Ecology of coarse wood decomposition by the saprotrophic fungus Fomes fomentarius

Biodegradation

Volumn 22, Issue 4, 2011, Pages 709-718

  Větrovský, Tomáš ^a   Voříšková, Jana ^a   Šnajdr, Jaroslav ^a   Gabriel, Jiří ^a   Baldrian, Petr ^a  

^a INSTITUTE OF MICROBIOLOGY   (Czech Republic)

Author keywords

Cellulose; Lignin; Microbial ecology; Saprotrophic basidiomycetes; Wood degradation

Indexed keywords

BACTERIAL ABUNDANCE; BACTERIAL COMMUNITY; BEECH WOOD; BETULA PENDULA; BIRCH WOOD; CELLOBIOHYDROLASES; CHITINASES; CZECH REPUBLIC; DEAD WOOD; DECOMPOSERS; ENZYME PRODUCTION; EXTRACELLULAR ENZYMES; FAGUS SYLVATICA; FRUIT BODY; FRUITING BODIES; FUNGAL BIOMASS; GLUCOSIDASE; LACCASES; MICROBIAL COMMUNITIES; MICROBIAL ECOLOGY; PENDULA; POTENTIAL EFFECTS; SAPROTROPHIC BASIDIOMYCETES; SAPROTROPHIC FUNGI; SPATIAL ANALYSIS; SPATIAL HETEROGENEITY; SPATIAL VARIABILITY; SPATIALLY INHOMOGENEOUS; WHITE ROT; WOOD DECOMPOSITIONS; WOOD DEGRADATION; WOOD SAMPLES; XYLANASES;

BACTERIOLOGY; BIODEGRADATION; CATALYSTS; CELLULOSE; DEGRADATION; ECOLOGY; ENZYME ACTIVITY; FUNGI; LIGNIN; MANGANESE;

WOOD;

BACTERIAL DNA; BETA GLUCOSIDASE; CELLULOSE 1,4 BETA CELLOBIOSIDASE; CHITINASE; FUNGAL DNA; LACCASE; LIGNIN; MANGANESE PEROXIDASE; PEROXIDASE; XYLAN; XYLAN 1,4 BETA XYLOSIDASE;

ABUNDANCE; BACTERIUM; BIOMASS; CELLULOSE; DECOMPOSITION; ENZYME ACTIVITY; FUNGUS; LIGNIN; MICROBIAL COMMUNITY; MICROBIAL ECOLOGY; SAPROTROPHY; SPATIAL DISTRIBUTION; WOOD;

ARTICLE; BACTERIUM; BEECH; BIOREMEDIATION; BIRCH; CORIOLACEAE; CZECH REPUBLIC; ECOLOGY; ENZYMOLOGY; ISOLATION AND PURIFICATION; METABOLISM; MICROBIAL CONSORTIUM; MICROBIOLOGY; TREE; WOOD;

BACTERIA; BETA-GLUCOSIDASE; BETULA; BIODEGRADATION, ENVIRONMENTAL; CELLULOSE 1,4-BETA-CELLOBIOSIDASE; CHITINASE; CORIOLACEAE; CZECH REPUBLIC; DNA, BACTERIAL; DNA, FUNGAL; ECOLOGY; FAGUS; LACCASE; LIGNIN; MICROBIAL CONSORTIA; PEROXIDASES; TREES; WOOD; XYLANS; XYLOSIDASES;

CELLULOSE; DECAY; ECOLOGY; ENZYMES; FUNGI; LIGNINS; WOOD;

CZECH REPUBLIC;

BACTERIA (MICROORGANISMS); BASIDIOMYCOTA; BETULA PENDULA; CORIOLACEAE; FAGUS; FAGUS SYLVATICA; FOMES FOMENTARIUS; FUNGI;

EID: 79957894508     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-010-9390-8     Document Type: Article

References (44)

1. Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59: 143-169.
2. Arora DS, Sharma RK (2010) Ligninolytic fungal laccases and their biotechnological applications. Appl Biochem Biotechnol 160: 1760-1788.
3. Baldrian P (2008) Enzymes of saprotrophic basidiomycetes. In: Boddy L, Frankland JC, van West P (eds) Ecology of saprotrophic basidiomycetes. Academic Press, Amsterdam, pp 19-41.
4. Baldrian P, Valášková V (2008) Degradation of cellulose by basidiomycetous fungi. FEMS Microbiol Rev 32: 501-521.
5. Baldrian P, Voříšková J, Dobiášová P, Merhautová V, Lisá L, Valášková V (2010) Production of extracellular enzymes and degradation of biopolymers by saprotrophic microfungi from the upper layers of forest soil. Plant Soil. doi: 10. 1007/s11104-010-0324-3.
6. Boddy L, Watkinson SC (1995) Wood decomposition, higher fungi, and their role in nutrient redistribution. Can J Bot 73: S1377-S1383.
7. Bourbonnais R, Paice MG (1990) Oxidation of non-phenolic substrates. An expanded role for laccase in lignin biodegradation. FEBS Lett 267: 99-102.
8. Clausen CA (1996) Bacterial associations with decaying wood: a review. Int Biodeter Biodegrad 37: 101-107.
9. Crockatt ME, Pierce GI, Camden RA, Newell PM, Boddy L (2008) Homokaryons are more combative than heterokaryons of Hericium coralloides. Fungal Ecol 1: 40-48.
10. Dahlberg A, Genney DR, Heilmann-Clausen J (2010) Developing a comprehensive strategy for fungal conservation in Europe: current status and future needs. Fungal Ecol 3: 50-64.
11. de Boer W, Folman LB, Summerbell RC, Boddy L (2005) Living in a fungal world: impact of fungi on soil bacterial niche development. FEMS Microbiol Rev 29: 795-811.
12. Folman LB, Gunnewiek P, Boddy L, de Boer W (2008) Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil. FEMS Microbiol Ecol 63: 181-191.
13. Gabriel J, Baldrian P, Rychlovsky P, Krenzelok M (1997) Heavy metal content in wood-decaying fungi collected in Prague and in the National Park Sumava in the Czech Republic. Bull Environ Contam Toxicol 59: 595-602.
14. Gardes M, Bruns TD (1993) ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts. Mol Ecol 2: 113-118.
15. Hatakka A (2001) Biodegradation of lignin. In: Steinbüchel A, Hofrichter M (eds) Biopolymers 1: lignin, humic substances and coal. Wiley-VCH, Weinheim, pp 129-180.
16. Heilmann-Clausen J, Boddy L (2005) Inhibition and stimulation effects in communities of wood decay fungi: exudates from colonized wood influence growth by other species. Microb Ecol 49: 399-406.
17. Heuer H, Krsek M, Baker P, Smalla K, Wellington EMH (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl Environ Microbiol 63: 3233-3241.
18. Hiscox J, Baldrian P, Rogers HJ, Boddy L (2010) Changes in oxidative enzyme activity during interspecific mycelial interactions involving the white-rot fungus Trametes versicolor. Fungal Gene Biol. doi: 10. 1016/j. fgb. 2010. 03. 007.
19. Leigh MB, Pellizari VH, Uhlik O, Sutka R, Rodrigues J, Ostrom NE, Zhou JH, Tiedje JM (2007) Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs). ISME J 1: 134-148.
20. Lekounougou S, Mounguengui S, Dumarçay S, Rose C, Courty PE, Garbaye J, Gérardin P, Jacquot JP, Gelhaye E (2008) Initial stages of Fagus sylvatica wood colonization by the white-rot basidiomycete Trametes versicolor: enzymatic characterization. Int Biodeterior Biodegrad 61: 287-293.
21. Lindahl BD, Finlay RD (2006) Activities of chitinolytic enzymes during primary and secondary colonization of wood by basidiomycetous fungi. New Phytol 169: 389-397.
22. Lonsdale D, Pautasso M, Holdenrieder O (2008) Wood-decaying fungi in the forest: conservation needs and management options. Eur J For Res 127: 1-22.
23. Lundell TK, Mäkelä MR, Hildén K (2010) Lignin-modifying enzymes in filamentous basidiomycetes-ecological, functional and phylogenetic review. J Basic Microbiol 50: 5-20.
24. Ngo TT, Lenhoff HM (1980) A sensitive and versatile chromogenic assay for peroxidase and peroxidase-coupled reactions. Anal Biochem 105: 389-397.
25. Niemela T, Renvall P, Pentilla R (1995) Interactions of fungi at late stages of wood decomposition. Ann Bot Fennici 32: 141-152.
26. Niemenmaa O, Galkin S, Hatakka A (2008) Ergosterol contents of some wood-rotting basidiomycete fungi grown in liquid and solid culture conditions. Int Biodeterior Biodegrad 62: 125-134.
27. Przybyl K (2001) Fungi and bacteria associated with the wet and brown wood in trunk of Betula pendula trees. Acta Soc Bot Polon 70: 113-117.
28. Rast DM, Baumgartner D, Mayer C, Hollenstein GO (2003) Cell wall-associated enzymes in fungi. Phytochemistry 64: 339-366.
29. Roussel B, Rapior S, Masson CL, Boutie P (2002) Fomes fomentarius (L.: Fr.) Fr.: a mushroom with varied uses. Cryptogamie Mycologie 23: 349-366.
30. Ruel K, Ambert K, Joseleau J-P (1994) Influence of the enzyme equipment of white-rot fungi on the patterns of wood degradation. FEMS Microbiol Rev 13: 241-254.
31. Sagova-Mareckova M, Cermak L, Novotna J, Plhackova K, Forstova J, Kopecky J (2008) Innovative methods for soil DNA purification tested in soils with widely differing characteristics. Appl Environ Microbiol 74: 2902-2907.
32. Šnajdr J, Valášková V, Merhautová V, Herinková J, Cajthaml T, Baldrian P (2008) Spatial variability of enzyme activities and microbial biomass in the upper layers of Quercus petraea forest soil. Soil Biol Biochem 40: 2068-2075.
33. Teichert S, Bondrup-Nielsen S (2005) Effect of spatial scale on habitat use of Bolitotherus cornutus (Coleoptera: Tenebrionidae). Can Entomol 137: 192-201.
34. Urcelay C, Robledo G (2009) Positive relationship between wood size and basidiocarp, production of polypore fungi in Alnus acuminata forest. Fungal Ecol 2: 135-139.
35. Vainio EJ, Hantula J (2000) Direct analysis of wood-inhabiting fungi using denaturing gradient gel electrophoresis of amplified ribosomal DNA. Mycol Res 104: 927-936.
36. Valášková V, Baldrian P (2006) Degradation of cellulose and hemicelluloses by the brown rot fungus Piptoporus betulinus-production of extracellular enzymes and characterization of the major cellulases. Microbiol SGM 152: 3613-3622.
37. Valášková V, Baldrian P (2009) Denaturing gradient gel electrophoresis as a fingerprinting method for the analysis of soil microbial communities. Plant Soil Environ 55: 413-423.
38. Valášková V, Šnajdr J, Bittner B, Cajthaml T, Merhautová V, Hoffichter M, Baldrian P (2007) Production of lignocellulose-degrading enzymes and degradation of leaf litter by saprotrophic basidiomycetes isolated from a Quercus petraea forest. Soil Biol Biochem 39: 2651-2660.
39. Valášková V, de Boer W, Gunnewiek P, Pospíšek M, Baldrian P (2009) Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood. ISME J 3: 1218-1221.
40. Wakelin SA, Colloff MJ, Harvey PR, Marschner P, Gregg AL, Rogers SL (2007) The effects of stubble retention and nitrogen application on soil microbial community structure and functional gene abundance under irrigated maize. FEMS Microbiol Ecol 59: 661-670.
41. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innins MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols. Academic Press, San Diego, CA, pp 315-322.
42. Wilmotte A, van der Auwera G, De Wachter R (1993) Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium chlorogloeopsis HTF ('mastigocladus laminosus HTF') strain PCC7518, and phylogenetic analysis. FEBS Lett 317: 96-100.
43. Zhang HB, Yang MX, Tu R (2008a) Unexpectedly high bacterial diversity in decaying wood of a conifer as revealed by a molecular method. Int Biodeterior Biodegrad 62: 471-474.
44. Zhang HB, Yang MX, Tu R, Gao L, Zhao ZW (2008b) Fungal communities in decaying sapwood and heartwood of a conifer Keteleeria evelyniana. Curr Microbiol 56: 358-362.