메뉴 건너뛰기




Volumn 11, Issue 6, 2014, Pages 1131-1145

GECC: Gene expression based ensemble classification of colon samples

Author keywords

chi square; Colon cancer; ensemble classification; F Score; gene expressions; mRMR; PCA

Indexed keywords

DISEASES; FEATURE EXTRACTION; PRINCIPAL COMPONENT ANALYSIS; RADIAL BASIS FUNCTION NETWORKS; STATISTICAL TESTS; SUPPORT VECTOR MACHINES;

EID: 84919470360     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2014.2344655     Document Type: Article
Times cited : (43)

References (51)
  • 1
    • 84919489826 scopus 로고    scopus 로고
    • (2012). Colon cancer risk factors. [Online]. Available: http://ccalliance.org/colorectal-cancer/riskfactors.html
    • (2012) Colon Cancer Risk Factors
  • 4
    • 70449353529 scopus 로고    scopus 로고
    • Texture based classification of hyperspectral colon biopsy samples using clbp
    • K. Masood and N. Rajpoot, "Texture based classification of hyperspectral colon biopsy samples using clbp," in Proc. Int. Symp. Biomed. Imaging: From Nano Macro., 2009, pp. 1011-1014.
    • (2009) Proc. Int. Symp. Biomed. Imaging: From Nano Macro. , pp. 1011-1014
    • Masood, K.1    Rajpoot, N.2
  • 6
    • 0344405766 scopus 로고    scopus 로고
    • Diagnostic potential of near-infrared raman spectroscopy in the colon: Differentiating adenomatous from hyperplastic polyps
    • A. Molckovsky, L. M. Song, M. G. Shim, N. E. Marcon, and B. C. Wilson, "Diagnostic potential of near-infrared raman spectroscopy in the colon: Differentiating adenomatous from hyperplastic polyps," Gastrointest. Endosc., vol. 57, pp. 396-402, 2003.
    • (2003) Gastrointest. Endosc. , vol.57 , pp. 396-402
    • Molckovsky, A.1    Song, L.M.2    Shim, M.G.3    Marcon, N.E.4    Wilson, B.C.5
  • 7
    • 3843130884 scopus 로고    scopus 로고
    • Laser-induced auto fluorescence microscopy of normal and tumor human colonic tissue
    • Z. Huang, "Laser-induced auto fluorescence microscopy of normal and tumor human colonic tissue," Int. J. Oncol., vol. 24, pp. 59-63, 2004.
    • (2004) Int. J. Oncol. , vol.24 , pp. 59-63
    • Huang, Z.1
  • 9
    • 84894297956 scopus 로고    scopus 로고
    • Ensemble classification of colon biopsy images based on information rich hybrid features
    • S. Rathore, M. Hussain, M. A. Iftikhar, and A. Jalil, "Ensemble classification of colon biopsy images based on information rich hybrid features," Comput. Biol. Med., vol. 47, pp. 76-92, 2014.
    • (2014) Comput. Biol. Med. , vol.47 , pp. 76-92
    • Rathore, S.1    Hussain, M.2    Iftikhar, M.A.3    Jalil, A.4
  • 11
    • 0034838539 scopus 로고    scopus 로고
    • Orientational coherence metrics: Classification of colon images based on human form perception
    • A. G. Todman, R. N. G. Naguib, and M. K. Bennett, "Orientational coherence metrics: Classification of colon images based on human form perception," in Proc. IEEE Can. Conf. Elec. Comput. Eng., 2001, pp. 1379-1385.
    • (2001) Proc. IEEE Can. Conf. Elec. Comput. Eng. , pp. 1379-1385
    • Todman, A.G.1    Naguib, R.N.G.2    Bennett, M.K.3
  • 12
    • 84879173899 scopus 로고    scopus 로고
    • Biomarker identification and cancer classification based on microarray data using Laplace Naive Bayes model with mean shrinkage
    • Nov./Dec.
    • M. Y. Wu, D. Q. Dai, Y. Shi, H. Yan, and X. F. Zhang, "Biomarker identification and cancer classification based on microarray data using Laplace Naive Bayes model with mean shrinkage," IEEE/ACM Trans. Comput. Biol. Bioinformat., vol. 9, no. 6, pp. 1649-1662, Nov./Dec. 2012.
    • (2012) IEEE ACM Trans. Comput. Biol. Bioinformat. , vol.9 , Issue.6 , pp. 1649-1662
    • Wu, M.Y.1    Dai, D.Q.2    Shi, Y.3    Yan, H.4    Zhang, X.F.5
  • 13
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays
    • Nov./Dec.
    • U. Alon, N. Barkai, D. A. Notterman, K. Gish, S. Ybarra, D. Mack, and A. J. Levine, "Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays," Proc. National Acad. Sci. USA, vol. 96, pp. 6745-6750, Nov./Dec. 1999.
    • (1999) Proc. National Acad. Sci. USA , vol.96 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    MacK, D.6    Levine, A.J.7
  • 14
    • 33846455463 scopus 로고    scopus 로고
    • Gene expression profiling reveals a massive, aneuploidy-dependent transcriptional deregulation and distinct differences between lymph node-negative and lymph node-positive colon carcinomas
    • M. Grade, P. Hormann, S. Becker, A. B. Hummon, D. Wangsa, S. Varma, R. Simon, T. Liersch, H. Becker, M. J. Difilippantonio, B. M. Ghadimi, and T. Ried, "Gene expression profiling reveals a massive, aneuploidy-dependent transcriptional deregulation and distinct differences between lymph node-negative and lymph node-positive colon carcinomas," Cancer Res., vol. 67, pp. 41-56, 2007.
    • (2007) Cancer Res. , vol.67 , pp. 41-56
    • Grade, M.1    Hormann, P.2    Becker, S.3    Hummon, A.B.4    Wangsa, D.5    Varma, S.6    Simon, R.7    Liersch, T.8    Becker, H.9    Difilippantonio, M.J.10    Ghadimi, B.M.11    Ried, T.12
  • 17
    • 0036139278 scopus 로고    scopus 로고
    • Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method
    • L. Li, C. R. Weinberg, T. A. Darden, and L. G. Pedersen, "Gene selection for sample classification based on gene expression data: Study of sensitivity to choice of parameters of the GA/KNN method," Bioinformatics, vol. 17, no. 12, pp. 1131-1142, 2001.
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1131-1142
    • Li, L.1    Weinberg, C.R.2    Darden, T.A.3    Pedersen, L.G.4
  • 18
    • 84887939552 scopus 로고    scopus 로고
    • A multiple kernel support vector machine scheme for simultaneous feature selection and rule-based classification
    • Z. Chen and J. Li, "A multiple kernel support vector machine scheme for simultaneous feature selection and rule-based classification," in Proc. 11th Pacific-Asia Conf. Adv. Knowl. Discovery Data Mining, 2007, pp. 441-448.
    • (2007) Proc. 11th Pacific-Asia Conf. Adv. Knowl. Discovery Data Mining , pp. 441-448
    • Chen, Z.1    Li, J.2
  • 20
    • 79958146057 scopus 로고    scopus 로고
    • An improved neural approach for malignant and normal colon tissue classification from oligonucleotide arrays
    • E. T. Venkatesh, P. Thangaraj, and S. Chitra, "An improved neural approach for malignant and normal colon tissue classification from oligonucleotide arrays," Euro. J. Sci. Res., vol. 54, pp. 159-164, 2011.
    • (2011) Euro. J. Sci. Res. , vol.54 , pp. 159-164
    • Venkatesh, E.T.1    Thangaraj, P.2    Chitra, S.3
  • 21
    • 78049529811 scopus 로고    scopus 로고
    • Colon cancer prediction with genetics profiles using evolutionary techniques
    • A. Kulkarni, N. Kumar, V. Ravi, and U. S. Murthy, "Colon cancer prediction with genetics profiles using evolutionary techniques," Expert Syst. Appl., vol. 38, pp. 2752-2757, 2011.
    • (2011) Expert Syst. Appl. , vol.38 , pp. 2752-2757
    • Kulkarni, A.1    Kumar, N.2    Ravi, V.3    Murthy, U.S.4
  • 22
    • 84874021595 scopus 로고    scopus 로고
    • Classification of bioinformatics dataset using finite impulse response extreme learning machine for cancer diagnosis
    • K. Lee, Z. Man, D. Wang, and Z. Cao, "Classification of bioinformatics dataset using finite impulse response extreme learning machine for cancer diagnosis," Neural Comput. Appl., vol. 22, pp. 457-468, 2013.
    • (2013) Neural Comput. Appl. , vol.22 , pp. 457-468
    • Lee, K.1    Man, Z.2    Wang, D.3    Cao, Z.4
  • 23
    • 84877695360 scopus 로고    scopus 로고
    • An ensemble of SVM classifiers based on gene pairs
    • M. Tong, K. H. Liu, C. Xu, and W. Ju, "An ensemble of SVM classifiers based on gene pairs," Comput. Biol. Med., vol. 43, pp. 729-737, 2013.
    • (2013) Comput. Biol. Med. , vol.43 , pp. 729-737
    • Tong, M.1    Liu, K.H.2    Xu, C.3    Ju, W.4
  • 24
    • 0033636139 scopus 로고    scopus 로고
    • Support vector machine classification and validation of cancer tissue samples using microarray expression data
    • T. S. Furey, N. Cristianini, N. Duffy, D. W. Bednarski, M. Schummer, and D. Haussler, "Support vector machine classification and validation of cancer tissue samples using microarray expression data," Bioniformatics, vol. 16, no. 10, pp. 906-914, 2000.
    • (2000) Bioniformatics , vol.16 , Issue.10 , pp. 906-914
    • Furey, T.S.1    Cristianini, N.2    Duffy, N.3    Bednarski, D.W.4    Schummer, M.5    Haussler, D.6
  • 25
    • 84919483859 scopus 로고    scopus 로고
    • (2013). Colon cancer data set Kent ridge. [Online]. Available: http://datam.i2r.a-star.edu.sg/datasets/krbd/ColonTumor/ColonTumor.html
    • (2013) Colon Cancer Data Set Kent Ridge
  • 26
    • 84919474115 scopus 로고    scopus 로고
    • (2013). Colon cancer data set Biogps. [Online]. Available: http://biogps.org/dataset/1352/stage-ii-and-stage-iii-colorectalcancer/
    • (2013) Colon Cancer Data Set Biogps
  • 27
    • 0035300437 scopus 로고    scopus 로고
    • Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays
    • D. A. Notterman, U. Alon, A. J. Sierk, and A. J. Levine, "Transcriptional gene expression profiles of colorectal adenoma, adenocarcinoma, and normal tissue examined by oligonucleotide arrays," Cancer Res., vol. 61, no. 7, pp. 3124-3130, 2001.
    • (2001) Cancer Res. , vol.61 , Issue.7 , pp. 3124-3130
    • Notterman, D.A.1    Alon, U.2    Sierk, A.J.3    Levine, A.J.4
  • 29
    • 84875276463 scopus 로고    scopus 로고
    • A fast ranking algorithm for predicting gene functions in biomolecular networks
    • Nov./Dec.
    • M. Re, M. Mesiti, and G. Valentini, "A fast ranking algorithm for predicting gene functions in biomolecular networks," IEEE/ACM Trans. Comput. Biol. Bioinformat., vol. 9, no. 6, pp. 1812-1818, Nov./Dec. 2012.
    • (2012) IEEE ACM Trans. Comput. Biol. Bioinformat. , vol.9 , Issue.6 , pp. 1812-1818
    • Re, M.1    Mesiti, M.2    Valentini, G.3
  • 30
  • 31
    • 24344458137 scopus 로고    scopus 로고
    • Feature selection based on mutual information: Criteria of max-dependency, max-relevance, and min-redundancy
    • Aug.
    • H. Peng, F. Long, and C. Ding, "Feature selection based on mutual information: Criteria of max-dependency, max-relevance, and min-redundancy," IEEE Trans. Pattern Anal. Mach. Intell., vol. 27, no. 8, pp. 1226-1238, Aug. 2005.
    • (2005) IEEE Trans. Pattern Anal. Mach. Intell. , vol.27 , Issue.8 , pp. 1226-1238
    • Peng, H.1    Long, F.2    Ding, C.3
  • 32
    • 67349259624 scopus 로고    scopus 로고
    • A new feature selection method on classification of medical data sets: Kernel f-score feature selection
    • K. Polat and S. Gunes, "A new feature selection method on classification of medical data sets: Kernel f-score feature selection," Expert Syst. Appl., vol. 36, no. 7, pp. 10367-10373, 2009.
    • (2009) Expert Syst. Appl. , vol.36 , Issue.7 , pp. 10367-10373
    • Polat, K.1    Gunes, S.2
  • 33
    • 0000325341 scopus 로고
    • On lines and planes of closest fit to systems of points in space
    • K. Pearson, "On lines and planes of closest fit to systems of points in space," Philosoph. Mag., vol. 2, no. 11, pp. 559-572, 1901.
    • (1901) Philosoph. Mag. , vol.2 , Issue.11 , pp. 559-572
    • Pearson, K.1
  • 34
    • 84868589804 scopus 로고    scopus 로고
    • Carotid artery image segmentation using modified spatial fuzzy c-means and ensemble clustering
    • M. Hassan, A. Chaudhry, A. Khan, and J. Y. Kim, "Carotid artery image segmentation using modified spatial fuzzy c-means and ensemble clustering," Comput. Methods Programs Biomed., vol. 108, pp. 1261-1276, 2012.
    • (2012) Comput. Methods Programs Biomed. , vol.108 , pp. 1261-1276
    • Hassan, M.1    Chaudhry, A.2    Khan, A.3    Kim, J.Y.4
  • 36
    • 79960635985 scopus 로고    scopus 로고
    • Detection of masses in mammogram images using CNN, geostatistic functions and SVM
    • W. B. Sampaioa, E. M. Diniza, A. C. Silvaa, A. C. Paivaa, and M. Gattassb, "Detection of masses in mammogram images using CNN, geostatistic functions and SVM," Comput. Biol. Med., vol. 41, no. 8, pp. 653-664, 2011.
    • (2011) Comput. Biol. Med. , vol.41 , Issue.8 , pp. 653-664
    • Sampaioa, W.B.1    Diniza, E.M.2    Silvaa, A.C.3    Paivaa, A.C.4    Gattassb, M.5
  • 37
    • 84875921509 scopus 로고    scopus 로고
    • Classification of EMG signals using PSO optimized SVM for diagnosis of neuromuscular disorders
    • A. Subasi, "Classification of EMG signals using PSO optimized SVM for diagnosis of neuromuscular disorders," Comput. Biol. Med., vol. 43, no. 5, pp. 576-586, 2013.
    • (2013) Comput. Biol. Med. , vol.43 , Issue.5 , pp. 576-586
    • Subasi, A.1
  • 40
    • 79951772030 scopus 로고    scopus 로고
    • Neural system for heartbeats recognition using genetically integrated ensemble of classifiers
    • S. Osowski, K. Siwek, and R. Siroic, "Neural system for heartbeats recognition using genetically integrated ensemble of classifiers," Comput. Biol. Med., vol. 41, no. 3, pp. 173-180, 2011.
    • (2011) Comput. Biol. Med. , vol.41 , Issue.3 , pp. 173-180
    • Osowski, S.1    Siwek, K.2    Siroic, R.3
  • 41
    • 35148838877 scopus 로고
    • The weighted majority algorithm
    • N. Littlestone and M. K. Warmuth, "The weighted majority algorithm," Info. Comput., vol. 108, pp. 212-261, 1994.
    • (1994) Info. Comput. , vol.108 , pp. 212-261
    • Littlestone, N.1    Warmuth, M.K.2
  • 47
    • 0036735386 scopus 로고    scopus 로고
    • Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma
    • G. J. Gordon, R. V. Jensen, L. L. Hsiao, S. R. Gullans, J. E. Blumenstock, S. Ramaswamy, W. G. Richards, D. J. Sugarbaker, and R. Bueno, "Translation of microarray data into clinically relevant cancer diagnostic tests using gene expression ratios in lung cancer and mesothelioma," Cancer Res., vol. 62, pp. 4963-4967, 2002.
    • (2002) Cancer Res. , vol.62 , pp. 4963-4967
    • Gordon, G.J.1    Jensen, R.V.2    Hsiao, L.L.3    Gullans, S.R.4    Blumenstock, J.E.5    Ramaswamy, S.6    Richards, W.G.7    Sugarbaker, D.J.8    Bueno, R.9
  • 51
    • 0035881732 scopus 로고    scopus 로고
    • Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer
    • J. Welsh, L. Sapinoso, A. Su, S. Kern, J. Wang-Rodriguez, C. Moskaluk, H. Frierson, and G. Hampton, "Analysis of gene expression identifies candidate markers and pharmacological targets in prostate cancer," Cancer Res., vol. 61, no. 16, pp. 5974-5978, 2001.
    • (2001) Cancer Res. , vol.61 , Issue.16 , pp. 5974-5978
    • Welsh, J.1    Sapinoso, L.2    Su, A.3    Kern, S.4    Wang-Rodriguez, J.5    Moskaluk, C.6    Frierson, H.7    Hampton, G.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.