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Volumn 10, Issue 5, 2013, Pages

Gene Expression Classification of Colon Cancer into Molecular Subtypes: Characterization, Validation, and Prognostic Value

(24)  Marisa, Laetitia a   de Reyniès, Aurélien a   Duval, Alex b,c   Selves, Janick d   Gaub, Marie Pierre e,f   Vescovo, Laure a   Etienne Grimaldi, Marie Christine g   Schiappa, Renaud a   Guenot, Dominique e   Ayadi, Mira a   Kirzin, Sylvain d   Chazal, Maurice h   Fléjou, Jean François b,c,i   Benchimol, Daniel j   Berger, Anne k   Lagarde, Arnaud l   Pencreach, Erwan e,f,m   Piard, Françoise n   Elias, Dominique o   Parc, Yann c,i   more..


Author keywords

[No Author keywords available]

Indexed keywords

B RAF KINASE; MESSENGER RNA; PROTEIN P53; TRANSCRIPTOME;

EID: 84878302099     PISSN: 15491277     EISSN: 15491676     Source Type: Journal    
DOI: 10.1371/journal.pmed.1001453     Document Type: Article
Times cited : (1109)

References (39)
  • 2
    • 0038360113 scopus 로고    scopus 로고
    • American Joint Committee on Cancer, 5th edition. Philadelphia: Lippincott-Raven
    • American Joint Committee on Cancer (1997) AJCC cancer staging manual, 5th edition. Philadelphia: Lippincott-Raven.
    • (1997) AJCC cancer staging manual
  • 3
    • 14544300998 scopus 로고    scopus 로고
    • Systematic review of microsatellite instability and colorectal cancer prognosis
    • Popat S, Hubner R, Houlston RS, (2005) Systematic review of microsatellite instability and colorectal cancer prognosis. J Clin Oncol 23: 609-618.
    • (2005) J Clin Oncol , vol.23 , pp. 609-618
    • Popat, S.1    Hubner, R.2    Houlston, R.S.3
  • 4
    • 79953856354 scopus 로고    scopus 로고
    • Value of mismatch repair, KRAS, and BRAF mutations in predicting recurrence and benefits from chemotherapy in colorectal cancer
    • Hutchins G, Southward K, Handley K, Magill L, Beaumont C, et al. (2011) Value of mismatch repair, KRAS, and BRAF mutations in predicting recurrence and benefits from chemotherapy in colorectal cancer. J Clin Oncol 29: 1261-1270.
    • (2011) J Clin Oncol , vol.29 , pp. 1261-1270
    • Hutchins, G.1    Southward, K.2    Handley, K.3    Magill, L.4    Beaumont, C.5
  • 5
    • 2442684455 scopus 로고    scopus 로고
    • Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer
    • Wang Y, Jatkoe T, Zhang Y, Mutch MG, Talantov D, et al. (2004) Gene expression profiles and molecular markers to predict recurrence of Dukes' B colon cancer. J Clin Oncol 22: 1564-1571.
    • (2004) J Clin Oncol , vol.22 , pp. 1564-1571
    • Wang, Y.1    Jatkoe, T.2    Zhang, Y.3    Mutch, M.G.4    Talantov, D.5
  • 6
    • 20644443287 scopus 로고    scopus 로고
    • Molecular staging for survival prediction of colorectal cancer patients
    • Eschrich S, Yang I, Bloom G, Kwong KY, Boulware D, et al. (2005) Molecular staging for survival prediction of colorectal cancer patients. J Clin Oncol 23: 3526-3535.
    • (2005) J Clin Oncol , vol.23 , pp. 3526-3535
    • Eschrich, S.1    Yang, I.2    Bloom, G.3    Kwong, K.Y.4    Boulware, D.5
  • 7
    • 79951506562 scopus 로고    scopus 로고
    • Gene expression signature to improve prognosis prediction of stage II and III colorectal cancer
    • Salazar R, Roepman P, Capella G, Moreno V, Simon I, et al. (2011) Gene expression signature to improve prognosis prediction of stage II and III colorectal cancer. J Clin Oncol 29: 17-24.
    • (2011) J Clin Oncol , vol.29 , pp. 17-24
    • Salazar, R.1    Roepman, P.2    Capella, G.3    Moreno, V.4    Simon, I.5
  • 8
    • 77957582401 scopus 로고    scopus 로고
    • Relationship between tumor gene expression and recurrence in four independent studies of patients with stage II/III colon cancer treated with surgery alone or surgery plus adjuvant fluorouracil plus leucovorin
    • O'Connell MJ, Lavery I, Yothers G, Paik S, Clark-Langone KM, et al. (2010) Relationship between tumor gene expression and recurrence in four independent studies of patients with stage II/III colon cancer treated with surgery alone or surgery plus adjuvant fluorouracil plus leucovorin. J Clin Oncol 28: 3937-3944.
    • (2010) J Clin Oncol , vol.28 , pp. 3937-3944
    • O'Connell, M.J.1    Lavery, I.2    Yothers, G.3    Paik, S.4    Clark-Langone, K.M.5
  • 9
    • 33845608798 scopus 로고    scopus 로고
    • Classification of colorectal cancer based on correlation of clinical, morphological and molecular features
    • Jass JR, (2007) Classification of colorectal cancer based on correlation of clinical, morphological and molecular features. Histopathology 50: 113-130.
    • (2007) Histopathology , vol.50 , pp. 113-130
    • Jass, J.R.1
  • 10
    • 36749025213 scopus 로고    scopus 로고
    • Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer
    • Shen L, Toyota M, Kondo Y, Lin E, Zhang L, et al. (2007) Integrated genetic and epigenetic analysis identifies three different subclasses of colon cancer. Proc Natl Acad Sci U S A 104: 18654-18659.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 18654-18659
    • Shen, L.1    Toyota, M.2    Kondo, Y.3    Lin, E.4    Zhang, L.5
  • 11
    • 79958806016 scopus 로고    scopus 로고
    • Four molecular subtypes of colorectal cancer and their precursor lesions
    • Kang GH, (2011) Four molecular subtypes of colorectal cancer and their precursor lesions. Arch Pathol Lab Med 135: 698-703.
    • (2011) Arch Pathol Lab Med , vol.135 , pp. 698-703
    • Kang, G.H.1
  • 12
    • 84856549042 scopus 로고    scopus 로고
    • Genome-scale analysis of aberrant DNA methylation in colorectal cancer
    • Hinoue T, Weisenberger DJ, Lange CP, Shen H, Byun HM, et al. (2012) Genome-scale analysis of aberrant DNA methylation in colorectal cancer. Genome Res 22: 271-282.
    • (2012) Genome Res , vol.22 , pp. 271-282
    • Hinoue, T.1    Weisenberger, D.J.2    Lange, C.P.3    Shen, H.4    Byun, H.M.5
  • 13
    • 84863922124 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of human colon and rectal cancer
    • Cancer Genome Atlas Network
    • Cancer Genome Atlas Network (2012) Comprehensive molecular characterization of human colon and rectal cancer. Nature 487: 330-337.
    • (2012) Nature , vol.487 , pp. 330-337
  • 14
    • 38649099966 scopus 로고    scopus 로고
    • KRAS mutations as an independent prognostic factor in patients with advanced colorectal cancer treated with cetuximab
    • Lièvre A, Bachet JB, Boige V, Cayre A, Le Corre D, et al. (2008) KRAS mutations as an independent prognostic factor in patients with advanced colorectal cancer treated with cetuximab. J Clin Oncol 26: 374-379.
    • (2008) J Clin Oncol , vol.26 , pp. 374-379
    • Lièvre, A.1    Bachet, J.B.2    Boige, V.3    Cayre, A.4    Le Corre, D.5
  • 15
    • 0034086197 scopus 로고    scopus 로고
    • p53 alterations predict tumor response to neoadjuvant chemotherapy in head and neck squamous cell carcinoma: a prospective series
    • Cabelguenne A, Blons H, de Waziers I, Carnot F, Houllier AM, et al. (2000) p53 alterations predict tumor response to neoadjuvant chemotherapy in head and neck squamous cell carcinoma: a prospective series. J Clin Oncol 18: 1465-1473.
    • (2000) J Clin Oncol , vol.18 , pp. 1465-1473
    • Cabelguenne, A.1    Blons, H.2    de Waziers, I.3    Carnot, F.4    Houllier, A.M.5
  • 16
    • 0032534069 scopus 로고    scopus 로고
    • A National Cancer Institute Workshop on Microsatellite Instability for cancer detection and familial predisposition: development of international criteria for the determination of microsatellite instability in colorectal cancer
    • Boland CR, Thibodeau SN, Hamilton SR, Sidransky D, Eshleman JR, et al. (1998) A National Cancer Institute Workshop on Microsatellite Instability for cancer detection and familial predisposition: development of international criteria for the determination of microsatellite instability in colorectal cancer. Cancer Res 58: 5248-5257.
    • (1998) Cancer Res , vol.58 , pp. 5248-5257
    • Boland, C.R.1    Thibodeau, S.N.2    Hamilton, S.R.3    Sidransky, D.4    Eshleman, J.R.5
  • 17
    • 33745541234 scopus 로고    scopus 로고
    • CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer
    • Weisenberger DJ, Siegmund KD, Campan M, Young J, Long TI, et al. (2006) CpG island methylator phenotype underlies sporadic microsatellite instability and is tightly associated with BRAF mutation in colorectal cancer. Nat Genet 38: 787-793.
    • (2006) Nat Genet , vol.38 , pp. 787-793
    • Weisenberger, D.J.1    Siegmund, K.D.2    Campan, M.3    Young, J.4    Long, T.I.5
  • 18
    • 61449137784 scopus 로고    scopus 로고
    • Gene expression profiling reveals a new classification of adrenocortical tumors and identifies molecular predictors of malignancy and survival
    • de Reyniès A, Assié G, Rickman DS, Tissier F, Groussin L, et al. (2009) Gene expression profiling reveals a new classification of adrenocortical tumors and identifies molecular predictors of malignancy and survival. J Clin Oncol 27: 1108-1115.
    • (2009) J Clin Oncol , vol.27 , pp. 1108-1115
    • de Reyniès, A.1    Assié, G.2    Rickman, D.S.3    Tissier, F.4    Groussin, L.5
  • 20
    • 33845432928 scopus 로고    scopus 로고
    • Adjusting batch effects in microarray expression data using empirical Bayes methods
    • Johnson WE, Li C, Rabinovic A, (2007) Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics 8: 118-127.
    • (2007) Biostatistics , vol.8 , pp. 118-127
    • Johnson, W.E.1    Li, C.2    Rabinovic, A.3
  • 22
    • 0038724494 scopus 로고    scopus 로고
    • Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data
    • Monti S, Tamayo P, Mesirov J, Golub T, (2003) Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data. Mach Learn 52: 91-118.
    • (2003) Mach Learn , vol.52 , pp. 91-118
    • Monti, S.1    Tamayo, P.2    Mesirov, J.3    Golub, T.4
  • 23
    • 0037478605 scopus 로고    scopus 로고
    • Repeated observation of breast tumor subtypes in independent gene expression data sets
    • Sorlie T, Tibshirani R, Parker J, Hastie T, Marron JS, et al. (2003) Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc Natl Acad Sci U S A 100: 8418-8423.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 8418-8423
    • Sorlie, T.1    Tibshirani, R.2    Parker, J.3    Hastie, T.4    Marron, J.S.5
  • 24
    • 79955681163 scopus 로고    scopus 로고
    • The intestinal stem cell signature identifies colorectal cancer stem cells and predicts disease relapse
    • Merlos-Suárez A, Barriga FM, Jung P, Iglesias M, Céspedes MV, et al. (2011) The intestinal stem cell signature identifies colorectal cancer stem cells and predicts disease relapse. Cell Stem Cell 8: 511-524.
    • (2011) Cell Stem Cell , vol.8 , pp. 511-524
    • Merlos-Suárez, A.1    Barriga, F.M.2    Jung, P.3    Iglesias, M.4    Céspedes, M.V.5
  • 25
    • 34848868159 scopus 로고    scopus 로고
    • Gene expression patterns of human colon tops and basal crypts and BMP antagonists as intestinal stem cell niche factors
    • Kosinski C, Li VS, Chan AS, Zhang J, Ho C, et al. (2007) Gene expression patterns of human colon tops and basal crypts and BMP antagonists as intestinal stem cell niche factors. Proc Natl Acad Sci U S A 104: 15418-15423.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 15418-15423
    • Kosinski, C.1    Li, V.S.2    Chan, A.S.3    Zhang, J.4    Ho, C.5
  • 26
    • 84862244596 scopus 로고    scopus 로고
    • Identification of a poor-prognosis BRAF-mutant-like population of patients with colon cancer
    • Popovici V, Budinska E, Tejpar S, Weinrich S, Estrella H, et al. (2012) Identification of a poor-prognosis BRAF-mutant-like population of patients with colon cancer. J Clin Oncol 30: 1288-1295.
    • (2012) J Clin Oncol , vol.30 , pp. 1288-1295
    • Popovici, V.1    Budinska, E.2    Tejpar, S.3    Weinrich, S.4    Estrella, H.5
  • 27
    • 33846241618 scopus 로고    scopus 로고
    • Serrated carcinomas form a subclass of colorectal cancer with distinct molecular basis
    • Laiho P, Kokko A, Vanharanta S, Salovaara R, Sammalkorpi H, et al. (2007) Serrated carcinomas form a subclass of colorectal cancer with distinct molecular basis. Oncogene 26: 312-320.
    • (2007) Oncogene , vol.26 , pp. 312-320
    • Laiho, P.1    Kokko, A.2    Vanharanta, S.3    Salovaara, R.4    Sammalkorpi, H.5
  • 28
    • 78649985198 scopus 로고    scopus 로고
    • Update on the serrated pathway to colorectal carcinoma
    • Snover DC, (2011) Update on the serrated pathway to colorectal carcinoma. Hum Pathol 42: 1-10.
    • (2011) Hum Pathol , vol.42 , pp. 1-10
    • Snover, D.C.1
  • 29
    • 84876822143 scopus 로고    scopus 로고
    • Importance of serrated polyps in colorectal carcinogenesis
    • 10.1111/j.1445-2197.2012.06269.x, E-pub ahead of print. doi
    • Liang JJ, Bissett I, Kalady M, Bennet A, Church JM, (2012) Importance of serrated polyps in colorectal carcinogenesis. ANZ J Surg E-pub ahead of print. doi:10.1111/j.1445-2197.2012.06269.x.
    • (2012) ANZ J Surg
    • Liang, J.J.1    Bissett, I.2    Kalady, M.3    Bennet, A.4    Church, J.M.5
  • 30
    • 57449109336 scopus 로고    scopus 로고
    • The Wnt modulator sFRP2 enhances mesenchymal stem cell engraftment, granulation tissue formation and myocardial repair
    • Alfaro MP, Pagni M, Vincent A, Atkinson J, Hill MF, et al. (2008) The Wnt modulator sFRP2 enhances mesenchymal stem cell engraftment, granulation tissue formation and myocardial repair. Proc Natl Acad Sci U S A 105: 18366-18371.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 18366-18371
    • Alfaro, M.P.1    Pagni, M.2    Vincent, A.3    Atkinson, J.4    Hill, M.F.5
  • 31
    • 84865012891 scopus 로고    scopus 로고
    • Prognostic gene expression signature associated with two molecularly distinct subtypes of colorectal cancer
    • Oh SC, Park YY, Park ES, Lim JY, Kim SM, et al. (2011) Prognostic gene expression signature associated with two molecularly distinct subtypes of colorectal cancer. Gut 61: 1291-1298.
    • (2011) Gut , vol.61 , pp. 1291-1298
    • Oh, S.C.1    Park, Y.Y.2    Park, E.S.3    Lim, J.Y.4    Kim, S.M.5
  • 32
    • 33846889777 scopus 로고    scopus 로고
    • Multiple gene expression classifiers from different array platforms predict poor prognosis of colorectal cancer
    • Lin YH, Friederichs J, Black MA, Mages J, Rosenberg R, et al. (2007) Multiple gene expression classifiers from different array platforms predict poor prognosis of colorectal cancer. Clin Cancer Res 13: 498-507.
    • (2007) Clin Cancer Res , vol.13 , pp. 498-507
    • Lin, Y.H.1    Friederichs, J.2    Black, M.A.3    Mages, J.4    Rosenberg, R.5
  • 33
    • 84878323070 scopus 로고    scopus 로고
    • Validation of a genomic classifier (ColoPrint) for predicting outcome in the T3-MSS subgroup of stage II colon cancer patients [abstract 3510]
    • 1-5 Jun 2012; Chicago, Illinois, US
    • Salazar R, Tabernero J, Moreno V, Nitsche U, Bachleitner-Hofmann T, et al. (2012) Validation of a genomic classifier (ColoPrint) for predicting outcome in the T3-MSS subgroup of stage II colon cancer patients [abstract 3510]. American Society of Clinical Oncology Annual Meeting; 1-5 Jun 2012; Chicago, Illinois, US.
    • (2012) American Society of Clinical Oncology Annual Meeting
    • Salazar, R.1    Tabernero, J.2    Moreno, V.3    Nitsche, U.4    Bachleitner-Hofmann, T.5
  • 35
    • 83355166957 scopus 로고    scopus 로고
    • Validation study of a quantitative multigene reverse transcriptase-polymerase chain reaction assay for assessment of recurrence risk in patients with stage II colon cancer
    • Gray RG, Quirke P, Handley K, Lopatin M, Magill L, et al. (2011) Validation study of a quantitative multigene reverse transcriptase-polymerase chain reaction assay for assessment of recurrence risk in patients with stage II colon cancer. J Clin Oncol 29: 4611-4619.
    • (2011) J Clin Oncol , vol.29 , pp. 4611-4619
    • Gray, R.G.1    Quirke, P.2    Handley, K.3    Lopatin, M.4    Magill, L.5
  • 36
    • 81055132044 scopus 로고    scopus 로고
    • Validation of a 12-gene colon cancer recurrence score (RS) in patients (pts) with stage II colon cancer (CC) from CALGB 9581 [abstract]. 2011 ASCO Annual Meeting Proceedings (Post-Meeting Edition)
    • (May 20
    • Venook AP, Niedzwiecki D, Lopatin M, Lee M, Friedman PN, et al. (2011) Validation of a 12-gene colon cancer recurrence score (RS) in patients (pts) with stage II colon cancer (CC) from CALGB 9581 [abstract]. 2011 ASCO Annual Meeting Proceedings (Post-Meeting Edition). J Clin Oncol 29 (May 20 Suppl):: 3518.
    • (2011) J Clin Oncol , vol.29 , Issue.SUPPL. , pp. 3518
    • Venook, A.P.1    Niedzwiecki, D.2    Lopatin, M.3    Lee, M.4    Friedman, P.N.5
  • 37
    • 84871449030 scopus 로고    scopus 로고
    • Validation of the 12-gene colon cancer recurrence score (RS) in NSABP C07 as a predictor of recurrence in stage II and III colon cancer patients treated with 5FU/LV (FU) and 5FU/LV+oxaliplatin (FU+Ox) [abstract]. 2012 ASCO Annual Meeting Proceedings (Post-Meeting Edition)
    • May 20
    • O'Connell M, Lee M, Lopatin M, Yothers G, Clark-Langone K, et al. (2012) Validation of the 12-gene colon cancer recurrence score (RS) in NSABP C07 as a predictor of recurrence in stage II and III colon cancer patients treated with 5FU/LV (FU) and 5FU/LV+oxaliplatin (FU+Ox) [abstract]. 2012 ASCO Annual Meeting Proceedings (Post-Meeting Edition). J Clin Oncol 30 (May 20 Suppl):: 3512.
    • (2012) J Clin Oncol , vol.30 , Issue.SUPPL. , pp. 3512
    • O'Connell, M.1    Lee, M.2    Lopatin, M.3    Yothers, G.4    Clark-Langone, K.5
  • 38
    • 84878342641 scopus 로고    scopus 로고
    • Validation of two gene-expression risk scores in a large colon cancer cohort and contribution to an improved prognostic method [abstract 3509]
    • 1-5 Jun 2012; Chicago, Illinois, US
    • Roth A, Di Narzo AF, Tejpar S, Bosman F, Popovici V, et al. (2012) Validation of two gene-expression risk scores in a large colon cancer cohort and contribution to an improved prognostic method [abstract 3509]. American Society of Clinical Oncology Annual Meeting; 1-5 Jun 2012; Chicago, Illinois, US.
    • (2012) American Society of Clinical Oncology Annual Meeting
    • Roth, A.1    Di Narzo, A.F.2    Tejpar, S.3    Bosman, F.4    Popovici, V.5
  • 39
    • 84555197163 scopus 로고    scopus 로고
    • Predicting survival after curative colectomy for cancer: individualizing colon cancer staging
    • Weiser MR, Gönen M, Chou JF, Kattan MW, Schrag D, (2011) Predicting survival after curative colectomy for cancer: individualizing colon cancer staging. J Clin Oncol 29: 4796-4802.
    • (2011) J Clin Oncol , vol.29 , pp. 4796-4802
    • Weiser, M.R.1    Gönen, M.2    Chou, J.F.3    Kattan, M.W.4    Schrag, D.5


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