L.14
Powers, J.S.15
Stursova, M.16
Takacs-Vesbach, C.17
Waldrop, M.P.18
Wallenstein, M.D.19
Zak, D.R.20
Zeglin, L.H.21
more..
-
55
-
-
0012394033
-
Enzyme activities and microbiological and biochemical processes in soil
-
Burns RG, Dick RP (ed.), CRC Press, Boca Raton, FL
-
Nannipieri P, Kandeler E, Ruggiero P. 2002. Enzyme activities and microbiological and biochemical processes in soil, p 1-33. In Burns RG, Dick RP (ed.), Enzymes in the environment: activity, ecology and applications. CRC Press, Boca Raton, FL.
-
(2002)
Enzymes in the environment: activity, ecology and applications
, pp. 1-33
-
-
Nannipieri, P.1
Kandeler, E.2
Ruggiero, P.3
-
57
-
-
79955969731
-
Apo- and cellopentaose-bound structures of the bacterial cellulose synthase subunit BcsZ
-
Mazur O, Zimmer J. 2011. Apo- and cellopentaose-bound structures of the bacterial cellulose synthase subunit BcsZ. J. Biol. Chem. 286:17601- 17606.
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 17601-17606
-
-
Mazur, O.1
Zimmer, J.2
|