In silico dissection of cell-type-associated patterns of gene expression in prostate cancer

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 2, 2004, Pages 615-620

  Stuart, Robert O ^a,b,e   Wachsman, William ^a,b,e   Berry, Charles C ^c,e   Wang Rodriguez, Jessica ^a,d,e   Wasserman, Linda ^b,e   Klacansky, Igor ^e   Masys, Dan ^e   Arden, Karen ^b,c,e   Goodison, Steven ^d,e   McClelland, Michael ^e,f   Wang, Yipeng ^f   Sawyers, Anne ^f   Kalcheva, Iveta ^e   Tarin, David ^d,e   Mercola, Dan ^e,f  

^a VA SAN DIEGO HEALTHCARE SYSTEM   (United States)

^b UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^f SIDNEY KIMMEL CANCER CENTER   (United States)

Author keywords

Biomarkers; Expression profiles; Linear regression; Microarray; Paracine

Indexed keywords

BIOLOGICAL MARKER;

ARTICLE; CANCER CELL; CELL TYPE; CLINICAL ARTICLE; COMPUTER MODEL; CONTROLLED STUDY; DNA MICROARRAY; EPITHELIUM CELL; GENE EXPRESSION; GENE EXPRESSION PROFILING; HUMAN; HUMAN CELL; IMMUNOHISTOCHEMISTRY; MALE; PATHOGENESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROSTATE CANCER; SCORING SYSTEM; STROMA; VALIDATION PROCESS;

GENE EXPRESSION PROFILING; HUMANS; IMMUNOHISTOCHEMISTRY; MALE; NUCLEIC ACID HYBRIDIZATION; PROSTATIC NEOPLASMS;

EID: 9144264883     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.2536479100     Document Type: Article

References (21)

1. Howe, H. L., Wingo, P. A., Thun, M. J., Ries, L. A. G., Rosenberg, H. M., Feigal, E. G. & Edwards, B. K. (2001) J. Natl. Cancer Inst. 93, 824-842.
2. DeVita, V. T., Jr., & Bleickardt, E. W. (2001) Cancer J. 7, Supp. 1, S2-S13.
3. Dhanasekaran, S. M., Barrette, T. R., Ghosh, D., Shah, R., Varambally, S., Kurachi, K., Pienta, K. J., Rubin, M. A. & Chinnaiyan, A. M. (2001) Nature 412, 822-826.
4. Ho, S. M. & Lau, K. M. (2002) Curr. Urol. Rep. 3, 53-60.
5. Rhodes, D. R., Barrette, T. R., Rubin, M. A., Ghosh, D. & Chinnaiyan, A. M. (2002) Cancer Res. 62, 4427-4433.
6. Li, C. & Wong, W. H. (2001) Proc. Natl. Acad. Sci. USA 98, 31-36.
7. Iheka, R. & Gentleman, R. (1996) J. Comput. Graph. Stat. 5, 299-314.
8. Zeger, S. L. & Liang, K. Y. (1986) Biometrics 42, 121-130.
9. Efron, B., Tibshirani, R., Storey, J. D. & Tusher, V. (2001) J. Am. Stat. Assoc. 96, 1151-1160.
10. Tibshirani, R., Hastie, T., Narasimhan, B. & Chu, G. (2002) Proc. Natl. Acad. Sci. USA 99, 6567-6572.
11. Tusher, V. G., Tibshirani, R. & Chu, G. (2001) Proc. Natl. Acad. Sci. USA 98, 5116-5121.
12. Di Como, C. J., Urist, M. J., Babayan, I., Drobnjak, M., Hedvat, C. V., Teruya-Feldstein, J., Pohar, K., Hoos, A. & Cordon-Cardo, C. (2002) Clin. Cancer Res. 8, 494-501.
13. Kramer, G., Steiner, G., Fodinger, D., Fiebiger, E., Rappersberger, C., Binder, S., Hofbauer, J. & Marberger, M. (1995) J. Urol. 154, 1636-1641.
14. Nie, D., Che, M., Grignon, D., Tang, K. & Honn, K. V. (2001) Cancer Metastasis Rev. 20, 195-206.
15. Chiao, J. W., Hsieh, T. C., Xu, W., Sklarew, R. J. & Kancherla, R. (1999) Int. J. Oncol. 15, 1033-1037.
16. Welsh, J. B., Sapinoso, L. M., Su, A. I., Kern, S. G., Wang-Rodriguez, J., Moskaluk, C. A., Frierson, H. F., Jr., & Hampton, G. M. (2001) Cancer Res. 61, 5974-5978.
17. Singh, D., Febbo, P. G., Ross, K., Jackson, D. G., Manola, J., Ladd, C., Tamayo, P., Renshaw, A. A., D'Amico, A. V., Richie, J. P., et al. (2002) Cancer Cell 1, 203-209.
18. Sherwood, E. R., Berg, L. A., Mitchell, N. J., McNeal, J. E., Kozlowski, J. M. & Lee, C. (1990) J. Urol. 143, 167-171.
19. Blanchere, M., Mestayer, C., Saunier, E., Broshuis, M. & Mowszowicz, I. (2001) Prostate 46, 311-318.
20. Tuxhorn, J. A., Ayala, G. E., Smith, M. J., Smith, V. C., Dang, T. D. & Rowley, D. R. (2002) Clin. Cancer Res. 8, 2912-2923.
21. Liu, P., Nakorchevskiy, A. & Marcotte, E. M. (2003) Proc. Natl. Acad. Sci. USA 100, 10370-10375.